GASTROINTESTINAL VIRUSES Based on the proteins present in these shells,
INTRODUCTION rotavirus is further classified into seven distinct groups, A through G; wherein groups A, B, and C cause human disease. Group A - associated with acute gastroenteritis in humans and animals. Group B - was detected in humans, cattle, sheep, pigs, dogs, and rats. Group C - infects pigs, humans, cattle, dogs, and ferrets. Rotavirus is now recognized as the major causative agent of infantile severe gastroenteritis throughout the world. Gastroenteritis caused by rotavirus can occur in children of all ages but is most common in infants from 6 months to 3 years old. Symptoms: Rotavirus The disease is characterized by sudden onset of vomiting, Norovirus (Norwalk Virus) followed by explosive, watery diarrhea and moderate to Adenovirus high fever, often accompanied by dehydration. Astrovirus The severity of the disease often is worse for Poliovirus children in developing countries because of ROTAVIRUS malnutrition and limited or delayed health care. CHARACTERISTICS LABORATORY TESTS Rotavirus is a genus in the family Reoviridae that is Rotavirus can be detected directly in the stool using: known as the leading cause of severe diarrhea in children Latex Agglutination - offers rapid results with worldwide and it is commonly called Reovirus. limited laboratory equipment, an advantage in The reoviruses were first isolated from developing countries where resources are limited. respiratory and enteric specimens and therefore Nucleic acid detection PCR assays - for rotavirus are referred to as respiratory-enteric-orphan alone or in multipathogen panels. viruses (reoviruses). Antigen-detection Immunoassays on stool Reoviruses infect most mammalian species and specimens - to rapidly detect rotavirus RNA or are readily detected in water contaminated with antigens. animal feces. Rotavirus is difficult to cultivate from human specimens. Common human pathogens of this family Viral isolation is not normally attempted. include the rotaviruses and the agent of Specimen Collection: Colorado tick fever. Whole stool is the preferred specimen. Rotaviruses grow in the cells lining the intestines, where Collect a minimum of 1 mL of stool for basic confirmatory they give rise to acute gastroenteritis, particularly testing; 2 mL or more may be needed for additional conditions known as “infantile diarrhea” or “winter testing, such as genotyping. diarrhea.” A stool specimen should be obtained within 48 hours of The Latin word rota means “wheel”, and thus rotaviruses hospital admission to avoid detection of nosocomially are named for their wheel-like appearance, which is acquired infections. apparent under a microscope. Avoid using rectal swabs or swabs placed in bacterial media, which are not optimal for rotavirus detection or characterization. Specimen Handling: Stool specimens should be placed in sterile screw-top containers, and properly labeled. Samples can be stored temporarily at 4–8°C for up to one month. Ice packs can be used to keep samples cool. Freeze-thaw cycles should be avoided where possible. If prolonged storage is necessary, store at -70°C, as evidence suggests that the ability to characterize rotaviruses declines during storage for years at -20°C. Transmission electron micrograph of intact rotavirus particles. This If stool samples are also tested for bacterial or parasitic digitally colorized image reveals more of the structure of rotavirus virions (viral particles). pathogens by conventional methods, the specimens should be transported to the lab within two hours of Rotaviruses are nonenveloped, double-stranded RNA collection and placed on appropriate media. viruses composed of three concentric protein shells, the Specimens should then be stored in a freezer at -20°C or outer shell, the inner shell, and the core. colder until testing is performed.
