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Serenade Efecto en Canola - Lahlali, 2011
Serenade Efecto en Canola - Lahlali, 2011
To cite this article: R. Lahlali , G. Peng , L. McGregor , B.D. Gossen , S.F. Hwang & M. McDonald
(2011) Mechanisms of the biofungicide Serenade (Bacillus subtilis QST713) in suppressing clubroot,
Biocontrol Science and Technology, 21:11, 1351-1362, DOI: 10.1080/09583157.2011.618263
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Biocontrol Science and Technology,
Vol. 21, No. 11, November 2011, 13511362
RESEARCH ARTICLE
Mechanisms of the biofungicide Serenade (Bacillus subtilis QST713)
in suppressing clubroot
R. Lahlalia, G. Penga*, L. McGregora, B.D. Gossena, S.F. Hwangb and
M. McDonaldc
a
Saskatoon Research Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan,
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Canada; bCrop Diversification Centre North, Alberta Agriculture and Rural Development,
Edmonton, Alberta, Canada; cDepartment of Plant Agriculture, University of Guelph, Guelph,
ON, Canada
(Received 17 March 2011; final version received 24 August 2011)
Clubroot is a serious threat to canola production in western Canada. The
biofungicide Serenade† (Bacillus subtilis QST713) reduced the disease substan-
tially in controlled environment, but showed variable efficacy in field trials. To
better understand how this biofungicide works, two of the product components,
i.e., B. subtilis and its metabolites (product filtrate), were assessed under
controlled conditions for their relative contribution to clubroot control. The
information may be used to optimize the product formulation. The bacterium or
product filtrate alone was only partially effective against clubroot, reducing
disease severity by about 60% relative to untreated controls. In contrast, Serenade
controlled the disease by over 90%. This pattern of response was mirrored in
quantitative PCR assessment on P. brassicae DNA within canola roots; the lowest
and highest amounts of pathogen DNA were found in roots of Serenade
treatment (0.02 and 0.01 ng/g) and controls (0.52 and 13.35 ng/g), respectively,
at 2 and 3 weeks after treatment. During this period, the amount of DNA
changed little in Serenade-treated roots but increased by almost 30-fold in the
control. The product filtrate or B. subtilis also reduced the pathogen DNA
substantially (0.031.16 ng/g). Serenade decreased the germination and viability
of P. brassicae resting spores only marginally. It is suggested that biofungicide
Serenade controls clubroot largely via suppressing root-hair and cortical infection
by P. brassicae zoospores. The bacterial metabolites in the product formulation
possibly assist B. subtilis in rhizosphere colonization and clubroot control by
minimizing the competition from other soil microbes.
Keywords: Plasmodiophora brassicae; Brassica napus; lipopeptide; surfactin;
iturin A; fengycins
Introduction
Clubroot, caused by the obligate pathogen Plasmodiophora brassicae Woronin, is a
serious disease on crucifer crops worldwide (Dixon 2009). In 2003, the disease was
reported for the first time on canola (Brassica napus L.) in central Alberta, Canada
(Tewari et al. 2004), and by 2009, clubroot had been found in more than 456 canola
fields in the province (Strelkov, Manolii, Zequera, Manolii, and Hwang 2010). There
are about 4.7 million hectares of canola in western Canada yearly, and clubroot has
now become a major threat to canola production in the region (Howard, Strelkov,
and Harding 2010).
The life cycle of P. brassicae can generally be divided into two stages: (i) a
primary stage consisting of germination of resting spores, infection of root hairs by
primary zoospores, and development of primary plasmodia and then secondary
zoospores; and (ii) a secondary phase consisting of cortical infection by secondary
zoospores, colonization of cortex, and development of secondary plasmodia that
stimulate root enlargement and gall formation (Ingram and Tommerup 1972). The
short interval between the emergence of primary zoospores and root-hair infection is
part of the life cycle where the pathogen is most vulnerable to adverse environmental
conditions (Dixon 2009).
