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Disease Diagnosis
Disease Diagnosis
DIAGNOSITICS
1
Introduction to
Molecular Diagnostics
2
Outline
3
Concept of Molecular Diagnostics
History of Molecular Diagnostics
Impact on Human Diseases
Basis for Molecular Assay
Management of the course
4
1. Molecular Diagnosis
5
1. Molecular Diagnostics
6
1. Molecular Diagnostics
9
1. Molecular Diagnostics: Goal
11
2. History of Molecular Diagnostics
The Molecular Biology Timeline
14
Discovery of DNA Structure
Rosalind E. Franklin
1920–1958
The structure of DNA was determined using X-ray
diffraction techniques. Much of the original X-ray
diffraction data was generated by Rosalind E. Franklin.
17
18
Discovery of DNA Structure
1955- 12 scientists
received Noble Prize
Kary Mullis
1985 41y
Invention of PCR
1993 49y
Received the Noble Prize
21
2. History of Molecular Diagnostics
The PCR Revolution
PCR has greatly facilitated and revolutionized
molecular diagnostics.
Its most powerful feature - large amount of
copies of the target sequence generated by its
exponential amplification, which allows the
identification of a known mutation within a
single day.
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2. History of Molecular Diagnostics
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2. History of Molecular Diagnostics
Human Genome Project
• U.S. Government project coordinated by the Dept. of
Energy and NIH
• Goals of the Human Genome Project
(1990–2006)
– To identify all of the genes in human DNA;
– To determine the sequences of the 3 billion bases
that make up human DNA;
– To create databases;
– To develop tools for data analysis; and
– To address the ethical, legal, and social issues
that arise from genome research
24
2. History of Molecular Diagnostics
Human Genome Project
• U.S. Government project coordinated by the Dept. of
Energy and NIH
• Goals of the Human Genome Project
(1990–2006)
– To identify all of the genes in human DNA;
– To determine the sequences of the 3 billion bases
that make up human DNA;
– To create databases;
– To develop tools for data analysis; and
– To address the ethical, legal, and social issues
that arise from genome research
25
Concept of Molecular Diagnostics
History of Molecular Diagnostics
Impact on Human Diseases
Basis for Molecular Assay
Management of the course
26
3. Impact on Human Diseases: Novelty
Diagnostic-Identity of a disease
Prognostic-Outcome of a disease
Predictive-Possibility of a disease
Therapeutic-Response of a
disease to treatment
29
3. Impact on Human Diseases
INFECTIOUS
DISEASE
HEMATOLOGY
Molecular
Pathology
SOLID
IDENTITY TUMORS
TESTING
GENETIC
DISEASE
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3. Impact on Human Diseases
Molecular Genetics
• Single gene disorders
病种多,特定家系中发病率高,对群体影响小,
遗传性基因携带者的筛查
• Polygenic disorders
病种少,特定家系中发病率高,对群体影响大
遗传易感性的检测
• Chromosomal disorders
31
3. Impact on Human Diseases
Molecular Oncology
• Diagnostic testing
• Disease prognosis
• Determination of predisposition
32
3. Impact on Human Diseases
Hematopathology
• Diagnostic testing
• Determination of clonality
Identity Testing
• Parentage
• Clinical testing
33
3. Impact on Human Diseases
Infectious Disease
• Qualitative and quantitative
detection of infectious agents
• Microbial identity testing
• Genotyping/drug resistance
testing
34
Concept of Molecular Diagnostics
History of Molecular Diagnostics
Impact on Human Diseases
Basis for Molecular Assay
Management of the course
35
4. Basis for Technology: Fundamental (1)
36
4. Basis for Technology: Platform
Molecular Technologies in the Clinical Laboratory
Amplification Techniques
PCR polymerase chain reaction多聚酶链反应
LCR ligase chain reaction 连接酶链反应
NASBA nucleic-acid sequence-based amplification
核酸序列依赖的扩增
DNA Sequencing
37
4. Basis for Technology: Platform
Molecular Technologies in the Clinical Laboratory
Hybridization Techniques
Southern hybridization Blot
Northern hybridization Blot
Electrophoretic Methods
SSCP (single-strand conformation polymorphism)
单链构象多态性
DGGE (denaturing gradient gel electrophoresis)
变性梯度凝胶电泳法
38
4. Basis for Technology: Platform
Molecular Technologies in the Clinical Laboratory
Biochip Technology
DNA micro-array
Protein micro-array
39
4. Basis for Technology: Target specialty
Nucleic acids are targeted by molecular assays
• Genetically-based diseases can be
diagnosed
• Specificity can be controlled
• Single base changes can be detected
• Expression of gene product is not
required
• Targets can be amplified >105
40
4. Basis for Molecular Assays: Diseases
Cause (etiology)
Mechanism (pathogenesis)
Diagnostic
• Distinguishing variants of human disease based
on presence of specific molecular markers
(chromosome translocations in Burkitt’s
lymphoma: c-myc)
42
4. Basis for Molecular Assay:
Pathogenesis (1)
Understanding molecular pathogenesis of human
disease enables effective utilization of molecular assays
Prognostic
• Prediction of likely patient outcomes based on
presence of specific molecular markers (gene
mutations predicting clinical course in cancer)
43
4. Basis for Molecular Assay:
Pathogenesis (2)
Understanding molecular pathogenesis of human
disease enables effective utilization of molecular assays
Therapeutic
• Prediction of response to specific therapies
based on presence of specific molecular
markers (gene mutations predicting poor
drug sensitivity in lung cancer: p53, k-ras)
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4. Basis for Molecular Assay: Molecular biology (1)
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4. Basis for Molecular Assay: Molecular biology (1)
46
4. Basis for Molecular Assay: Molecular biology (2)
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4. Basis for Molecular Assay: Molecular biology (4)
Beneficial outcomes from human genome project
• Improvements in medicine
• Microbial genome research
• DNA forensics/identity
• Improved agriculture and livestock
• Better understanding of evolution
and human migration
• More accurate risk assessment
48
4. Basis for Molecular Assay: Molecular biology (5)
Human genome project: Ethical, Legal, and
Social Implications
51
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