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GROUP 12 - GASTROINTESTINAL VIRUSES | 3 YB-2 EPIDEMIOLOGY Human adenoviruses belong to the genus Rotaviruses are transmitted by the fecal-oral route, Mastadenovirus (encompassing all mammalian although airborne transmission has been suspected as adenoviruses) and are further divided into seven the cause of nosocomial infections and outbreaks in subgroups (A to G) based on their hemagglutination nursing homes, hospitals, and daycare centers. characteristics. Many outbreaks probably develop when infected Structure: food handlers contaminate foods that require no The adenovirus particle consists of an icosahedral protein further cooking, such as salads, sandwiches, and shell surrounding a protein core that contains the linear, fruits. double-stranded DNA genome. The usual sanitary measures that prevent The shell, which is 70 to 100 nm in diameter, is made up infection by bacteria or parasites, such as cooking of 252 structural capsomeres. The 12 vertices of the and use of antimicrobial cleaners, often fail to icosahedron are occupied by units called pentons, each control rotavirus contamination. of which has a slender projection called a fiber. Rotaviruses can infect domestic and wild animals, The 240 capsomeres that make up the 20 faces and the providing further opportunities for spreading edges of the isocahedron are called hexons because they infection. form hexagonal arrays. In countries with a temperate climate, such as the United NOTE: The Roman numerals refer to the standard States, acute gastroenteritis due to rotavirus is most designations of the viral structural proteins according to their frequent during the cooler months: major outbreaks decreasing molecular masses. FP stands for fracture plane in occur between December and June. freeze etching. In tropical areas, infection occurs year-round. The peak age of risk runs from six months to two years. PREVENTION AND CONTROL The two rotavirus vaccines approved for use in infants in the United States are safe and effective. During the first year of an infant’s life, rotavirus vaccine provides 85% to 98% protection against severe rotavirus illness and against hospitalization from rotavirus illness, and 74% to 87% protection against rotavirus illness of any severity. The CDC recommends routine vaccination of infants with either of the two available vaccines: RotaTeq® licensed in 2006, is given in three doses at ages 2 months, 4 months, and 6 months Rotarix® licensed in 2008, is given in two doses at LABORATORY TESTS ages 2 months and 4 months Laboratories can detect and type human adenoviruses using: The vaccines differ in how they are made and the Molecular detection (e.g. PCR) number of doses, but both are given orally. Partial or full genome sequencing More recently, another live oral monovalent vaccine Antigen detection (ROTAVAC®) was licensed in India after it was found to be Virus isolation effective in a large clinical trial. This vaccine is given in Virus neutralization with type-specific antisera three doses to infants. Specimen Collection: As part of a comprehensive package of diarrhea The types of specimens you should collect for human prevention and treatment measures that include access adenovirus detection depend on the patient’s clinical to safe water and sanitation as well as early treatment presentation and type of infection. To improve human with rehydration therapy. Vaccines are the most effective way to prevent adenovirus detection, you should collect specimens within a rotavirus diarrhea. week of symptom onset: ADENOVIRUS Respiratory Infections: For respiratory infections, you CHARACTERISTICS should typically collect upper respiratory specimens such The adenoviruses are common pathogens of humans and as a nasopharyngeal swab and/or oropharyngeal (throat) animals. Moreover, several strains have been the subject swab. If there is evidence of a lower respiratory infection, of intensive research and are used as tools in mammalian you should also collect a lower respiratory specimen such molecular biology. as sputum. In some instances, a serum specimen may be The family Adenoviridae is divided into two Genera, the helpful. mammalian adenoviruses (astadenoviruses) and the Eye Infections: If there is clinical evidence of a avian adenoviruses (aviadenoviruses). The adenoviruses conjunctival or eye infection, you should collect a are named after the human adenoids, from which they conjunctival swab. were first isolated. Gastroenteritis Infections In permissive cells, the virus multiplies productively and kills the host cell. Other cells are semipermissive, allowing replication at low efficiency, whereas in still others replication is blocked and the infection is abortive.
