Professional Documents
Culture Documents
BOROSILICATE GLASS
● Pyrex and kimax
● Most commonly used
● Used for heating and sterilization purposes OSTWALD FOLIN
● Characterized by a high degree of thermal ● Transfer pipette
resistance and has low alkali content ● For viscous fluid
● With etched ring
BORON-FREE GLASSWARE
● Soft glass
● High resistance to alkali
● Its thermal resistance is less as compared to
borosilicate glass PASTEUR PIPETTE
● Transfer pipette
● Commonly made from
COREX (CORNING) plastic
● Special alumina-silicate glass ● Transfer fluid without
consideration of a specific
volume
VYCOR (CORNING)
● Utilized for high thermal, drastic heat shock
and extreme chemical treatment with acids
and dilute alkali
GRADUATED PIPETTE
FLINT GLASS
● Made up of soda-lime glass and a mixture of
calcium, silicon and sodium oxides SEROLOGICAL PIPETTE
● Poor resistance to high temperature ● Graduated pipette
● With graduations to the
tip
● Blowout pipette
TYPES OF GLASSWARE
POLYOLEFINS FLUOROCARBON
● Polyethylene ● Teflon MOHR PIPETTE
● polypropylene ● PDVF ● Graduated pipette
● Without graduations to
ENGINEERING RESINS LABWARE PLASTICS the tip
● Nylon ● Corian ● Self draining pipette
● Acetal ● Epoxy resins
● Polycarbonate ● ABS
● Polystyrene ● Polyetherimide
● Polyphenylene oxides
MICROPIPETTES
● Sahli-Hellige pipet
PIPETTE CLASSIFICATION ● Lang-Levy pipet
A. CALIBRATION MARKS/DESIGN ● RBC and WBC pipet
● Kirk and Overflow pipet
● TO DELIVER (TD) - delivers the exact
amount it holds into a container
● TO CONTAIN (TC) - holds the
particular volume but does not
dispense the exact volume
B. DRAINAGE CHARACTERISTICS
● BLOWOUT - with continuous etched
ring on the top of the pipette; exact
volume is obtained when the last
drop is blow out
● SELF-DRAINING - without etched
ring on top of the pipette; liquid is AUTOMATIC PIPETS
allow to drain by gravity
C. TYPES
TRANSFER PIPETTE GRADUATED OR
MEASURING PIPETTE
3. DISPENSER/DILUTOR
● It obtains liquid from a common
reservoir and dispense it repeatedly
● It combines sampling and
dispensing functions
● Beaker
● Erlenmeyer flasks
● Volumetric flasks
● Graduated cylinder
DESICCANTS/DESICCATOR
● Many compounds combine with water molecules to form loose
chemical crystals.
➢ The compound and the associated water are called a
hydrate. When the water of crystallization is removed from
the compound, it is said to be anhydrous.
➢ Substances that take up water on exposure to atmospheric
conditions are called hygroscopic. These materials make
excellent drying substances and are sometimes used as
desiccants (drying agents) to keep other chemicals from
becoming hydrated.
➢ If these compounds absorb enough water from the
atmosphere to cause dissolution, they are known as
deliquescent substances
LECTURE 3: ANALYTICAL METHODS AND INSTRUMENTATION 2 TYPES OF DOUBLE-BEAM SPECTROPHOTOMETER
LIGHT WAVES THEORY Double-beam in space Double-beam in time
● Isaac Newton – light was made up of tiny particles. Uses 2 photodetectors, for the Uses one photodetector and
● Christian Huygens – proposed a wave theory of light. sample beam and reference alternately passes the
● Planck’s formula: E= hv beam. monochromatic light through the
sample cuvet and then
➢ E- is the energy of a photon in Joules
reference cuvet using a chopper
➢ h- constant (6.626 x 10-34 erg sec) or rotating the sector mirror.
➢ v- frequency
WAVELENGTH FREQUENCY
Is the distance between two Is the number of vibrations of
successive peaks. wave motion per second.
FILTERS
SINGLE AND DOUBLE BEAM SPECTROPHOTOMETER
- Are simple, least expensive, not precise but useful.
Single beam Double beam - Are made by placing semi-transparent silver films on both sides of
spectrophotometer spectrophotometer a dielectric such as magnesium fluoride.
Is the simplest type of Is an instrument that splits the - Produced monochromatic light based on the principle of
absorption spectrometer. monochromatic light into two constructive interference of waves
components - one beam passes - Usually pass a wide band of radiant energy and have low
It is designed to make one through the sample, and the transmittance of the selected 23 wavelength
measurement at a time at one other through a reference
specified wavelength solution or blank
EXIT SLIT ● A blanking process may not be effective in some cases of
It controls the width of light beam (bandpass)- allows only a narrow turbidity, and ultracentrifugation may be necessary to clear the
fraction of the spectrum to reach the sample cuvet. serum or plasma.
PRINCIPLE
METER ● It determines the amount of scattered light by a particulate
It displays output of the detection system. matter suspended in a
● Instrument deviation is commonly a result of the finite band pass turbid solution.
of the filter or monochromator. ● Light scattering depends on
● Turbidity readings on a spectrophotometer are greater in the wavelength and particle
blue region than in the red region of the spectrum. size.
● An absorbance check is performed using glass filters or ● Light scattered by particles
solutions that have known absorbance values for a specific is measured at an angle,
wavelength 36 typically 15-90 degrees to the beam incident on the cuvet.
● The linearity of a spectrophotometer can be determined using
optical filters or solutions that have known absorbance values for COMPONENTS OF NEPHELOMETER
a given wavelength. Light source, collimator, monochromator, sample cuvet, stray light
trap, and photodetector
BLANKING TECHNIQUE
● Means the blank contains serum but without the reagent to
complete the assay
● Reagent blank corrects absorbance caused by the color of the
reagents – the absorbance of reagents is automatically
subtracted from each of unknown reading.
ELECTROPHORESIS POLYACRYLAMIDE GEL STARCH GEL
Is the migration of charged solutes or particles in an electrical field. - Polyacrylamide gel - Starch gel electrophoresis
electrophoresis involves separates proteins on the
TERMINOLOGIES
separation of protein on the basis of surface charge and
basis of charge and molecular molecular size, as does
size. polyacrylamide gel.
