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Kim AndrewJoun Paper
Kim AndrewJoun Paper
Table of Contents
.
Introduction ................................................................................................................................ 3
Extraction ..................................................................................................................... 6
Creating an Artificial War Polluted Soil Model for Post-war Soil .............................. 6
Cells ..................................................................................................................................... 7
RT-PCR ....................................................................................................................... 12
Results ...................................................................................................................................... 14
Acknowledgements .................................................................................................................. 21
References ................................................................................................................................ 22
3
With the prolonging of the Russia-Ukraine war in current date, the pollution and
damaged water supply and sewage systems as well as other direct exposure to war-related
June 2022, more than 25 major Ukrainian freshwater industries had been damaged or
In addition to the damage of such freshwater industries, continued war has caused
imports of medicines to Ukraine in 2022 to decline 38% year-on-year to $1.9 billion from
$3.1 billion after a five-year growth (Interfax, 2023). Such an occurrence makes the
waterborne diseases that increase from the contaminated sewage systems hard to treat,
causing active-war areas such as Ukraine to have no simple way to recover from illnesses.
Among these illnesses that become hard to treat, one of the most concerning ones are
pulmonary diseases. There is proof that pulmonary diseases in general have increased due to
past wars, and Ukraine currently has the fourth‐highest Tuberculosis (TB) incidence in the
WHO European region (Paul et al., 2023). Not only Tuberculosis but other pulmonary
diseases such as Chronic obstructive pulmonary diseases (COPD) result due to war
In order to treat these diseases that occur in a war-polluted area without many imports
of medication, a local solution that is tolerant to the extreme conditions of pollution had to be
found. Of those, the local Evening primrose (Oenothera biennis) plant was found to be a
hardy plant which proliferates throughout most biomes excluding Greenland and Antarctica
due to its high tolerance for extreme temperatures (GBIF, 2022). Also, the Evening primrose
has commonly been used in past efforts of curing diseases arising from war-pollution, as it
has been proven to be able to treat and prevent salmonella and staphylococcus (Zhang et al.,
4
2020).
In common pulmonary diseases, the first line of defense against the infection would
be the immune system, making it a pertinent part to investigate in the study (Vijay, 2020).
Apoptosis is also an important aspect to consider, since once cells are infected, apoptosis
controls and prevents the disease from harming different areas of the lungs (Schmidt &
Tuder, 2010).
Therefore, the main objective of the study was to determine whether Evening
primrose extracts either provide a direct treatment of the disease by inducing apoptosis, or an
indirect preventive method through the immune system for the pulmonary diseases linked to
Considering the objective of the study, it was interesting to note that the Evening
primrose mainly contains the amino acid tryptophan and has been known for being able to
cure certain inflammatory disorders (Timoszuk et al., 2018). The oil extract from the Evening
primrose also contains an unusually high content of essential fatty acids and gamma-linoleic
Figure 1
In the study, the flower, leaf, and oil parts of the Evening primrose were chosen for
examination. Commonly, the flower has been known for its sedative properties and for acting
as a treatment for gastrointestinal disorders (Mehmood & Ahmad, 2019). The leaf is also well
known for treating asthma and digestive problems (Timoszuk et al., 2018). Lastly, the oil
extracts are commonly used to treat acne, eczema, dry skin, while also having properties that
help with blood vessel dilation and the prevention of blood clotting (Mehmood & Ahmad,
2019).
The cells used in the research include the A549 cell line, which is commonly used
when studying pulmonary diseases and cancers, to determine if the Evening primrose could
act as a direct treatment to affected cells. The THP-1 cell line was also used, which is a
monocyte that is commonly used for immunology research, to examine the anti-inflammatory
properties of the Evening primrose. Additionally, treatments were also tested directly on
gram-negative bacteria such as Shigella flexneri, Escherichia coli, Bacillus bravis, and Vibrio
carchariae, which is known for being a marine family of bacteria that causes Pulmonary
To evaluate the curing and preventing properties of the Evening primrose, expression
of genes signifying apoptosis and anti-inflammation would be examined. The primers used
were Bax and Bcl-2 to measure apoptosis, as it has been proven that the high ratio of Bax to
Bcl-2 causes a release in cytochrome C and therefore increases apoptosis (National Library of
inflammatory genes such as IL-1β, TNF-α, and NF-kB gene expressions were examined
(Pugazhenthi et al., 2013). The GAPDH, housekeeping gene, was also checked for as a
control as it measures the production of ATP and pyruvate within the cells, which should
Extraction
The Evening primrose’s flower petals and leaf extracts were retrieved by using 20 mL
of 80% ethanol with 0.50 g of the leaf (EL), and 0.415 g for the flowers (EF), respectively.