Recommendations for managing clubroot include fungicide drenches (Naiki and
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Dixon 1987), soil liming (Webster and Dixon 1991), and use of resistant cultivars and
crop rotation (Donald and Porter 2009). Few fungicides are highly effective (Donald
and Porter 2009), and liming is impractical on a large acreage of canola in western
Canada. Most canola cultivars were highly susceptible (Strelkov, Tewari, and Smith-
Degenhardt 2006), but resistant cultivars are now available commercially although
their durability is unknown. The resistance to clubroot is generally race specific
(Diederichsen, Beckmann, Schondelmeier, and Dreyer 2006) and can be eroded when
pathogen race structure changes.
Microorganisms have been explored for biocontrol of clubroot, including the
fungi Phoma glomerata (Arie, Kobayashi, Kono, Gen, and Yamaguchi 1999),
Heteroconium chaetospira (Nairsawa, Tokumasu, and Hashiba 1998), and
Acremonium alternatum (Jaschke, Dugassa-Gobena, Karlovsky, Vidal, and Ludw-
ing-Muller 2010). None of these candidates has been registered for commercial uses.
Several biofungicides available in Canada were assessed recently for clubroot control,
and Serenade† ASO (Bacillus subtilis QST713) was highly effective under controlled-
environment conditions, but inconsistent in field trials (Peng et al. 2011). The
objective of this study was to better understand how this biofungicide worked by
assessing two of the components in the Serenade product for their relative
contribution to clubroot biocontrol, including the impact on resting spores and
suppression of pathogen infection and development in canola roots. The information
can be useful to improving product formulation and delivery for optimal efficacy.
Lyengar, and Venkobachar 1998) agar at 258C for 48 h; bacterial cultures were
scraped off the medium agar and suspended in SDW to about 5 107 CFU mL 1
based on a plating method.
About 3 g of clubroot galls were cut into small pieces (0.50.5 0.5 cm),
immersed in 50 mL of SDW in a beaker for 2 h to soften the tissue, and homogenized
in a Waring blender for 1 min. The resulting slurry was filtered through eight layers
of 0.3-mm nylon cloth, centrifuged at 3500g for 10 min, and the supernatant was
discarded. This process was repeated, and resulting spore pellets were resuspended
with SDW and adjusted to 1 107 spores mL 1 using a haemocytometer.
Resting spores used for germination tests and viability staining were prepared
using the methods described by Strelkov et al. (2006) and Sundelin et al. (2010) with
slight modifications. Briefly, after centrifugation, the pellets of resting spores were
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Resting spores were added to RES amended with 5% of Serenade product, and to
a RES alone as controls. The fungicide fluazinam (Allegro 500F, ISK Biosciences
Corp., Concord, OH) at a 0.5-mL L 1 concentration was tested similarly for
comparisons. Resting spores were suspended (5 105 mL 1) in amended RES in 15-
mL Falcon tubes and incubated at 258C in darkness. The germination was examined
at 2-day intervals for up to 10 days over five replicates of each treatment or control.
Samples were stained with acetic-orcein (1%) or acetic-carmine (1%) (Sigma-Aldrich
Canada, Edmonton, AB) on glass slides, and the germination counted over 100
spores for each replicate using the protocol described by Naiki, Dixon, and Ikegami
(1987) at 1000 magnification using a light microscope. The empty or shrivelled
spores were considered as having germinated (Figure 1).
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Figure 2. Dead (A) and living (B) resting spores of Plasmodiophora brassicae stained with
Evan’s blue. Note that the cell wall and cytoplasm of dead spores were stained in blue and pale
red colours, respectively, whereas the living cells were not stained. Scale bars 5 mm.
Statistical analysis
Analysis of variance (ANOVA) was conducted to assess the impact of the
biofungicide Serenade and its components on DSI and resting spore germination
or viability using SAS (version 9.1, SAS Institute Inc. Cary, NC), a LSD test was
used to separate means when ANOVA was significant (P 50.05). All percentage data
were transformed with Arcsine Square Root prior to statistical analysis to obtain
normal distribution, but non-transformed means are reported in results for ease of
discussion.