AMPHOTERIC ELECTROENDOSMOSIS/
- Polyacrylamide gel - The procedure is not widely
Has a net charge that can be ENDOSMOSIS
electrophoresis separates used because of technical
either positive or negative Is the movement of buffer ions
serum proteins into 20 or difficulty in preparing the gel.
depending on pH conditions. and solvents relative to the fixed
more fractions rather than the
support.
usual 6 fractions separated by
cellulose acetate or agarose.
IONTOPHORESIS ZONE ELECTROPHORESIS
- It is widely used to study
Refers to the migration of small Is the migration of charged
individual proteins (e.g.,
ions. macromolecules in a porous
isoenzymes).
support medium.
COMPONENTS
The driving force (electrical power), the STAINS FOR VISUALIZATION OF FRACTIONS (BANDS)
support medium, the buffer, the sample, and ● Amido black
the detecting system. ● Ponceau S
● Oil Red O
● Sudan Black
FACTORS AFFECTING RATE OF MIGRATION
● Fat Red 7B
● Net electric charge of the ● Nature of the supporting ● Coomassie Blue
molecule medium ● Gold/Silver stain – very sensitive even to nanogram quantities of
● Size and shape of the ● Temperature of operation proteins
molecule
● Electric field strength
DENSITOMETRY
It measures the absorbance of stain-concentration of the dye and
PROCEDURE protein fraction
● The sample is soaked in hydrated support for approximately 5
minutes. The support is put into the electrophoresis chamber.
● The support is put into the electrophoresis chamber, which was
previously filled with the buffer. Sufficient buffer must be added
to the chamber to maintain contact with the support.
● Electrophoresis is carried out by applying a constant voltage or
constant current for a specific time. NOTES TO REMEMBER
● The support is then removed and placed in a fixative or rapidly ● Electrophoretic mobility is directly proportional to net charge and
dried to prevent diffusion of the sample. inversely proportional to molecular size and viscosity of the
● This is followed by staining the zones with an appropriate dye. supporting medium.
The uptake of dye by the sample is proportional to sample ● A particle without a net charge will not migrate, and it remains in
concentration. the point of application.
● After excess dye is washed away, the supporting medium may ● The more the pH of the buffer differs from the isoelectric point
need to be placed in a clearing agent. Otherwise, it is completely (pl), the greater is the magnitude of the net charge of that protein
dried. and the faster it 73 will move in the electric field
● The actual distance traveled by a particular protein migrating in
PARTS OF ELECTROPHORESIS an electrical field is determined by the combined magnitudes of
the electromotive force ( a feature of the protein itself and the
POWER SUPPLY pH) and the electroosmotic force ( a function primarily of the
support medium).
Heat is produced when current flows through a medium that has
resistance, resulting in an increase in thermal agitation of the
dissolved solute (ions) and leading to a decrease in resistance and an ISOELECTRIC FOCUSING
increase in current. The increase leads to increases in heat and ● It separates molecules by migration through a pH gradient.
evaporation of water from the buffer, increasing the ionic concentration ● It is ideal for separating proteins of identical sizes but with
of the buffer and subsequent further increases in the current. different net charges.
● pH gradient is created by adding acid to the anodic area of the
BUFFER electrolyte cell and adding base to the cathode area.
● Proteins move in the electric field until they reach a pH equal to
● Two buffer properties that affect the charge of ampholytes are
their isoelectric point.
pH and ionic strength. The ions carry the applied electric current
and allow the buffer to maintain constant pH during
ADVANTAGES
electrophoresis.
● The ability to resolve mixture of proteins.
● The higher the ionic concentration, the higher the size of the
● To detect isoenzymes of ACP, CK and ALP in serum.
ionic cloud and the lower the mobility of the particle. Greater
● To identify genetic variants of proteins such as
ionic strength produces sharper protein-band separation but
alpha-1-antitrypsin.
leads to increased heat production. This may cause
● To detect CSF oligoclonal banding.
denaturation of heat labile protein
CAPILLARY ELECTROPHORESIS
SUPPORT MEDIUM
POTENTIOMETRY
● Is the measurement of electrical potential due to the activity of
free ions-change in voltage
indicates activity of each analyte.
● It is also the measurement of
differences in voltage (potential) at
a constant current.
● It follows the Nerst equation.
COULOMETRY
● Is the measurement of the amount of electricity (in coulombs) at
a fixed potential.
● Is an electrochemical titration in
which the titrant is
electrochemically generated and
the endpoint is detected by
amperometry.
● It follows Faraday’s law.
AMPEROMETRY
● Electrochemical technique that measures the amount of current
produced through the oxidation or
reduction of the substance to be
measured at an electrode held at
a fixed potential
● Is the measurement of the current
flow produced by an
oxidation-reaction.
VOLTAMMETRY
● The measurement of current after which a potential is applied to
an electrochemical cell.
● It allows sample to be pre concentrated, thus utilizing minimal
analyte.
● ANODIC STRIPPING VOLTAMMETRY – for lead and iron
testing.
LECTURE 4: AUTOMATION
Batch testing Turnaround
HISTORY OF AUTOMATED ANALYZER All samples are loaded at the Amount of time to generate one
TECHNICON, 1957 same time, and a single test is result
● Introduction of the first automated analyzer. conducted on each sample.
● “AutoAnalyzer '' (AA) – a continuous flow, single channel, Bar coding
Parallel testing Mechanism for patient/sample
sequential batch analyzer capable of providing a single test
More than one test is analyzed identification; used for reagent
result on approximately 40 samples per hour. concurrently on a given clinical identification by an instrument.
specimen.
Simultaneous Multiple Analyzer (SMA) series Dead volume
● Next generation of Technicon instruments to be developed. Sequential testing Amount of serum that cannot be
● SMA-6 and SMA-12 – analyzers with multiple channels (for Multiple tests analyzed one after aspirated
different tests), working synchronously to produce 6 or 12 test another on a given specimen.