Filtration of the samples was done using a DISMIC-25 0.22 μm Disposable Membrane Filter
Unit (ADVANTEC) and 20 mL Sterile Hypodermic Syringe (Korea Vaccine Co. The seed oil
sample (PO) was gathered from 500 mg Evening primrose oil capsules, using a 1 mL Sterile
Soil Preparation. In order to measure the survival tolerance of the Evening primrose
plant, a control and an experimental group was prepared for the soil. In the experimental
group, 18g soil, 1 mL diesel fuel, 0.2 g Urea, 0.2 g potassium phosphate monobasic, 0.175 g
copper chloride, 0.231 g iron oxide, and 30 mL DW were mixed and placed in a plastic cup.
Meanwhile, the control group contained 18 g of soil and 30 mL DW (See Figure 3).
Figure 2
Note. A. Preparation for flower, leaf, and oil of the Evening primrose. B. Extraction of the
Evening primrose with DW and 80% ethanol. C. Filtration through a 0.22μm disk filter.
7
Figure 3
Plant Growth in Soil. Two seeds were germinated on damp paper towels in an
enclosed capsule for 48 hours and were inserted below the surface level of the control soil.
These were grown for a week and watered once every 48 hours. Afterwards, a 1 cm layer of
war-polluted soil was placed on top of the control soil and sprout, and later carefully mixed to
see if the sprouted plants would be able to tolerate the conditions for 14 days.
Four agar plates were each divided into quarters and each section was labeled:
negative control (-), EF, EL, and PO. Using a micropipette, 100 μL of each bacterial culture,
S. flexneri, V. carchariae, E. coli, and B. subtilis, were dropped on the center of their
respective plates, and spread with a sterilized spreader. Afterwards, 16 paper discs, four for
each agar plate, were treated with either 20 μL DMSO, for the negative control, 40 μL EF
trials of which volume would carry the most of each treatment while also not overflowing.
Cells
The human monocyte cell line THP-1 was obtained from the Korean Cell Line Bank
(KCLB). The cells were cultured as recommended: in RPMI 1640 medium supplemented
8
with 10% Fetal Bovine Serum (FBS) and 1% penicillin-streptomycin. The cells were
incubated at 37 °C in a humidified atmosphere with 5 % CO2. The human lung cancer cell
line, A549 cells were purchased from KCLB and cultured in RPMI1640 in the same
1.5 × 106 THP-1 cells were seeded in each well of the six-well plate and differentiated
with 100 ng/ml phorbol-12-myristate 13-acetate (PMA, Sigma) and 2 mL of RPMI 1640 at
37°C in a humidified atmosphere with 5% CO2 for 48h for 3 days. After this time, the cells
were changed with fresh medium without PMA to allow cell recovery and were cultivated for
2 days under the same incubation conditions. Cell differentiation was verified by microscopy.
PMA-differentiated THP-1 cells and A549 cells were incubated with EF, EL and PO extracts
for 48h, then the cell viability was assessed by Trypan Blue dye exclusion assay.
Figure 4
Cell Cultivation
Note. A. cell cultivation on the bench. B. Observation using microscope. C. A549 cells. D.
THP-1 cells.
9
Primer sequencing
Three genes (IL-1β, TNF-α, NF-kB) associated with pro-inflammation were selected
to quantify their expression levels by THP-1 cells in response to the extracts of different
Evening primrose parts. Two genes (Bcl-2, Bax) associated with apoptosis were selected to
analyze if the treatment groups caused a change in the inducing or inhibiting of apoptosis.