Results
Effect of Serenade and its components on clubroot development
On average, the Serenade product formulation reduced clubroot by more than 90%
relative to the pathogen control (Table 1), whereas the product filtrate or B. subtilis
cultural suspension had only about 60% efficacy. At 46 WAT, root enlargement was
substantial in pathogen controls, noticeable in bacterial or product-filtrate treatment,
but generally absent in the Serenade treatment (Figure 3). No clubroot symptom was
seen on non-inoculated plants.
Biocontrol Science and Technology 1357
Table 1. Effect of Serenade and its components on clubroot incidence (%) and disease severity
index (DSI) on canola (n 3).
P. brassicae DNA samples (1 10 3 ng mL 1) extracted from resting spores showed
a single PCR amplicon with 139 bp (data not shown). There was a strong linear
relationship between cycle threshold values and lg DNA concentrations in root
samples (y 5.41 lg [x]23.24; r2 0.997[0]). Threshold fluorescence signal for
the DNA from pure pathogen spores was 0.22 over the concentration range
examined.
The q-PCR assay also detected the single PCR amplicon in canola roots
inoculated with P. brassicae, but not in the non-inoculated roots. This confirmed the
presence of the pathogen in the roots or root hairs at 2 or 3 WAT. Additionally, a
melt-curve analysis showed only one peak in q-PCR results, confirming the
specificity of the primers used. The amount of pathogen DNA detected in inoculated
roots treated with Serenade or its components was substantially lower (P B0.0001)
than that in pathogen-inoculated roots (control) at 2 and 3 WAT (Table 2). The
amount of DNA increased substantially in roots of the pathogen control between 2
and 3 WAT, only slightly with B. subtilis, but not in roots treated with the Serenade
product or product filtrate.
Table 2. The amount of Plasmodiophora brassicae genomic DNA detected in roots treated
with Serenade and its components at 2 and 3 weeks after treatments (WAT) (n3).
Discussion
Clubroot is a difficult disease to control due to the persistence of resting spores in
soil and a complex infection process with the pathogen (Dixon 2009). Biofungicides
can be reasonable candidates against clubroot because some of the agents can
competitively colonize the rhizosphere (Kinsinger, Shirk, and Fall 2003; Bais, Fall,
and Vivanco 2004), thus providing direct root protection. Previous studies have
Serenade product
80
Fluazinam
60
40
20
0
1 2 3 4 5 6 7 8 9 10
Time (days)
Table 3. The viability (%) of Plasmodiophora brassicae resting spores exposed to Serenade
(n 2).
Treatment 2 4 6 8 10
and in a recent study, the commercial biofungicides Serenade† (B. subtilis QST713)
and Prestop† (Gliocladium catenulatum Gilman & Abbott.) were found promising
when applied as a soil drench in controlled environment (Peng, Gossen, Strelkov,
Hwang, and McDonald 2009). It has been known that B. subtilis produces
lipopeptides, including surfactin and iturin A (Romero et al. 2007; Ongena and
Jacques 2008) and these antibiotics were detected in the rhizosphere of cucumber
treated with the B. subtilis QST713 (Kinsella, Schulthess, Morris, and Stuart 2009).
However, it was not clear if these antibiotics in the Serenade formulation would be
sufficient for protecting canola roots or root hairs from infection by zoospores, and if
they are of any assistance to the B. subtilis inoculum in the biocontrol of clubroot.
This information can be useful to optimization of fermentation or formulation
processes for maximum efficacy.
Throughout the study, the product filtrate or B. subtilis alone was only partially
effective, and Serenade was consistently more effective than any of the components.
Possibly the secondary metabolites facilitated the performance of B. subtilis by
minimizing the competition from other soil microbes, thus enabling the bacterium
to establish rapidly on the root surface or in the rhizosphere (Kinsinger et al.