Carry-over
results simultaneously at the rate of 360 or 720 tests per hour Contamination of a sample by a
previously aspirated sample
1970
The first commercial centrifugal analyzer was introduced as a spinoff
technology from NASA outer space research ADVANTAGES OF AUTOMATION
Automated systems that are commonly used in clinical chemistry STEPS IN AUTOMATED ANALYSIS
laboratories today are:
In clinical chemistry, automation is the mechanization of the steps in a
● Aeroset and ARCHITECT analyzers (Abbott Diagnostics)
procedure. Manufacturers design their instruments to mimic manual
● Advia analyzers (Siemens)
techniques. The major processes performed by an automated
● Synchron analyzers (Beckman Coulter)
analyzer can be divided into specimen identification and preparation,
● Dimension analyzers (Siemens)
chemical reaction, and data collection and analysis.
● VITROS analyzers (OrthoClinical Diagnostics)
● Several Roche analyzer lines.
SPECIMEN PREPARATION AND IDENTIFICATION
SPECIMEN PREPARATION
TERMINOLOGIES
Preparation of the sample for analysis has been and remains a
manual process in most laboratories. The clotting time (if using
Centrifugal analysis Open reagent system serum), centrifugation, and the transferring of the sample to an
Centrifugal force moves samples A system other than analyzer cup (unless using primary tube sampling) cause delay and
and reagents into cuvet areas for manufacturers’ reagents can be expense in the testing process
simultaneous analysis utilized for measurement. ● One alternative to manual preparation is to automate this
process by using robotics, or front-end automation, to “handle”
Discrete analysis Closed reagent system
Each sample reaction is A system where the operator can the specimen through these steps and load the specimen onto
compartmentalized. only used the manufacturer’s the analyzer.
reagents. ● Another option is to bypass the specimen preparation altogether
Random access by using whole blood for analysis— for example, Abbott-Vision.
Able to perform individual tests or Pneumatic tube system ● Another approach is to use a plasma separator tube and
panels, and allows for stat Transports specimens quickly
perform primary tube sampling with heparin plasma. This
samples to be added to the run from one location to another
ahead of other specimens. eliminates the need both to wait for the sample to clot and to
aliquot the sample.
SPECIMEN IDENTIFICATION individual test channels, all in one operational step. The loaded
probes pass through a fine mist shower bath before delivery to
The sample must be properly The bar code–labeled tubes are
wash off any sample residue adhering to the outer surface of the
identified, and its location in the then transferred to the loading
probes. After delivery, the probes move to a rinse bath station for
analyzer must be monitored zone of the analyzer, where the
cleaning the inside and outside surfaces of the probes.
throughout the test. The simplest bar code is scanned and the
means of identifying a sample is information is stored in the
by placing a manually labeled computer's memory. The analyzer REAGENT SYSTEMS AND DELIVERY
sample cup in a numbered is then capable of monitoring all Reagents may be classified as liquid or dry systems for use with
analysis position on the analyzer, functions of identification, test automated analyzers:
in accordance with a manually orders and parameters, and ● Liquid reagents may be purchased in bulk volume containers or
prepared worksheet or a sample position. in unit dose packaging as a convenience for stat testing on
computer-generated load list. some analyzers.
Certain analyzers may take test ● Dry reagents are packaged in various forms. They may be
The most sophisticated approach requests downloaded from the bottled as lyophilized powder, which requires reconstitution with
that is commonly used today laboratory information system water or a buffer. Unless the manufacturer provides the diluent,
employs a bar code label affixed (LIS) and run them when the the water quality available in the laboratory is important.
to the primary collection tube. appropriate sample is identified
This label contains patient and ready to be pipetted. Reagent handling varies according to instrument capabilities and
demographics and also may methodologies. Many test procedures use sensitive, short-lived
include test requests. working reagents; so contemporary analyzers use a variety of
techniques to preserve them.
● One technique is to keep all reagents refrigerated until the
SPECIMEN DELIVERY AND MEASUREMENT moment of need and then quickly preincubate them to reaction
SPECIMEN DELIVERY temperature or store them in a refrigerated compartment on the
Most instruments use either circular carousels or rectangular racks as analyzer that feeds directly to the dispensing area
specimen containers for holding disposable sample cups or primary ● Another means of preservation is to provide reagents in a
sample tubes in the loading or pipetting zone of the analyzer. These dried,tablet form and reconstitute them when the test is to be run
cups or tubes hold standards, controls, and patient specimens to be
pipetted into the reaction chambers of the analyzers. Reagents also must be dispensed and measured accurately. Many
● The slots in the trays or racks are usually numbered to aid in instruments use bulk reagents to decrease the preparation and
sample identification.The trays or racks move automatically in changing of reagents. Instruments that do not use bulk reagents have
one-position steps at preselected speeds. The speed unique reagent packaging.
determines the number of specimens to be analyzed per hour. ● In continuous flow analyzers, reagents and diluents are supplied
As a convenience,the instrument can determine the slot number from bulk containers into which tubing is suspended. The inside
containing the last sample and terminate the analysis after that diameter, or bore, of the tubing governs the amount of fluid that
sample. The instrument’s microprocessor holds the number of will be dispensed. A proportioning pump, along with a manifold,
samples in memory and aspirates only in positions containing continuously and precisely introduces, proportions, and pumps
samples. liquids and air bubbles throughout the continuous flow system.
● To deliver reagents, many discrete analyzers use techniques
Nearly all contemporary chemistry analyzers sample from primary similar to those used to measure and deliver the samples.
collection tubes, or for limited volume samples, there are microsample Syringes, driven by a stepping motor, pipette the reagents into
tubes. The tubes are placed in either racks or carousels. Barcode reaction containers. Piston-driven pumps, connected by tubing,
labels for each sample, which include the patient name and may also dispense reagents.
identification number, can be printed on demand by the operator. This ● Another technique for delivering reagents to reaction containers
allows samples to be loaded in any order. uses pressurized reagent bottles connected by tubing to
● Manufacturers have devised a variety of mechanisms to dispensing valves. The computer controls the opening and
minimize this effect—for example, lid covers for trays and closing of the valves. The fill volume of reagent into the reaction
individual caps that can be pierced, which includes closed tube container is determined by the precise amount of time the valve
sampling from primary collection tubes remains open.