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GROUP 12 - GASTROINTESTINAL VIRUSES | 3 YB-2 EPIDEMIOLOGY NOROVIRUS (NORWALK VIRUS) The main target for human adenoviruses is the CHARACTERISTICS respiratory tract. Family: Caliciviridae Various adenoviruses can also cause acute follicular Common Name: Caliciviruses (Norovirus) conjunctivitis, epidemic keratoconjunctivitis, and, less (formerly known as Norwalk-like viruses, named frequently, cystitis and gastroenteritis. after Norwalk, Ohio) In infants, the most common clinical manifestations of Members of the Norovirus and Sapovirus genera adenovirus infections are acute febrile pharyngitis and are the primary cause of viral gastroenteritis in pharyngeal-conjunctival fever. humans and are referred to as the human In military recruits, acute respiratory disease is the caliciviruses (HuCV). Previously called “Norwalk- predominant form of adenovirus disease, with like viruses” and “Sapporo-like viruses,” the viruses adenovirus pneumonia as a not infrequent complication. were named after their prototype strains, the The virus is probably transmitted via droplets of Norwalk virus and the Sapporo virus, respectively. respiratory or ocular secretions. These viruses are now referred to as the norovirus and sapovirus. Acute follicular conjunctivitis - is a mild eye infection Caliciviruses are small (30-38 nm), rounded, most commonly due to a bacterial or viral infection. nonenveloped, single-stranded, positive RNA Chlamydia and molluscum contagioscum are among the viruses that cause acute gastroenteritis in humans. most common causes. Follicular conjunctivitis is typically Norovirus is a type of single-stranded, non-enveloped a short-term infection that goes away after a few weeks RNA virus known as “Norwalk-like viruses” (NLV), after without treatment. the first outbreak in Norwalk, Ohio. Keratoconjunctivitis (also sometimes referred to as viral The first norovirus outbreak occurred in Norwalk, keratoconjunctivitis) is a highly contagious viral infection Ohio, USA, in a school in 1968. For this reason, the of the eye. Symptoms can last up to two weeks or more. first strain of norovirus was known as the Norwalk It is caused by adenoviruses and there is no specific virus. treatment. Genotype GII is the most common in humans, accounting Pharyngoconjunctival fever is characterized by the for 95% of all infections. concurrent presence of fever, pharyngitis, and These viruses are further classified into six conjunctivitis. It is caused by adenovirus (serotypes 3 and genogroups (GI-GVI) based on the sequence of the 7) and usually affects children younger than 10 years. major capsid protein, with only three (GI, GII, and GIV) known to cause human disease. Among these, (GV infects mice; GIII infects cattle.) Noroviruses are the most common cause of acute gastroenteritis (stomach flu) in humans, accounting for more than 60% of cases. It affects people of all ages, but it causes severe acute gastroenteritis in children under the age of five. Norovirus is the most common cause of illness and outbreaks due to contaminated food.
PREVENTION AND CONTROL
Stay home when you are sick. Cough and sneeze into a tissue or your upper shirt sleeve, not your hands. Avoid sharing cups and eating utensils with others. Refrain from kissing others. Wash your hands often with soap and water for at least 20 seconds, especially after using the bathroom. Frequent hand washing is especially important in Signs and Symptoms: childcare settings and health care facilities. Nausea Vomiting Maintain proper chlorine levels to prevent outbreaks. Diarrhea Stomach pain Treatment Headache Fever There are no approved antiviral medicines and no Body aches specific treatment for people with adenovirus infection. (Symptoms usually appear 12 to 48 hours after exposure Most adenovirus infections are mild and may be to the virus and last one to three days.) managed with rest and over-the-counter pain medicines (If you have norovirus, you’ll feel very sick. This can cause or fever reducers to help relieve symptoms. Always read you to throw up and have diarrhea. When you’re unable the label and use medications as directed. to keep nutrients in your body, you’re at risk of dehydration.)
