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Keywords: Background: The most frequent monogenic causes of growth hormone insensitivity (GHI) include defects in
Growth hormone insensitivity genes encoding the GH receptor itself (GHR), the signal transducer and activator of transcription (STAT5B), the
Whole-exome analysis insulin like-growth factor type I (IGF1) and the acid-labile subunit (IGFALS). GHI is characterized by a con-
STAT5B tinuum of mild to severe post-natal growth failure.
IGFALS
Objective: To characterize the molecular defect in a patient with short stature and partial GHI.
Patient and methods: The boy was born at term adequate for gestational age from non-consanguineous normal-
stature parents. At 2.2 years, he presented proportionate short stature (height −2.77 SDS), wide forehead and
normal mental development. Whole-exome analysis and functional characterization (site-directed mutagenesis,
dual luciferase reporter assay, immunofluorescence and western immunoblot) were performed.
Results: Biochemical and endocrinological evaluation revealed partial GH insensitivity with normal stimulated
GH peak (7.8 ng/mL), undetectable IGF1 and low IGFBP3 levels. Two heterozygous variants in the GH-signaling
pathway were found: a novel heterozygous STAT5B variant (c.1896G > T, p.K632N) and a hypomorphic IGFALS
variant (c.1642C > T, p.R548W). Functional in vitro characterization demonstrated that p.K632N-STAT5b is an
inactivating variant that impairs STAT5b activity through abolished phosphorylation. Remarkably, the patient's
immunological evaluation displayed only a mild hypogammaglobulinemia, while a major characteristic of
STAT5b deficient patients is severe immunodeficiency.
Conclusions: We reported a novel pathogenic inactivating STAT5b variant, which may be associated with partial
GH insensitivity and can present without severe immunological complications in heterozygous state. Our results
contribute to expand the spectrum of phenotypes associated to GHI.
1. Introduction IGFALS, STAT5B and STAT3) but also in other growth-related genes,
such as IKBKB, PAPPA2 and PRKCA [4,5]. Mutations in heterozygous
Growth hormone insensitivity (GHI) is characterized by a con- state in some of these genes have been associated to a milder clinical
tinuum of mild to severe post-natal growth failure, normal to elevated phenotype, contributing to broadening the GHI spectrum. For instance,
GH levels, and low serum concentrations of insulin like growth factor I heterozygosity for IGFALS variants causes a 1 SD loss in height com-
(IGF1) and IGF binding protein 3 (IGFBP3) [1]. Complete GHI was in- pared to wild type first degree relatives [6,7] and most heterozygous
itially associated to defects in the GH receptor gene (GHR) [2,3]. carriers of mutations in the IGF1 and STAT5B genes were shown to be
However, due to technical advances in DNA sequencing and high-re- significantly shorter than non-carriers [8,9]. Interestingly, hetero-
solution genotyping, the number of monogenic causes of GHI has in- zygous carriers of STAT5b variants present diverse clinical features,
creased and include defects not only along the GHR-IGF1 axis (IGF1, including in some cases absence of overt immunodeficiency, a major
⁎
Corresponding author at: Centro de Investigaciones Endocrinológicas ‘Dr César Bergadá’ (CEDIE), CONICET, FEI, División de Endocrinología, Hospital de Niños
Ricardo Gutiérrez, Gallo 1360, Buenos Aires CP1425EFD, Argentina.
E-mail address: marianagutierrez@cedie.org.ar (M. Gutiérrez).
https://doi.org/10.1016/j.ghir.2019.12.005
Received 5 November 2019; Received in revised form 13 December 2019; Accepted 26 December 2019
Available online 27 December 2019
1096-6374/ © 2019 Elsevier Ltd. All rights reserved.
L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
characteristic of STAT5b deficient patients [10,11]. In addition, com- height of 84.5 cm (−2.98 SDS), rhGH treatment was started at a daily
binations of heterozygous gene variants in STAT5B and IGFALS, asso- dose of 45 μg/kg·d. After 2 years of treatment, increments in height
ciated or not with copy number variations, have been previously re- (+1.0 SDS) and in IGF1 levels (+3.2 SDS) were observed (Table 1 and
ported in children with apparent GHI, suggesting that this condition Supplementary Fig. 1).