PRECISION / REPRODUCIBILITY
● The degree by which a method is easily repeated
● It's easy
● Nakakatipid sa reagent
RELIABILITY
The ability of an analytical method to maintain accuracy and
precision over an extended period of time during which equipment,
reagents, and personnel may change
• Liquid control materials also are available and offer the advantage of
eliminating errors caused by reconstitution.
TERMINOLOGIES
• Stability is critical because the laboratory often purchases a year’s
• Analytical Run – 1 week analytical run. The specimens are assayed
supply of one manufacturing lot or batch. Different batches (or lot
together, evaluated and reported
numbers) of the same material have different concentrations, which
• Delta check – most commonly used on patient-based QC technique.
require new estimates of the mean and the standard deviation (SD).
Checking past results and comparing it to the recent results of the
• The size of the aliquots or vials should be convenient for the analytical
patient. To double check the testing
methods to be monitored.
• Interference experiments – used to measure systematic errors or
inaccuracy that is caused by substances other than the analyte. (Ex:
• Control products are purchased as assayed or unassayed materials.
homoglobin, lipids, bilirubin, anticoagulants, and preservatives)
• Assayed materials come with a list of values or the concentrations or
• Linear/Dynamic Range – it is the concentration range over which the
activities expected for that material.
measured concentration is equal to the actual concentration without the
• Although stated assay values are useful in selection of desired
modification of the method
materials, determination of the mean and the SD in the user’s
• Physiologic limit – absurd value. It helps to detect sample contamination
laboratory is advisable because this process improves the performance
• Point of care testing (POCT) – analytical testing done outside the
characteristics of statistical control procedures.
laboratory. Usually done by non-laboratorian personnels (nurses,
respiratory therapists)
• Quality Patient Care – effectivity of test request forms, clear
instructions for patient preparation, correct turnaround time, appropriate
CONTROL SOLUTIONS
references ranges, panic values. (overall testing)
• General chemistry assay used 2 levels of control solutions, while
• Reference Range/Reference Interval/Reference Value – Value
immunoassays used 3 levels.
obtained by observation or measurement of a particular type of quantity
• To establish statistical quality control on a new instrument or on new
on a reference individual. Normal values/expected values
lot numbers of control materials, the different levels of control material
must be analyzed for 20 days.
• For, highly précised assays such as blood gases, analysis for 5 days
--------------------------------------- 2nd PPT ---------------------------------------
is adequate.
QUALITY CONTROL
CONTROL LIMITS
● The purpose of a clinical laboratory test is to evaluate the
• These are expected values represented by intervals of accepted
pathophysiologic condition of an individual patient to assist with
values with upper and lower limits. If the expected (control) values are
diagnosis and/or to monitor therapy. To have value for clinical decision-
within the desired control limits, the clinicians are assured that the test
making, an individual laboratory test result must have total error small
results are accurate and precise.
enough to reflect the biological condition being evaluated
• Control limits are calculated from the mean and standard deviation (SD).
• Determination of the mean and SD for the unassayed controls is also
QUALITY CONTROL
advisable because this process improves the performance
● Quality control (QC, also called statistical process control) is a
characteristics of statistical control procedures.
process to periodically examine a measurement procedure to verify that
it is performing according to pre-established specifications.
CHARACTERISTICS OF AN IDEAL QC MATERIALS
● Is a system of ensuring accuracy and precision in the laboratory by
• Resemble human sample. (bovine)
including quality control reagents in every series of measurement
• Inexpensive and stable for long periods.
● It involves the process of monitoring the characteristics of the
• No communicable diseases.
analytical processes and detects analytical errors during testing, and
• No matrix effects/ known matrix effects.
ultimately prevent the reporting of inaccurate patient test results.
• With known analyte concentrations (assayed control)
• Convenient packaging for easy dispensing and storage.
OBJECTIVES OF QUALITY CONTROL
• To check the stability of the machine
KINDS OF QUALITY CONTROL
• To check the quality control of reagents.
INTRALAB QUALITY CONTROL INTERLAB QUALITY
• To check technical (operator) errors.
(INTERNAL QC) CONTROL (EXTERNAL QC)
PARAMETERS OF QUALITY CONTROL • It involves the analyses of • It involves proficiency testing
● SENSITIVITY- ability of an analytical method to measure the control samples together with the programs that periodically provide
smallest concentration of the analyte of interest patient specimens. samples of unknown
● SPECIFICITY- ability of an analytical method to measure only the • It detects changes in concentrations to participating
analyte of interest. performance between the present clinical laboratories.
● ACCURACY- is the nearness or closeness of the assayed value to operation and the ―stable‖ • It is important in maintain long-
the true or target value operation. term accuracy of the analytical
• It is important for the daily methods.
monitoring of accuracy and • It is also used to determine
precision of analytical methods. state-of-the-art interlaboratory VARIATIONS-SYTEMATIC ERROR
• It detects both random and performance. CONSTANT ERROR PROPORTIONAL ERROR
systematic errors in a daily basis • Constant systematic error exists • Proportional error exists when
when there is a continual the differences between the test
PROFICIENCY TESTING difference between the test method and the comparative
• Proficiency test: Method used to validate a particular measurement method and the comparative method values are proportional to
process. The results are compared with other external laboratories to method values, regardless of the the analyte concentration
give an objective indication of test accuracy. concentration.
• Proficiency samples: Specimens that have known concentrations of
an analyte for the test of interest. The testing laboratory does not know VARIATIONS
the targeted concentration when tested. CLERICAL ERROR
• Proficiency samples: could be from NRLs or other laboratories to Another reason for outliers in method comparison studies and in daily
test the procedure in the laboratory. practice is mistakes (sometimes termed blunders) or clerical errors
• The majority of clinical laboratories subscribe to the proficiency elements. In the past, this type of error usually arose in relation to
program provided by the CAP. The CAP program has been in manual transfer of results. Today, this kind of error typically is related to
existence for 50 years, and it is the gold standard for clinical laboratory computer errors originating at interfaces between computer systems.
proficiency testing. Errors on test order forms or errors related to handling of order forms
• Additional proficiency programs used in our laboratory include the appear to occur relatively frequently (1% to 5% of recorded cases have
International Sirolimus Proficiency Testing Scheme (IST), the Binding been revealed in systematic studies). In the post analytical phase,
Site, the American Proficiency Institute (API), and the Centers for inappropriate interpretation may take place (e.g., in relation to
Disease Control and Prevention (CDC). erroneous reference intervals).