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GROUP 12 - GASTROINTESTINAL VIRUSES | 3 YB-2 the acute phase of illness or for large or protracted outbreaks. If testing occurs within 2 to 3 days or within 2-3 weeks, specimen should be refrigerated (4°C) and frozen (-20°C), if testing occurs beyond this times. If testing occurs within 2 to 3 days from collection for whole stool and Cary-Blair specimens, and within 2 to 3 weeks for stool specimens, samples should be refrigerated at 39°F (4°C). If testing occurs beyond these times or are to be archived, samples should be frozen ideally at -94°F (-70°C) or at -4°F (-20°C) if storage at -94°F (-70°C) is not available. Vomitus Mode of Transmission: Samples should always be stored frozen at -4°F (- Fecal-Oral Transmission 20°C) or at -94°F (-70°C). Close contact with someone who has the virus. Serum Having direct contact with someone with norovirus, Not recommended for routine laboratory diagnosis. such as by caring for them, sharing food or eating Acute-phase serum specimens should be utensils with them, or eating food handled by collected during the first 5 days after the them. symptoms start. Touching contaminated surfaces and then touching your Convalescent-phase specimens should be mouth or nose. collected during the third to fourth week after Eating or drinking contaminated foods or beverages. the symptoms start. Food is placed on a counter or surface that has LABORATORY DIAGNOSIS poop or vomit particles on it. Diagnostic tests are available at all public health laboratories Tiny drops of vomit from a person with norovirus and many clinical laboratories, and most use reverse spray through the air and land on the food. transcription- real-time polymerase chain reaction (RT-qPCR) Food is grown with contaminated water, such as assays to detect norovirus. oysters, or fruit and vegetables are watered with contaminated water in the field. RT-qPCR Assays The preferred method to detect norovirus because they are very sensitive and specific. Multiplex Gastrointestinal Platforms Commercial platforms for detection of multiple gastrointestinal pathogens. A multiplex real-time PCR test, able to detect 19 stool bacterial, viral and parasitic pathogens Enzyme Immunoassays Rapid commercial enzyme immunoassays (EIAs) that detect norovirus antigen in stool samples. However, these kits have poor sensitivity (50 to 75%) Samples that test negative should be confirmed by a second technique, such as RT-qPCR. Thus, EIA kits should not replace RT-qPCR during outbreak investigations. EPIDEMIOLOGY Norovirus has been the leading cause of acute LABORATORY TESTS gastroenteritis outbreaks around the world since 2002. CLINICAL SPECIMEN A highly contagious virus that most people will Stool contract five times in their lifetime. Hospitalization Stool specimens should be collected during the acute and death are the most serious consequences of phase of illness (up to 72 hours after symptoms start) the disease, while the stool is still liquid or semisolid. The greatest They are far more common in children and the elderly, as amount of virus is shed during the acute phase of well as in low- and middle-income countries. In addition, illness. it is a common cause of endemic diarrhea. Norovirus can sometimes be detected in stool Norovirus is responsible for one out of every five cases of specimens that are collected later in the illness acute gastroenteritis (inflammation of the stomach or or after the symptoms have resolved (up to 7 to intestines), which causes diarrhea and vomiting around 10 days after onset). The number of specimens the world. collected should be increased if collected after Each year, an estimated 685 million cases of acute gastroenteritis are caused by norovirus. Annually, approximately 200 million cases are seen among GROUP 12 | APOSTOL, DIMARUKOT, HUMARANG, RABANO 4 GROUP 12 - GASTROINTESTINAL VIRUSES | 3 YB-2 children under the age of five, resulting in an estimated 50,000 child deaths, the majority of which occur in developing countries. Norovirus kills over 200,000 people each year and costs the global economy more than $60 billion. Norovirus illness can occur at any time of year, but outbreaks are more common in colder climates during the fall and winter months. The illness is easily transmitted in crowds, such as schools, hospitals, childcare facilities, nursing homes, cruise ships, and passenger trains. PREVENTION AND CONTROL Wash hands frequently with soap and water. Handle and prepare food safely. Do not prepare and handle food or care for others when you are sick. Clean and disinfect surfaces. Human Astrovirus Wash laundry well. Despite having nothing to do with influenza, it is Treatment: occasionally referred to as a "stomach bug" or "stomach There is no specific medicine to treat people with flu." norovirus illness. Most cases are short-lived and mild. Drink plenty of liquids. The main symptom of an astrovirus infection is mild, If you have norovirus illness, you should drink watery diarrhea, but can also cause nausea, vomiting, plenty of liquids to replace fluid lost from