Table 1
Gene Function
IL-1β
NK-kB
transduction pathway of inflammation (See Figure 5). The NF-kB biomarker gene is the
transcription factor for the pathway, meaning that the biomarker must be maintained for the
final target gene to be reached and a response to be produced. Of the responses, one explains
an increase in pro-inflammatory genes, which include IL-1β and TNF-α, meaning that if NF-
kB is maintained within the THP-1 cells, the target gene produces many responses, one of
10
which could be the expression of pro-inflammatory genes. This direct relationship between
the biomarkers in the signaling pathway made them even more critical in evaluating
inflammation.
Additionally, the significance of apoptosis biomarker genes Bax and Bcl-2 were
proven by the apoptosis signaling transduction pathway (See Figure 6). The signaling
pathway explains that one way apoptosis is induced is the decrease in NF-kB, but also, when
mitochondrial functions leads to the activation other protein kinases that ultimately induce
apoptosis.
Exon sequences of six genes (IL-1β, TNF-α, NF-kB, Bax, Bcl-2, GAPDH) were
utilized to construct respective primers of the genes. The designed primer sequences are
shown in Table 2.
Figure 5.
Figure 6.
Table 2
Total RNA extraction was performed on each sample using AccuPrep Universal RNA
Extraction Kit (Bioneer, K-3140) according to the manufacturer’s protocol (See Figure 7A).
RNJA samples were stored at -80 °C for further analysis. In order to proceed with cDNA
synthesis, five samples were designed: one negative, lipopolysaccharides (LPS) (100 ng/mL),
EF, EL, PO. The procedures was as indicated by the Prime Script ast strand cDNA Synthesis
kit (TAKARA, USA), creating a mix of 5 μL total RNA per sample, 1 μL 50μM oligo dT
primer, 2 μL 5X reaction buffer, 0.5 μL Reverse transcriptase, 1.5 μL RNase-free water, and
90 μL ddH2O. These five samples were then run at 12,000 rpm on the mini centrifuge to drop
all the solutions stuck on the sides of the tube, and then incubated at 42 ˚C for 1 hour.
RT-PCR
For the PCR process, cDNA of unexposed A549 cells, EF, PO, and EL exposed cell
groups were mixed, each with the Forward and Reverse of each primer, Bax, Bcl2 and
GAPDH. Also, cDNA of unexposed THP-1 cells, LPS, EF, PO, and EL exposed THP-1 cells
were mixed, each with IL-1β, TNF-α, NF-kB and GAPDH primers. Each mixture contained
2.7 μL cDNA and 1 μL of each primer, and 2 μL 10x PCR Buffer, 2 μL dNTP Mixture, 0.5
μL TaKaRa Taq, and 11.8 μL nuclease free water were added to run the PCR process as
noted in Table 3.
Table 3
PCR condition
94 ˚C 94 ˚C 60 ˚C 72 ˚C 72 ˚C
1 min 30 s 30 s 30 s 7 min
Gel electrophoresis
100 ml of 1X TAE buffer and 1.5g (1.5%) of Agarose LE master were mixed and
(BIONEER) was mixed with 1% agarose since the solution was originally 10,000x. The agar
solution was poured into the gel mold and left to harden, then put into the gel electrophoresis
machine and the gel was completely submerged in 1X TAE buffer. Then, 10 μL of 100bp
DNA ladder was added to each well of the gel, one for each of the groups of the PCR
products. Also, 6x DNA loading dye was mixed with the PCR product and loaded to the
remaining wells. Therefore, a total of 16 wells were used, 4 for the 100bp ladder and 12 for
the samples. After loading all the PCR products, electrophoresis was run at 100V for 25
minutes (See Figure 7B). 10 μL of PCR products was loaded into each well before running
related gene. The resulting visual of the gel electrophoresis process was retrieved through a
ChemiDoc (Accuris Smartdoc, Accuris, USA) to observe gene expression, and the relative
expressions in the photograph were quantified with the use of the ImageJ software.
Figure 7.