• If there is no commercial proficiency testing program available for an analyte,
the laboratory is required to implement a non–proficiency test scheme ALLOWABLE ERROR
• For a proficiency test, a series of unknown samples are sent several • 0.05 or 5% that do not affect the prognosis or diagnosis
times per year to the laboratory from the program offering this analysis, • However, tests are performed to answer clinical questions, so to
such as CAP. assess how this error might affect clinical judgments, it is assessed in
• The samples are analyzed in the same manner as patient specimens terms of allowable (analytical) error (Ea).
as much as possible, and the results are reported to the proficiency • Allowable error is determined for each test based on the amount of
program error that will not negatively affect clinical decisions.
• The program then compiles the results from all of the laboratories • If the combined random and systematic error (total error) is less than
participating in the survey and sends a performance report back to Ea , then the performance of the test is considered acceptable.
each participating laboratory However, if the error is larger than Ea, corrections (calibration, new
reagents, or hardware improvements) must be made to reduce the
PROFICIENCY TESTING error or the method rejected.
When a laboratory performs proficiency testing, there are strict
requirements as follows: BASIC CONCEPTS
1. The laboratory must incorporate proficiency testing into its routine
workflow as much as possible. MEASURES OF CENTER
2. The test values/samples must not be shared with other laboratories until • The three most commonly used descriptions of the center of a data
after the deadline of submission of results to the proficiency provider. Referral set are the mean, the median, and the mode.
of proficiency samples to another lab is prohibited as well as acceptance of
• The mean is most commonly used and often called the average. The
proficiency samples from another lab is prohibited.
3. Proficiency samples are tested by bench technical staff who normally median is the ―middle‖ point and is often used with skewed data so its
conduct patient testing; there can be no unnecessary repeats or actions calculation is not significantly affected by outliers. The mode is rarely
outside of how a patient sample would be tested and reported. used as a measure of the data's center but is more often used to
4. Testing should be completed within the usual time it would take for describe data that seem to have two centers (i.e., bimodal).
routine patient testing. • After describing the center of the data set, it is very useful to indicate
5. Proficiency samples are to be performed and submitted on the how the data are distributed (spread). The spread represents the
primary analyzer when there are multiple analyzers in the laboratory relationship of all the data points to the mean. There are four commonly
following CLIA guidelines. used descriptions of spread: (1) range, (2) standard deviation (SD),
6. All proficiency failures and significant shifts and trends must be (3) coefficient of variation (CV), and (4) standard deviation index (SDI).
reviewed, investigated, and resolved with 30 days of final receipt of
proficiency results. Emphasis must be placed on investigating potential • The easiest measure of spread to understand is the range. The range
patient impact during the time of proficiency testing. is simply the largest value in the data minus the smallest value, which
7. Proficiency testing program must demonstrate a dynamic and real- represents the extremes of data one might encounter.
time review time of all proficiency results by the laboratory director and • Standard deviation (also called ―s,‖ SD, or σ) is the most frequently
delegated management personnel. used measure of variation. The SD and, more specifically, the variance
represent the ―average‖ distance from the center of the data (the mean)
METHOD EVALUATION and every value in the data set.
• The value of clinical laboratory service is based on its ability to • The CV allows a laboratorian to compare SDs with different units and
provide reliable, accurate test results and optimal test information for reflects the SDs in percentages
patient management. At the heart of providing these services is the • The SDI is a calculation to show the number of SDs a value is from
performance of a testing method. the target mean. Similar to CV, it is a way to reflect ranges in a relative
• To maximize the usefulness of a test, laboratorians undergo a manner regardless of how low or high the values are.
process in which a method is selected and evaluated for its usefulness
to those who will be using the test. This process is carefully undertaken MEASURES OF SHAPE
to produce results within medically acceptable error limits to help • Although there are hundreds of different ―shapes‖— distributions—
providers maximally manage/treat their patients. that data sets can exhibit, the most commonly discussed is the
• Currently, clinical laboratories more often select and evaluate methods that Gaussian distribution.
were commercially developed instead of developing their own. • The Gaussian distribution describes many continuous laboratory
variables and shares several unique characteristics: the mean, median,
VARIATIONS and mode are identical; the distribution is symmetric—meaning half the
RANDOM ERROR SYSTEMATIC ERROR values fall to the left of the mean and the other half fall to the right with
• Random errors may be caused • Error always in one direction the peak of the curve representing the average of the data. This
by variations in technique. (may be constant or proportional). symmetrical shape is often called a ―bell curve.
• Error varies from sample to • Systematic errors may be due to
sample several factors, including poorly QUALITY CONTROL CHARTS
• Causes include instrument made standards, reagents, • A common method to assess the determination of control materials
instability, temperature variations, instrumentation problems, poorly over time is by the use of a Levey-Jennings control chart.
reagent variation, handling written procedures, or inadequate • Control charts graphically represent the observed values of a control
techniques, and operator staff training. material over time in the context of the upper and lower control limits in
variables relation to the target value. When the observed value falls with the
control limits, it can be interpreted that the method is performed • Multirules establish a criterion for judging whether an analytic process
adequately. is out of control. To simplify the various control rules, abbreviations are
• Analytic errors that can occur can be separated into random and used to refer to the various control rules.
systematic errors. The underlying rationale for running repeated assays • Control rules indicate the number of control observations per analytic
is to detect random errors that affect precision. run, followed by the control amount in subscript. For example, the 13s
rule indicates that a data point cannot exceed 3SDs (3s). If the 13s rule
Gaussian Curve (Bell-shaped Curve) is not triggered, the analytic run will be accepted (i.e., results will be
• It occurs when the data set can be accurately described by the SD reported).
and the mean. • If the QC results are more than 3 SDs (the 13s rule is violated), the
• It is obtained by plotting values from multiple analyses of a sample. run may be rejected and there will be additional investigation. The type
• It is a population probability distribution that is symmetric about the mean. of rule violated indicates what type of error exists. For example, a 13s
• It occurs when data elements are centered around the mean with rule violation may indicate a loss of precision or ―random error‖.
most elements close to the mean.