could result from digenic, oligogenic or polygenic defects [10]. In the
present study, we report two heterozygous variants in the GH/IGF1 2.2. Methods
signaling pathway, a novel missense variant in STAT5b, c.1896G > T
(p.K632N) and a previously described missense variant in IGFALS, 2.2.1. Endocrinological and immunological tests
c.1642C > T (p.R548W), in a patient with short stature and a mild Serum levels of GH, IGF1, IGFBP3 and anti-thyroperoxidase anti-
immunological phenotype. Clinical presentation and functional studies bodies were determined by chemiluminescent immunometric assays
of the novel heterozygous p.K632N mutation in the SH2 domain of (Immulite 2000, Siemens Healthcare Diagnostics, Llamberis, Gwynedd,
STAT5b are presented. UK). TSH, FT4, ACTH, cortisol, prolactin, and insulin were measured by
electrochemiluminescence (Cobas e411 analyzer; Roche Diagnostics
GmbH, Mannheim, Germany). Serum ALS levels were evaluated by
2. Patient and methods
enzyme-linked immunosorbent assay (ELISA, Mediagnost, Reutlingen,
Germany). Total serum immunoglobulin (IgG, IgM and IgA) were
2.1. Patient: Case report
measured by kinetic nephelometry using commercially available kits
(Array 360, Beckman Coulter Inc). IgE was measured by ELFA
The proband is an Argentine boy born at 40 weeks of gestational age
(VIDAS®).
from non-consanguineous healthy parents. His birth weight was 3750 g
(+0.78 SDS) and his birth length 49.5 cm (−0.18 SDS). His mother's
and father's heights were 155 cm (−0.93 SDS) and 165.2 cm (−1.11 2.2.2. Molecular studies
SDS), respectively. His younger sister and brother had normal height Whole-exome sequencing of genomic DNA, obtained from the per-
(Fig. 1). ipheral blood of the patient [13], was performed using Illumina's
He was referred to our pediatric-endocrinology unit at 2.2 years of Nextera Exome V1.2 kit (Illumina, San Diego, USA) for library pre-
age for short stature. His height was 80.0 cm (−2.77 SDS), weight, 9.10 paration and exome capture and the Illumina HiSeq1500 sequencer at
Kg (−2.52 SDS), and head circumference, 48.5 cm (0.01 SDS), ac- the Instituto de Agrobiotecnología de Rosario (INDEAR)-CONICET
cording to Argentine reference growth charts [12]. Physical examina- (Rosario, Argentina). Alignments and variant annotations were made as
tion showed proportionate short stature (Sitting height: 48.8 cm, 3rd- previously described [14]. Variants were prioritized according to po-
10th percentile), wide forehead and high-pitched voice. Developmental pulation frequency (GnomAD, 1000Genome project), variant con-
milestones were normal. The patient had normal fasting routine la- sequence and a 376-candidate gene list associated to short stature (see
boratory studies and normal prolactin and thyroid and adrenal func- Supplementary Table 1). The identified IGFALS and STAT5B variants
tion: serum hemoglobin (11.6 g/dL), glucose (71 mg/dL), creatinine were confirmed by Sanger sequencing, as well as segregation of these
(0.28 mg/dL), AST (55 U/L), ALT (22 U/L), albumin (5 g/dL), calcium variants in other family members (primers used are available upon
(10 mg/dL), phosphate (5.7 mg/dL), insulin (0.8 μU/mL), TSH (5.3 μU/ request).
L), free T4 (1.36 ng/dL), prolactin (12.2 ng/mL), cortisol (15,7 μg/dL),
anti-thyroperoxidase antibodies (< 20 UI/mL), ACTH 43 (pg/mL). He 2.2.3. In silico bioinformatics analysis
presented low levels of IGF1 (< 25 ng/mL, −2.59 SDS) and IGFBP3 The pathogenicity of the STAT5b variant identified during genetic
(1.34 μg/mL, −2.01 SDS), and a normal arginine clonidine GH pro- analysis was evaluated in silico with PolyPhen-2 [15], SIFT [16], Mu-
vocative test (maximum peak of growth hormone: 7.8 ng/mL). At the tation Taster [17], SNAP2 [18] and CADD [19], using the following
age of 2.3 years, two IGF1 generation tests (IGF-GT) were performed: NCBI reference sequences: NG_007271.1 (gene), NM_012448.3 (mRNA)
one with low (11 μg/kg·day) and another with high (38 μg/kg·day) dose and NP_036580.2 (protein) and it was classified according to the
of recombinant human growth hormone (rhGH) (Omnitrope, Sandoz). American College of Medical Genetics and Genomics (ACMG) [20].