vomiting fever, lethargy, and stomach discomfort. and diarrhea. This will help prevent dehydration. Most of the diseases are self-limiting. Sports drinks and other drinks without caffeine or Some people may have an astrovirus that is alcohol can help with mild dehydration. However, asymptomatic. these drinks may not replace important nutrients Incubation period: 4-5 days. and minerals. Oral rehydration fluids that you can Mode of Transmission: get over the counter are most helpful for mild The disease is very contagious dehydration. The fecal-oral route is the most typical way that ASTROVIRUS astrovirus spreads. CHARACTERISTICS It can also occur by ingestion of contaminated water and Family: Astroviridae food. Genus: Touching contaminated surfaces or objects. Mamastrovirus: Natural hosts are humans, Diagnosis and Sample Collection: mammals and vertebrates. Physicians rarely test for astrovirus, but instead diagnose Avastrovirus: Natural hosts are birds. it based on the symptoms or by ruling out another Genome: ranging from 7 to 9 kb (kilobase) medical condition. If the symptoms are severe or the patient has a The Greek term “astron”, which means “star”, is the weakened immune system, they will be ordered to do a source of the family name. stool testing. Astrovirus looks to have a star-like form when examined Obtain an adequate amount of feces (1-2 g or mL for a under a microscope (electron microscopy) because of liquid sample). It is best to gather stool samples in dry, their protruding spikes, which extend around 41 nm from clean containers without any transport medium or the capsid surface. preservatives. Before testing, the samples can be kept for Astroviruses are positive-sense, unsegmented RNA one to two days in a refrigerator at 2-4°C/36-40°F. viruses. LABORATORY TESTS The sample will be sent to a lab where technicians will look for the presence of astrovirus. A few tests they could employ are: Enzyme immunoassay (EIA) test - This test detects viral antigens (unique elements of the virus) in stool samples. Polymerase chain reaction (PCR) test - This test finds the virus's genetic material in stool samples. Both tests are extremely sensitive, detecting even trace amounts of antigens (in the EIA test) or viruses (in the PCR test) in the feces. EPIDEMIOLOGY Human astroviruses have been regarded as one of the main causes of viral acute gastroenteritis in infants since their discovery in 1975.
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GROUP 12 - GASTROINTESTINAL VIRUSES | 3 YB-2 The likelihood of zoonotic transmission between human and animal astroviruses is increased by the genetic similarity between certain of these viruses, even if it has not been definitively identified. Astrovirus can affect anyone, although it's more prevalent in: Children under 5 years old. Adults who are above 65 years old. Individuals whose immune systems have been weakened (by HIV, some malignancies, immunosuppressive drugs, etc.). Circulating vaccine-derived poliovirus (cVDPV): This is Astrovirus outbreaks can occur in childcare centers uncommon, although it has been on the rise in recent and long-term care institutions when a high years due to poor immunization rates in communities. concentration of at-risk individuals congregate due POLIOMYELITIS to certain risk factors. Infections were recognized as early as the 1800s, where fever-accompanied paralysis were reported. Acute flaccid paralysis, also known as relaxed or "rag Treatment: doll" paralysis, struck thousands of individuals, mostly Astrovirus is not treated with any antiviral medication. children, making it difficult for them to breathe. Individuals with healthy immune systems will often The virus can infect a person's spinal cord and cause recover without medical intervention. paralysis. But if the patient is experiencing diarrhea, it's important The more severe symptoms affecting the brain and spinal for them to stay hydrated and attempt to obtain as much cord are less common in individuals infected with the nourishment as they can. Good options include water, poliovirus. broth, sports drinks, and oral rehydration solutions (like Symptoms: Pedialyte®). Meningitis: Infection of the membrane around the brain Diarrhea can be treated with over-the-counter drugs such and/or spinal cord. as loperamide (Imodium®) and bismuth subsalicylate Paresthesia: The feeling of pins and needles in the legs. (Pepto-Bismol®, Kaopectate®). Paralysis: The most severe symptom. The inability to The physician may advise oral or IV hydration, as well as move portions of the body or weakness in the arms, legs, antidiarrheal drugs, if the symptoms are severe. or both. PREVENTION Types of Poliomyelitis: Wash hands before and after eating. Abortive poliomyelitis: The mildest form. If you have diarrhea, avoid swimming. When your Nonparalytic poliomyelitis: Symptoms are more severe diarrhea stops, wait two weeks before swimming. than abortive, but not as bad as paralytic. If you swim in lakes, rivers, or public pools, try not to get Paralytic poliomyelitis: The most severe; may result in water in your