• It focuses on the distribution of errors from the analytical method • 1 2s - One control observation exceeding the mean ±2s. A warning
rather than the values from a healthy or patient population. rule that initiates testing of control data by other rules.
• The total area under the curve is 1.0 or 100% • 1 3s - One control observation exceeding the mean ±3s. Allows high
sensitivity to random error.
Cumulative Sum Graph (CUSUM) • 2 2s - Two control observations consecutively exceeding the same
• It calculates the difference between Qc results and the target means. +2s or -2s. Allows high sensitivity to systematic error.
• Common method: V-mask • R 4s - One control exceeding the +2s and other exceeding the -2s.
• It identifies consistent bias problems; It requires computer Allows detection of random error. Highest and lowest range
implementation. • 4 1s - Four consecutive control observations exceeding +1s or -1s.
• This plot will give the earliest indication of systematic errors (trend) This allows the detection of systematic error.
and can be used with 13s rule. • 10x - Ten consecutive control observations falling on one side or the
• It is very sensitive to small, persistent errors that commonly occur in other of the mean (no requirement SD size). This allows the detection
the modern, low calibration-frequency analyzer. of systematic error.
• Results are out of control when the slope exceeds 45°or a decision • 7T – we need to reject the analytical run if there are 7 consecutive
(±2.7SD) is exceeded. errors/trends
• 3 1s - we need to reject the analytical run if 3 consecutive controls
Youden/Twin plot exceeds 1sd
• It is used to compare results obtained on a high and low control
serum from the different laboratories.
• It displays the results of the analyses by plotting mean values for one
specimen on the ordinate (y-axis) and the other specimen on the
abscissa (x-axis)
• The points falling from the a center but on the 45 ° line suggests a
proportional error, and points falling from the center but not in the 45°
line suggest a constant error.
MULTIRULES
• The use of the statistical process control chart (Levey-Jennings) was
pioneered by Shewhart in the 1920s. Multirules were formalized by the
Western Electric Company and later applied to the clinical laboratory by
Westgard and Groth.
CCHM LEC LECTURE 3 CHEMICAL PROPERTIES OF CARBOHYDRATES
ANALYTICAL METHODS
● Building up STRUCTURE
● When seen in microscope → it is the most versatile molecule Levels of protein structure
in the body
● Has biochemical reactions catalyzed by enzymes
● Has structural cells and extracellular matrix that surrounds
the cell (e.g collagen)
● Transport of materials (e.g transferrin)
● Receptors of hormones
● Transcription factor
● Nutritionally acquired protein → fish, cheese, meat, egg
SYNTHESIS OF PROTEIN
Three steps in translation
1. Initiation
2. Elongation
3. Termination
2. GLOBULIN
Alteration from B-pleated sheaths
α1-GLOBULINS
Amyloid For diagnosis of Alzheimers
α2-GLOBULINS
β-GLOBULINS
HYPERPROTEINEMIA
Pre-β-lipoprotein Transport lipids (VLDL to TAG) Total Albumin Globulin Conditions Associated
Transferrin Transport iron Protein
Increases in IDA
Decreases in hemochromatosis dehydration
↑ ↑ ↑
Hemopexin Binds with heme, APR
β-Lipoprotein Transfer lipids (LDL & Cholesterol)
β2 –Microglobulin Component of HLS molecule ↑ N ↑
multiple myeloma
monoclonal and polyclonal gammopathies
C4, C3, C1q complement Immune response
METHODS ELECTROPHORESIS
REFERENCE VALUES
KJELDAHL
Acid precipitation (TCA or tungstic acid) of protein with
measurement of total nitrogen
a. Kjeldahlization – conversion of nitrogen to ammonia
b. Ammonia Measurement
● Nessler’s reaction (double iodide of Hg and K)
● Berthelot reaction
REFRACTOMETRY
Measurement of refractive index (velocity of light in air and water)
due to solutes in serum.
BIURET
Formation of violet-colored chelate between Cu2+ ions and
peptide bonds (measured at 540 nm)
Composition:
TOTAL PROTEIN
● Cupric ions – breaks the peptide bonds
● Tartrate salt – keeps copper in solution Turbidimetric Proteins are precipitated as particles,
● Potassium iodide – stabilizes cupric ions methods (SSA, turbidimetry is measured
TCA, spectrophotometrically
benzethonium
DYE BINDING
chloride)
Protein binds to dye and causes a spectral shift in the absorbance
maximum of dye. Biuret Proteins is reacted with Cu2+ forms
● Bromphenol blue colored complex with peptide bond
● Ponceau S Folin-Lowry Initial biuret reaction; oxidation of AA
● Amido black 10B (tyrosine, etc.) residues by Folin Phenol
● Lissamine green reagent; measurement of resultant blue
● Coomassie briliant blue color
Dye binding Protein binds to dye, causes shift in
ALBUMIN METHODS (Coomassie blue, absorption maximum
Ponceau S)
CSF PROTEIN
● Formed in the choroid plexus of the ventricles of the brain by
ultrafiltration of blood plasma
● NV: 15-45 mg/dL
● Abnormally increased – increased permeability of the
capillary endothelial barrier
● Bacterial, viral, fungal meningitis; traumatic tap, disk
herniation, cerebral infarction
● Degree of permeability: Comparison between CSF and
serum albumin
● 2.7-7.3
CCHM FINALS LECTURE 3 SPECIMEN REQUIREMENTS
(12/01/22) TRANS BY: Y. TUAZON