No response was observed in the low-dose IGF-GT, while for the high- Multiple sequence alignments among STAT5b from different species
dose IGF-GT, at least 1 SDS gain was observed for IGF1, IGFBP3 and and among STAT proteins were performed with PRALINE program
ALS after 7 days of GH treatment (Table 1). At 2.9 years of age with a (http://www.ibi.vu.nl/programs /pralinewww/) using reference
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L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
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L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
Table 2
Variant pathogenicity prediction by different softwares.
PolyPhen2 (score) SIFT (score) Mutation taster (probability) SNAP2 (score) CADD (score) GnomAD (Freq) HGMD
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L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
Fig. 2. Schematics of human STAT5b protein domains and multiple sequence alignments performed with PRALINE software. A) The position of the mutation K632N
is boxed above the SH2 domain. The secondary structure of the SH2 domain, based on the crystal structure of human STAT1 [22], is indicated above the scheme. The
amino acid Lys632 is located at the end of ßC and it is conserved among STAT5 proteins. B) The Lys632 (boxed in red) is highly conserved among different species.
The colour scheme indicates the least conserved alignment position (dark blue), to the most conserved alignment position (red). (For interpretation of the references
to colour in this figure legend, the reader is referred to the web version of this article.)
transcriptional activity (P < .001). By contrast, GH induced reporter heterozygous gene variants in the GH/IGF1 signaling pathway:
activity for cells co-transfected with both WT- and p.K632N-STAT5b p.K632N-STAT5b and p.R548W-ALS variants. Our first though was that
proteins was similar to that detected for cells transfected with only WT- both variants may act synergistically to cause short stature in this pa-
STAT5b (Fig. 4B). To further characterize the response to GH of co- tient. However, we found by targeted molecular genetic analysis both
transfected cells compared to WT-STAT5b alone, we performed a GH- heterozygous variants in the patient's unaffected mother and the het-
dose response analysis. We observed that reporter activity levels in- erozygous STAT5B mutation in his unaffected sister, as well. Similar to
duced by GH, were not significantly different for WT-STAT5b trans- the patient, they both showed normal IgE levels and a mild hypo-
fected cells and for cells co-transfected with WT- and p.K632N-STAT5b gammaglobulinemia (Supplementary Table 2) without clinical mani-
(Fig. 4C). Next, we reconstituted the in vitro system with a fixed con- festations of immune dysregulation. In the patient's exome data ana-
centration of the WT-STAT5b encoding plasmid and different con- lysis, we could not find any additional clear variant/gene candidate
centrations of mutant STAT5b expression vector (ratios 1:2 and 1:4, WT that pass out the analytic criteria used. Unfortunately, WES analysis
to mutant). As shown in Fig. 4D, increasing amounts of p.K632N- was not performed for the patient's relatives and no growth data during
STAT5b dose-dependently reduced the level of reporter activity in re- childhood were available for the mother. Although we cannot con-
sponse to GH, in comparison to cells co-transfected with equal quan- clusively rule out the possibility of an additional genetic variant con-
tities of WT and mutant STAT5b (ratio 1:1), whereas no major change tributing to the short stature in this patient, incomplete penetrance
in activity upon addition of the empty vector was detected (Data not could also be considered as a possible explanation for this discrepancy.