Note. RNAs of THP-1 cells and A549 cells treated with LPS and extract for Evening
primrose.
14
Results
After planting the germinated sprouts in the normal soil for 7 days, the first small
sprouts grow above the surface of the soil, proving that there was no issue with the setting of
the control soil (See Figure 8A-B). After 7 more days, there were a series of the sprouts,
proving that the plants were able to grow further from the 7-day mark. Similarly, even after
14 days of covering a full layer of war polluted soil over the plants, the plants continued to
grow, displaying that they did have some war-tolerant properties (See Figure 8C).
After 2 days of incubating the bacteria with the Evening primrose extract on the plate,
there seemed to be two signs of inhibition zones. Firstly, there was a moderately wide
inhibition zone around the PO treated disk when observing its effect on V. carchariae.
zone, leading to the possibility that the oil and flower extracts do influence inhibiting bacteria
Figure 8.
Figure 9.
Cell differentiation
presence of PMA, and viewed under an inverted light microscope at 100× to compare the
non-differentiated cells to the differentiated cells. When not treated by PMA, THP-1 cells are
round and non-adherent (See Figure 10A). Differentiation of THP-1 cells with PMA resulted
in a change in morphology, with cells changing dendrite-like cells and an adherent (See
Figure 10B). PMA-treated THP-1 cells were treated with LPS (100ng/ml), which is one of
the major components of the outer membrane of gram-negative bacteria. The cells treated
with LPS showed dendrites branched out in THP-1 cells (See Figure 10C).
Afterwards, the differentiated THP-1 cells were treated with the Evening primrose
extracts (EF. EL. PO), which resulted in a visible difference in cell density among the treated
Differentiated THP-1 cells and A549 cells were incubated with EF, EL and PO
extracts for 48h, then the cell viability was assessed by Trypan Blue dye exclusion assay
(data not shown). As a result, THP-1 cells and A549 cells treated with the Evening primrose
extracts were all alive, meaning that these extracts do not have cytotoxicity.
16
Figure 10.
Note. A. THP-cell, B. THP-1 cell treated with PMA for 48h. C-F. PMA-treated THP-1 cells
The expression of the Bcl-2 gene indicates that Evening primrose influenced anti-
apoptosis in A549 cells (See Figure 11A). More specifically, except for the positive control
LPS, the leaf, flower and oil treatments all had similar relative expressions of Bcl-2.
However, the detection of Bax gene expression in the Evening primrose extract-
treated cells indicates that Evening primrose influenced apoptosis in cells (Figure 11B).
Precisely, every treatment of the A549 cell led to an extremely low Bax relative expression,
but only in the flower treatment, the expression spiked to a value of 44.67. This evidence
bolstered the possibility that the flower extracts induce apoptosis as it was higher than any
Figure 11.
Relative expression graph of Bcl-2 and Bax genes in A549 cells treated with Evening
primrose extract.
Note. A. Bcl-2 expression, B. Bax expression, M. 100bp ladder, 1. LPS, 2. EF, 3. EL, 4. PO
After the PCR and gel electrophoresis analysis of the pro-inflammatory biomarkers in
the THP-1 cells, two primers signified changes (See Figure 12). First, there was a decrease in
IL-1β when treated with EL since the relative expression hit a low value of 0.04, proving that
expression value of 0.14, portraying that EF also had anti-inflammatory properties. On the
other hand, TNF-α relative expression was highest at a value of 1.00 in the no treatment
group.
18
Figure 12.
Finally, NF-kB relative expression did not experience any major suppressions, but the
lowest value was 0.57 due to oil treatment and highest at 1.54 as a result of positive control
treatment. Moreover, the two control groups, the positive LPS treatment of 1.54 and negative
no treatment group at 1.00 and had the two highest relative expressions, with the next highest
2023), a great concern is a possible local treatment to such large-scale disorders. Of such
candidates for local treatment is Evening primrose, which has commonly been used not only
This research was conducted to investigate 1) whether Evening primrose covered with
war contaminant soil can grow. 2) whether Evening primrose has anti-bacterial activities for
19
the waterborne disease related bacteria. 3) whether THP-1 cells, an immune cell line, treated
with Evening primrose extract are inhibited from releasing pro-inflammatory cytokines, such
as IL-1β, TNF-α, NF-kB. And 4) whether A549 cells, a lung cancer cell line, can change the
In brief, first, Evening primrose sprouts covered with contaminant soil were
examined, and it explained that the plants were able to grow after 14 days. Therefore, it could
be confirmed that Evening primrose could grow and survive even in harsh war-polluted
conditions.