mouth. permanent paralysis of certain muscle groups, including Avoid consuming raw milk or unpasteurized water. breathing muscles and leg muscles. POLIOVIRUS Post-polio syndrome (PPS): Occurs 15-40 years after the CHARACTERISTICS infection and recovery. Family: Picornaviridae Genus: Enterovirus Causes poliomyelitis The Greek words "polio," which means "gray," and "myelon," which means "marrow," are the source of the phrase "poliomyelitis.” The diameter of poliovirus is between 25 and 30 nm. The majority of poliovirus infections are asymptomatic. A sore throat, fever, fatigue, nausea, headache, and stomach discomfort are among the flu-like symptoms that affect about 1 in 4 (or 25 out of 100) persons infected with the poliovirus. Usually lasting two to five Mode of Transmission: days, these symptoms eventually are self-limiting. Poliovirus is very contagious. Types of Poliovirus: It resides in the intestines and throat of an infected Wild poliovirus (WPV): The most commonly known form individual. of the poliovirus. It spreads through person-to-person contact. Poliovirus 1: Only existing poliovirus in the world The illness is transmitted by the fecal-oral route. that causes paralyzation In unsanitary settings, it can contaminate food and drink. Poliovirus 2: Eradicated Can also be transmitted through droplets from an Poliovirus 3: Eradicated infected person's cough or sneeze (less common). Diagnosis and Specimen Collection:
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GROUP 12 - GASTROINTESTINAL VIRUSES | 3 YB-2 The physician will admit a patient suspected of having According to the recommended immunization schedule, polio immediately. all children should get vaccinations, whether or not they Then they will perform a thorough physical examination, are included in the mass immunization campaign. obtain a detailed medical history including vaccination The reason behind the low incidence of paralysis due to history and travel history, collect samples (stool, throat infections remains unknown. swab, blood, urine, and spinal fluid), and order an MRI to An individual with polio is more likely to become view images of the spinal cord. paralyzed if they have some significant risk factors. These consist of: Immune deficiency Pregnancy Intramuscular injections, Tonsillectomy such as medications Intense workouts Injury The people who are most at risk of contracting the disease are those who are not vaccinated against polio and are exposed to the virus. Treatment: Paralytic polio has no known cure and no particular treatment. Instead, they can receive supportive care to relieve Stool samples are where poliovirus is most likely to be symptoms such as resting, fluids and pain medication. found. Iron lung: A type of negative pressure ventilator (NPV), a In order to maximize the chances of isolating the virus, mechanical respirator that surrounds the majority of the two stool samples should preferably be taken within two body and modifies the interior air pressure to encourage weeks, ideally separated by 24 hours. breathing. The oropharynx is typically where the virus first appears during an infection. Occasionally can the virus be separated from CSF in aseptic meningitis patients. The virus may be isolated from blood during the first phase of viremia, which occurs three to five days after infection, although this is not essential to diagnosing. LABORATORY TESTS Culture: The most sensitive test for determining the presence of poliovirus infection is virus isolation in culture. Stool specimens are the most likely source of poliovirus isolations. Moreover, it could be separated from pharyngeal swabs. Intratypic differentiation: Using a virus obtained in culture as the starting material, real-time reverse transcription PCR is used to distinguish between potentially wild strains and vaccine-like strains (a process PREVENTION known as "intratypic differentiation"). Polio can be prevented by two types of vaccines: Genome sequencing: The poliovirus genotype is verified Inactivated poliovirus vaccine (IPV) - Administered and its geographic origin is identified. as an injection in the patient's leg or arm, Serology: It can be useful in confirming the diagnosis of depending on their age. paralytic poliomyelitis, especially in cases when a Oral poliovirus vaccine (OPV) - It is still widely used patient's immunization history is unknown or suspected. across the world. As soon as the illness is suspected, an acute serum Maintain proper hand hygiene by washing hands often sample should be taken, and three weeks or more later, a with soap and water. convalescent specimen. Alcohol-based hand sanitizers do not destroy the EPIDEMIOLOGY poliovirus. Poliomyelitis in the Philippines The Philippines had not experienced any polio-related illnesses over the past nineteen years. A polio epidemic was announced in the Philippines on September 19, 2019 that started in Mindanao and Manila. A comprehensive outbreak response, including mass polio vaccination rounds started in the same year, is being worked on by the Philippine Department of Health and its partners.