shown). Furthermore, as in many hereditary diseases, the onset of clinical
In addition, we analyzed the expression of p.K632N by Western manifestation could be sex related. GH and STAT5b have been im-
Blot. p.K632N was shown to be expressed at comparable levels to those plicated in the regulation of a number of liver genes that are expressed
of WT-STAT5b in reconstitution studies (Fig. 5A). However, GH-in- in a sexually dimorphic pattern [27–30]. In Stat5b knock out mouse
duced phosphorylation of p.K632N variant was not detected. Moreover, model, the levels of IGF1 were reduced only in male Stat5b mutant
cells co-expressing both WT and p.K632N proteins showed reduced mice, but not in females, and mutant males were 20%–30% smaller
levels of STAT5b phosphorylation (Fig. 5A). p.K632N expression and than their Stat5b wild-type littermates [31]. Authors attribute these
cellular localization were also investigated after transfection using sex-related differences in the phenotypes to differences in the produc-
immunofluorescence. As expected, after GH stimulation we observed tion of IGF1: while in males the primary IGF1 source is the liver, in
that WT protein localization was mainly nuclear, but p.K632N-STAT5b females, both the liver and the ovaries contribute. Although a sexual
remained in the cytoplasm (Fig. 5B). dimorphism pattern for STAT5b has not been demonstrated in humans,
this could be due to the low number of reported cases of STAT5b mu-
4. Discussion tations carriers. Interestingly, two female relatives of a severe short
statured male patient carrying the heterozygous dominant-negative
We describe a patient with short stature, decreased serum IGF1 and p.A478V-STAT5b variant, presented height within normal limits (−1.5
ALS levels, and partial GH insensitivity carrying a combination of two SDS) [11], supporting the concept of incomplete penetrance for STAT5B
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Fig. 3. Homology based structural model of unphosphorylated STAT5b. A) Monomer in cartoon representation. Domains are colored as in Fig. 2. Lys632 is indicated
and represented in stick mode in magenta. B) Expanded SH2 domain showing the exposed positive charged portion of Lys632 (stick). Red surface represents the
hydrophobic core favoring SH2 domains interactions for dimerization. C) On C-terminus of beta strand C, Lys632 (in magenta) is proposed to form an intramolecular
salt bridge with Asp634 and Asp612. Residues forming the hydrophobic system are represented in stick mode in this image. D) As in C, but the structure has been
rotated to show the predicted side-chain position of Asn (circled in black) in the variant p.K632N using the PyMOL backbone-dependent rotamer library. Substitution
of Lys632 by Asn is predicted to result in the loss of salt-bridge interactions Asp612/Aps634-Lys632 (yellow dotted lines). (For interpretation of the references to
colour in this figure legend, the reader is referred to the web version of this article.)
gene variants. Moreover, mutations in non-coding regions of the IG- contributions, regardless of whether they are buried or solvent exposed,
FALS and STAT5B genes and epigenetic factors, could be involved in or contained in hydrogen bonds or not [34,35]. Disruption of these
regulation of their expression. interactions may induce local protein remodeling and partial unfolding
The heterozygous STAT5b p.K632N mutation, is novel. Biallelic [36]. Therefore, the change of Lys632 for Asn could promote a re-
STAT5B mutations cause a rare disorder reported in only a handful of stricted folding of the β-sheet C and neighbor fragments in STAT5b,
patients. It is characterized by IGF1 deficiency, severe growth failure, leading to altered phosphorylation and interaction with other proteins.
and immune dysregulation which associates primary immunodeficiency Previously reported homozygous inactivating missense mutations
and autoimmunity. The patient shares some physical features, such as (p.A630P, p.F646S) were also located close to this residue suggesting an
short stature, a prominent forehead, normal body proportions and high- overall disturbing effect on the mutant proteins structure [37,38].
pitched voice, with total STAT5b deficient patients. Of note, he pre- Moreover, experimental point replacements in this region (p.N639M,
sented only a mild hypogammaglobulinemia without immunological p.L640F) promoted a significant destabilization of the helices αB-αC
complications. Similar to this patient, Klammt et al. reported three close and stimulated the unfolding of the β-sheet C in STAT5b [39].
cases of heterozygous STAT5B-mutation carriers (p.Q474R, p.A478V, In vitro expression of p.K632N was comparable to WT-STAT5b.
p.Q177P) who lacked the severe immune deficiency and pathological Despite the local β-sheet C misfolding, this structural disruption would
autoimmunity typically associated with total STAT5b deficiency [11]. not long-distance spread from the residue change and the protein ap-
Authors hypothesized that cytokine signaling is less sensitive to de- pears to be normally synthesized and immunologically detected by
creased STAT5b activity than GH signaling. In agreement with this, Western Blot. Therefore, this change would not grossly affect protein
mice with half the normal dose of Stat5b seem almost unaffected by levels of STAT5b. Our data demonstrate that mutation K632N di-
immunodeficiencies [32,33]. minishes STAT5b activity through impaired Tyr699 phosphorylation.