In the research, the oil of Evening primrose especially decreased the growth in V.
carchariae, as represented by the Disk diffusion method, and the flower extract treatment
resulted in a moderate inhibition of S. flexneri growth. Therefore, it was found that Evening
primrose extracts directly affect the inhibition of water-borne infectious bacteria such as V.
carchariae and S. flexneri and has antibacterial activity by itself. Though previous research
published that Evening primrose has antibacterial activity on Salmonella typhimurium and
Staphylococcus aureus (Zhang et al., 2020), results of this research explain the specific parts
of Evening primrose that are related to different antibacterial activities and their effects on
In A549 cells, although Bcl-2 was overall consistently expressed except in the
positive control LPS where the relative expression dropped to 1.00, since it consists of a
relative expression to 44.67 as a result of flower treatment proved that the flower could
induce apoptosis. Such would mean that the flower extract could directly prevent harms done
by the pulmonary diseases via apoptosis. Additionally, in the apoptosis signaling pathway,
there are three primary paths: through the decrease in expression of NF-kB, through the
decrease in mitochondrial activity, and through cell cycle arrest. Since apoptosis is induced
20
but NF-kB was comparatively the most expressed in the flower treatment after the two control
groups with a relative expression of 0.93, the first path is likely not followed. Therefore, the
protein kinases that lead into the responses of the decrease in mitochondrial activity and the
inducing of cell cycle arrest will most likely see increased activity. Some of these protein
Also, THP-1 cells were differentiated into macrophage-like cells by treatment in the
morphology (Tedesco et al., 2018). When PMA-differentiated THP-1 cells are treated with
LPS, potent immunogen, macrophage-like THP-1 cells engulf pathogens to present to the
second immune cells, like neutrophils, and T cells (Ubanako et al., 2019). They release
inflammatory cytokines, IL-1β, TNF-α and NF-kB. However, the leaf extract treatment
showed the greatest decrease in IL-1β expression to a point of 0.04 relative expression value,
and the flower extract treatment showed the biggest decrease in TNF-α expression to 0.14
relative expression value, proving that the leaf and flower extracts had anti-inflammatory
transcription factor which carries onto the target gene and produces multiple responses.
Considering this property of the gene, NF-kB relative expression was also highest of the
evening primrose treatment groups in the flower treatment at a value of 0.93, meaning that
the flower group can both have high concentrations of the transcription factor but also
decrease the pro-inflammatory gene expression. Moreover, of the possible responses, one of
explained that IL-1β and TNF-α both decreased in expression due to evening primrose
treatment, other responses most likely experience increased activity, such as an increase in
chemokines, or adhesive molecules which are both agents that aid the cell signaling and
So far, the physiological activity of Evening primrose has been confirmed, but there
have been few studies confirming the anti-inflammatory response in lung cancer cells and
immune cells. This research, however, explains that the Evening primrose not only has anti-
inflammatory properties, but its extracts, particularly the flower and oil extracts, have war-
influenced disease preventive attributes as well. Furthermore, such characteristics of the plant
make it a strong candidate for easy-access but effective solutions to increasing and spreading
Acknowledgements
Firstly, I would like to express my appreciation for my parents Dr. Yoojin Kim and Mr.
Donghyon Kim for giving me the opportunity to conduct my studies as well as consistently
support my fields of interests and studies. I would like to express my sincere gratitude to the
private institute Genuine Research which enabled me to research within their laboratory daily
with their instruments and materials. Also, I want to acknowledge the assistance I received
from my mentor Dr. Min Hee Cho, who helped demonstrate the use of certain lab equipment
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