2003). The bacterial colonies may feed on root exudates in the rhizosphere
and continue producing lipopeptides (Kinsella et al. 2009), thus sustaining the root
protection. The lipopeptide surfactin produced by this B. subtilis QST713 can also
be a powerful surface-active agent (Peypoux, Bonmatin, and Wallach 1999),
potentially further adding in biocontrol of clubroot by interfering P. brassicae
zoospore activities (Hildebrand and McRae 1998). Therefore an enhanced amount
of lipopeptides in the Serenade formulation, possibly via an improved fermenta-
tion/formulation processes may increase efficacy of clubroot control by this
biofungicide.
The lipopeptides produced by B. subtilis QST713 are powerful antibiotics and
some B. subtilis strains may also produce fungal cell-wall degrading enzymes and
antifungal volatiles (Arrebola, Sivakumar, and Korsten 2009). However, the
Serenade biofungicide or product filtrate (data not shown) had only limited effect
on the germination of P. brassicae resting spores. In contrast, the fungicide
fluazinam inhibited the spore germination almost completely. In a previous study,
the fungicide calcium cyanamide also inhibited the germination of resting spores
completely (Naiki and Dixon 1987). These results suggest that, unlike these
fungicides, the lipopeptides and B. subtilis QST713 inoculum in the Serenade
product are not sufficiently effective against P. brassicae resting spores. The slightly
1360 R. Lahlali et al.
remain effective in the soil for some time, which may warrant further investigations
in product formulation and delivery timing in relation to duration of the product
activity in field soils.
The q-PCR assay adopted from Sundelin et al. (2010) provided rapid detection
and quantification of P. brassicae in early stages of root infection. A separate study
showed that the peak of canola root-hair infection would occur at about 2 WAT at
208C (Sharma, Gossen, and McDonald 2010). The significant less amounts of P.
brassicae DNA at 2 and 3 WAT in canola roots treated with Serenade or its
components, relative to the pathogen control, indicates that these treatments possibly
control clubroot via the reduction of root-hair and cortical infection. The amount of
P. brassicae DNA detected at this stage was correlated with the frequency of root-
hair infection (r 0.86) assessed microscopically (data not shown). At 3 WAT, the
amount of P. brassicae DNA in the pathogen control had increased substantially
from 2 WAT, which potentially reflected greater infection of cortical tissues and the
development of P. brassicae plasmodia in the cortex. In contrast, the DNA in roots
treated with Serenade or its components increased only slightly or not at all within
the period, indicating a lower level of infection and pathogen development. The
amount of P. brassicae DNA at 3 WAT was positively correlated with final clubroot
severity index (r0.99, P 50.001), confirming that the greater amount of infection
or pathogen development also contributed to the disease severity observed later. The
q-PCR technique provides an early assessment on P. brassicae infection and
development in response to biocontrol treatments.
To control clubroot, a treatment may be aimed at killing or inhibiting resting
spores, preventing infection from zoospores, or blocking pathogen development in
root hairs and cortical tissues (Naiki and Dixon 1987). Our results indicate that the
biofungicide Serenade has limited impact on P. brassicae resting spores and its
efficacy on clubroot is possibly due to the antibiotic and surfactant effects on highly
sensitive zoospores. The partial efficacy of the product filtrate or bacterial inoculum
towards clubroot may point to an additive effect between the two components; the
metabolites (lipopeptides) in the Serenade product, in addition to their direct impact
on zoospores, may also assist B. subtilis in colonizing the rhizosphere by minimizing
the competition from other soil microbes. It may be desirable to optimize lipopeptide
yields in the Serenade product by tweaking the fermentation process for maximum
efficacy against clubroot. Product formulation and delivery may also be investigated
for better targeting the peaks of zoospore releases.
Biocontrol Science and Technology 1361
Acknowledgements
We thank Terry Tran and Jehn Francisco for technical assistance. We also acknowledge
Saskatchewan Agriculture Development Fund and SaskCanola for partial funding support to
this research.
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