In silico analysis for p.K632N-STAT5b variant suggested patho- When the p.K632N-STAT5b variant was expressed in homozygous form,
genicity. Consistent with this, the homology model predicted Lys632 we were not able to detect GH-induced phosphorylation, nuclear
can be involved in intramolecular salt bridges with Asp612 and Asp634, translocation or luciferase activation. Furthermore, under unstimulated
which can be important for local protein structure stability. In addition, conditions, transcriptional activity for HEK293-T cells expressing
salt bridges could have stabilizing electrostatic free energy p.K632N-STAT5b variant was reduced compared to that detected for
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L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
WT-STAT5b. Co-transfection of p.K632N and WT-STAT5b also resulted transfection of increasing amounts of p.K632N expression plasmid in
in remarkably decreased basal transcriptional activity compared to WT- association with a fixed amount of WT plasmid, diminished GH-sti-
STAT5b alone. However, in response to GH, WT-STAT5b in hetero- mulated luciferase activity compared to the activation obtained with
zygous state with p.K632N is able to overcome this limitation and the the equimolar ratio WT-mutant 1:1. Although further studies are re-
activity is induced ~20 fold. In addition, GH-dose response experiments quired to completely elucidate the functional mechanisms underlying
showed that a 10-fold lower dose of GH (20 ng/mL) stimulated STAT5b- these effects, it is possible to speculate that while one allele of WT-
dependent gene transcription in co-transfected cells at levels compar- STAT5b is not enough to achieve adequate growth, it would be suffi-
able to those of cells expressing only WT-STAT5b. Nonetheless, the co- cient to respond to pharmacological doses of GH. Supporting this
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L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
Fig. 5. Analysis of p.K632N-STAT5b expression, phosphorylation and cellular localization. A) WT- and p.K632N-STAT5b were transfected into HEK293-T cells
expressing GHR and p-STAT5 and total STAT5b were determined by Western Immunoblot under basal (−) or GH-stimulated conditions (+, 30 min, 200 ng/mL). B)
Cellular localization of p.K632N-STAT5b mutant under GH-treatment (+). HEK293-T cells were transfected with WT- or p.K632N-STAT5b expressing plasmids and
then stimulated with GH (200 ng/mL, 30 min) followed by anti-STAT5b antibody immunostaining and Hoechst nuclear staining (scale bar, 10 μm). The fluorescent
signals were recorded by epi-fluorescent microscope. Representative images are presented.
observation, in vitro studies results are in line with the patient's re- patient carrying this variant showed a lower 150-KDa ternary (IGF1/
sponse to GH-treatment. Although GH therapy received USA Food and IGFBP3/ALS) complex peak that was substantially increased in pre-
Drug Administration (FDA) approval for idiopathic short stature pa- sence of a high concentration of purified hIGFBP3, suggesting that this
tients, the degree of expected efficacy in such a heterogeneous group of variant possibly shows decreased IGFBP3 affinity [25]. In addition,
children remains undetermined. The consensus statement of the Lawson former studies from our group demonstrated a significant reduction of
Wilkins Pediatric Endocrine Society and the European Society for the secreted amount of p.R548W-ALS protein in vitro [26]. Nonetheless,
Paediatric Endocrinology suggested criteria for poor first year response as we already mentioned, heterozygosity for IGFALS variants is known
as a height velocity SDS < 1 or change in height SDS < 0.3–0.5 [40]. to cause a milder short stature phenotype, although adult height usually
This patient had an increment in height of 1.0 SDS in two years of falls within the normal range [6,7]. Thus, it is not clear whether this
treatment and in addition, both IGF1 and IGFBP3 increased towards hypomorphic IGFALS variant could contribute to the clinical and bio-
normal range for age. However, long term responsiveness has still to be chemical phenotype.
determined. The diversity of the phenotype associated with GH insensitivity
The second variant found in the patient, p.R548W-ALS, has been underlines the importance of not only reporting novel variants, but also
reported in children with idiopathic short stature and is described as to in vitro characterize them, to better delineate the pathophysiology
SNP in several databases [10,26]. However, studies with the serum of a and define the therapeutic strategy, as well. In this regard, we would
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L. Ramírez, et al. Growth Hormone & IGF Research 50 (2020) 61–70
like to emphasize the potential predictive value of functional char- [7] H.M. Domene, P.A. Scaglia, A.S. Martinez, A.C. Keselman, L.M. Karabatas,
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Disclosure statement
H. Yayah Jones, V. Hwa, S. Revale, M. Vázquez, H. Jasper, A. Kumar, H. Domené,
Partial growth hormone insensitivity and dysregulatory immune disease associated
The authors declare no conflict of interest. with de novo germline activating STAT3 mutations, Mol. Cell. Endocrinol. (2018),
https://doi.org/10.1016/j.mce.2018.01.016.
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