1. Use fasting/non fasting blood sample
NONPROTEIN NITROGEN COMPOUNDS 2. Avoid fluoride or citrate anticoagulants
3. Refrigerate samples
PATHOPHYSIOLOGY
INCREASED CONCENTRATION
Prerenal • Caused by reduced blood flow
azotemia • Congestive heart failure, shock, hemorrhage, dehydration,
increased protein catabolism, high-protein diet
COMPOUND Approximate PLASMA Approximate URINE Renal • Damage of filtering structures of the kidney
Concentration (% of Total NPN) Concentration (% of Excreted N) azotemia • Renal failure and renal disease (glomerular nephritis,
UREA 45-50 86.0 tubular necrosis)
AMINO ACID 25 --- Postrenal • Urinary tract obstruction
URIC ACID 10 1.7 azotemia • Renal calculi, tumors of the bladder or prostate
CREATININE 5 4.5
CREATINE 1-2 --
AMMONIA 0.2 2.8 DECREASED CONCENTRATION
• Low protein intake
• Severe vomiting and diarrhea
UREA • Liver disease
• Pregnancy
• Urea is the major waste product of protein catabolism
• Some urea is reabsorbed by passive diffusion. The amount reabsorbed
depends on the urine flow rate extent of hydration URIC ACID
• <10% of the total urea are excreted through the gastrointestinal tract and
skin • Product of catabolism of the purine nucleic acids in the liver
• Present in the plasma as Monosodium urates (>6.8 mg/dL →
it may precipitate to tissues)
CLINICAL APPLICATION
METHOD OF ANALYSIS
CLINICAL APPLICATION
CHEMICAL METHOD PRINCIPLE
CLINICAL APPLICATION CONVERSION Phosphotungstic acid Uric acid + H3PW12O40 +
Evaluate renal function Blood Urea N (mg/dL) → urea (mg/dL) (Caraway method) Dodecatungstophosphoric acid + O2 →
Asses hydration status 1 urea N → 2.14 allantoin + tungsten blue + CO2
Determine nitrogen balance 0.467 urea → urea N
Diagnose of renal disease 0.357 (mg/dL) → mmol/L
ENZYMATIC METHOD PRINCIPLE
Verify adequacy of dialysis
FIRST STEP Uric acid + O2 + 2H2O –uricase→ allantoin + CO2 + H2O2
Spectrophotometric Decrease in absorbance at 293 nm is measured (uric acid v. allantoin)
METHODS OF ANALYSIS (Blauch and Koch)
Coupled enzyme H2O2 + reagent –catalase→ colored compound
• Proposed definitive method: Isotope-Dilution Mass Spectrometry (IDMS) (I) Catalase
Coupled enzyme H2O2 + indicator dye –peroxidase→ colored compound
ENZYMATIC METHOD PRINCIPLE (II) Peroxidase
FIRST STEP Urea + 2H2O –urease→ 2Nnh4+ + CO8^2
I. GLDH coupled enzymatic-disappearance of NH4+ + 2oxoglutarate and NADH
absorption of NADH is measured at 340 nmn GLDH→ glutamate + NAD+ + H2O REFERENCE INTERVALS
II. Indicator dye a. Nessler’s reaction
NH3+ + pH indicator → color change NH4+ + Nessler’s Salt –gum ghatti→ ADULT Plasma or
yellow solution Serum
MALE 3.5 – 7.2 mg/dL 0.21 – 0.43 mmol/L
b. Berthelot reaction FEMALE 2.6 – 6.0 mg/dL 0.16 – 0.36 mmol/L
NH4+ + alkaline hypochlorite –Na CHILD 2.0 – 5.5 mg/dL 0.12 – 0.33 mmol/L
nitroprusside→ indophenol blue ADULT Urine, 24 hours 250 – 750 mg/d 1.5 – 4.4 mmol/d
III. Conductimetric
NH4+ and CO3^2-
SPECIMEN CONSIDERATIONS
CHEMICAL METHOD PRINCIPLE 1. May be measured using heparinized plasma, serum or urine
I. Fearon’s reaction Iron (III) and Thiosemicarbazide to stabilize color 2. Avoid gross lipemia, high bilirubin concentration and hemolysis
3. Avoid EDTA or flouride additives (affects uricase method)
Urea + Diacetyl Monoxime method (DAM) → Yellow solution 4. Salicylates and thiazides ↑values for uric acid
(Diazine derivative)
PATHOPHYSIOLOGY
REFERENCE INTERVALS
Increased Concentration (Hyperuricemia)
ADULT Enzyme deficiencies
Plasma or serum 6-20 mg/dL 2.1–7.1 mmol/L 1. Lesch-Nyhan syndrome (increased de novo synthesis of urine)
Urine, 24 hours 12-20 g/d 0.43-0.71 mol urea/d Deficient in hypoxanthine-guanine phosphoribosyltransferase (HGPRT)
2. Phosphoribosylpyrophosphate synthetase deficiency
3. Glycogen storage disease type 1 (Glucose-6-phosphatase deficiency)
(Increased triglycerides, Decreased urate excretion) SPECIMEN REQUIREMENTS
4. Frcutose Intolerance (fructose-1-phosphate aldolase deficiency)
(Increased lactate, Decreased urate excretion) Specimen Considerations Specimen Considerations
A. Falsely increase due to 1. Glucose
Increased Concentration (Hyperuricemia) 2. α-ketoacids
1. Hemolytic and proliferative process (e.g. leukemia, lymphoma, etc.) 3. Ascorbate
(Increased metabolism of cell nuclei) 4. Uric Acid
2. Treatment of myeloproliferative disease w/ cytotoxic drugs 5. Cephalosporins
3. Chronic renal disease (Decreased uric acid filtration and secretion) 6. Dopamine
4. Toxemia of pregnancy and lactic acidosis B. Falsely decrease results due to 1. Bilirubin
(Increased binding to renal tubules) 2. Hemoglobin
5. Drugs and poisons 3. Lipemic specimens
6. Purine-rich diet (e.g. liver, kidney, shellfish)
7. Increase tissue catabolism or starvation
REFERENCE INTERVALS
Decreased Concentration (Hypouricemia)
Liver disease
1. Defective tubular reabsorption (Fanconi sydrome)
2. Chemotherapy with azathioprine or 6-mercaptopurine
3. Overtreatment with allopurinol (Decreased de novo purine synthesis)
CREATININE
METHOD OF ANALYSIS
METHOD OF ANALYSIS
2. BIURET METHOD
o Principle: Cupric ions complex the groups involved in the peptide
bond forming a violet colored chelate which is proportional to
the number of peptide bonds present and reflects the total
protein level at 545 nm.
o Most widely used method
o Extensively used by automated analyzer, can measure down
10-15 mg/dL
o Located beneath and attached to the diaphragm protected by o Reagents:
the lower rib cage a. Alkaline copper sulfate
o Held in placed by ligamentous attachment b. Rochelle salt (NaK tartrate)
o Divided into 2 lobes by the falciform ligament c. NaOH and Potassium iodide
a. Right lobe – 6x larger than left love
b. Left lobe 3. FOLIN – CIOCALTEU (LOWRY) METHOD
o It is an extremely vascular organ o Principle: Oxidation of phenolic compounds such as tyrosine,
a. Hepatic artery – 25% of blood, oxygen rich tryptophan and histidine to give deep blue color
b. Portal vein – 75% of blood, nutrient rich o Highest analytical sensitivity
o Reagent:
FUNCTIONS a. Phosphotungstic – molybdic acid or phenol reagent
1. Synthetic function b. Biuret reagent (color enhancer)
o almost all proteins are synthesized except:
a. Immunoglobulin 4. ULTRAVIOLET ABSORPTION METHOD
b. Adult hemoglobin o Principle: the absorbance of proteins at 210 nm is due to
c. vWF absorbance of the peptide bonds at specific wavelengths
o secretes plasma proteins, carbohydrates, lipids, o Proteins absorb light at 210 – 280 nm
lipoproteins, coagulation factors, ketone bodies and o 280 nm: tryptophan, tyrosine and phenylalanine
enzymes
o produces 12g of albumin daily 5. SERUM PROTEIN ELECTROPHORESIS
o metabolism of cholesterol into bile acids o Principle: Migration of charged particles in an electric field
2. Conjugation function o Identification of monoclonal spike of immunoglobins and
o Bilirubin metabolism differentiating them from polyclonal hypergammaglobulinemia
o 200-300 mg is produced daily o Fastest to slowest band
3. Excretory and Secretory function
o Excretory: bile (bile acids or salts, pigments, cholesterol)
o Bile acids (cholic acid and chenodeoxycholic acid) + glycine
→ bile salts
4. Detoxification and Drug metabolism
o Potentially injurious substances absorbed from intestinal
tract and toxic by products of metabolism
o Ammonia (toxic by product) → Urea
5. Storage function
o Storage site for fat soluble and water-soluble vitamins
o Also, for glycogen, released when glucose is depleted
FUNCTION TEST
o Test to assess synthetic function
BCG BCP
Cationic dye
Free of interference from bilirubin
Not significantly affected by hemolyzed samples
6. REFRACTOMETRY METHOD
Used extensively in automated
o Principle: measurement of refractive index of solutes in serum
analyzer from serum albumin
o Alternative to chemical analysis
Used in parallel with biuret
reagent for total protein
7. TURBIDIMETRIC AND NEPHELOMETRIC METHOD
o Principle: formation of a uniform fine precipitate which scatters
CLINICAL SIGNIFICANCE OF ALBUMIN
incident light suspension (Nephelometry) or block light
HYPOALBUMINEMIA
(turbidimetry)
o Reagent: Reduced synthesis Chronic liver disease
a. Sulfosalicylic acid Malabsorption syndrome
b. Trichloroacetic acid Malnutrition
Muscle wasting disease
8. SALT FRACTIONATION Increased loss Nephrotic syndrome (20-30 g/day)
o Principle: globulins is separated from albumin by salting-out Massive burns
procedure Protein losing enteropathy
o Albumin remains in the supernatant can be measured by any Orthostatic albuminuria
routine total protein methods Increased catabolism Massive burns
o A:G ratio = 1.3 – 3:1 Widespread malignancy
o Reagent: Sodium sulfate salt Thyroroxicosis
ALBUMIN
o Inversely proportional to the severity of the liver disease
o In hepatic circulation disorder, albumin is important in
assessment of ascites and plasma oncotic pressure
o Plasma level decline in severe hepatocellular disease last more
than 3 weeks
o ↓ serum albumin = ↓ synthesis
o ↓ total protein + ↓ albumin = hepatic cirrhosis and nephrotic
syndrome
CLASSIFICATION OF JAUNDICE/HYPERBILIRUBINEMIA
1. Pre-hepatic jaundice
- Cause: too much destruction of RBC
- Test result: elevated indirect (B1) bilirubin
2. Post-hepatic jaundice
- Cause: failure of bile to flow to the intestine / impaired
bilirubin excretion
- Test result: elevated direct (B2) bilirubin
3. Hepatocellular combined jaundice
- Cause: hepatocyte injury caused by virus, alcohol, parasite
- Test result: Elevated indirect (B1) and indirect (B2) bilirubin
METHOD OF ANALYSIS
Principle: Ehrlich’s Method
- Urobilinogen + p-dimethylaminobenzaldehyde → red color
o Results are reported in Ehrlich units
o Interfering substances must be removed
o Fresh sample is necessary and must be read
spectrophotometrically within 5 minutes
Increased B1 Increased B2
Gilbert’s syndrome Biliary Obstruction
Crigler-Najjar Syndrome Pancreatic cancer
Hemolytic anemia Dubin-Johnson Syndrome
Hepatocellular disease Alcoholic and viral hepatitis
Lucey-Driscoll Syndrome Biliary atresia
G6-PD deficiency Hepatocellular disease
METHOD OF ANALYSIS
o Hemolyzed specimen = ↑ bilirubin
o Lipemic specimen = ↓ bilirubin
o Stored in dark
o Assay ASAP or within 2-3 hours after collection
o ↓↓ bilirubin = exposure to fluorescent, indirect and direct light
o Icterisia = >25mg/dL
o Unconjugated (B1) bilirubin = ☑accelerator (caffeine/methanol)
o Conjugated (B2) bilirubin = X accelerator
o Standard solution usually made from unconjugated (B1) bilirubin
BILIRUBIN ASSAY
Principle: Van den Berg reaction
- Bilirubin + diazo reagent → azobilirubin