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Objective
• To collect the soil sediment samples from the coastal region of Chennai.
• To isolate the actinomycetes from the samples and perform morphological, physiological,
biochemical and molecular characterization.
• To produce and extract crude secondary metabolites from the isolated marine actinomycetes.
• To perform in vitro antimicrobial, antioxidant and cytotoxic assays.
• To purify and characterize the bioactive compound.
Introduction
Breast Cancer statistics
• Cancer is the leading cause of deaths worldwide in 2020.
• Of all the cancers, female breast cancer has the highest incidence of 11.7% and fifth leading
cause of cancer mortality of about 6.9% (685,000 deaths) globally.(WHO, 2021)
Actinomycetes
• The actinomycetes comes under phylum “Actinobacteria" and mostly Gram-positive bacteria.
• The colonies often grow as extensive mycelia, like a fungus.
• Actinomycetes strains are usually found in terrestrial soils, but have also been isolated from marine sediments and
marine sponges.
• Based on hyphal and reproductive structures, Actinomycetes are classified into 7 families namely
Streptomycetaceae, Nocardiaceae, Micromonosporaceae, Actinoplanaceae, Dermatophilaceae, Frankiaceae and
Actinomycetaceae.
Characterization Production
1. Morphological 3. Biochemical Production media
-Colour -Carbon utilization
-Shape -Nitrogen utilization Liquid-liquid extraction
- Spore (SEM) -Enzyme production
Ethyl acetate
4.Molecular
2. Physiological
Genomic DNA • Antioxidant assay (DPPH)
-Melanin
-Pigment • Antimicrobial activity
16s rRNA gene • Anticancer activity
-Organic
amplification
degradation
-NaCl Purification
Sequencing
• Column chromatography
• Characterization ( UV, FTIR, NMR,
NCBI Blast
MS)
Methodology
Sample collection and processing
• Soil samples were collected from 3 beaches located in Chennai such as Besant
nagar beach, Golden beach, Kovalam beach.
• The samples were collected from 5 locations.
BN sample
Control 10¯¹ A 10¯² A 10¯³ A 10¯⁴ A
(GB08)
10¯¹ B GB sample
(GB15)
Control 10¯¹ A 10¯² A 10¯³ A 10¯⁴ A
(KB10, KB11)
The selected 15 colonies were isolated and cultured into CSPY-ME and starch caesin
agar medium.
Primary cultures of selected
colonies
BN14 GB15
1.Morphological Characterization
Colour
determination
• The color of aerial mycelium and substrate mycelium of the actinomycetes were
observed in 4 different media namely M2, M3, M4 and M5 (Shirling et al, 1966).
Aerial
mycelium
Substrate
mycelium
BN01
Aerial
mycelium
Substrate
mycelium
BN12
7th day 14th day
M2 M3 M4 M5 M2 M3 M4 M5
Aerial
mycelium
Substrate
mycelium
BN13
Aerial
mycelium
Substrate
mycelium
BN14
Aerial
mycelium
Substrate
mycelium
GB15
Isolate Time Media Aerial Mycelium Substrate Mycelium Pigment Melanin
No.
M3 White White No No
M4 Greyish white Yellowish grey No No
M5 Yellowish orange Yellowish orange No No
Microscopic analysis
• The Starch casein agar medium poured onto petriplates.
• The five cultures BN01, BN12, BN13, BN14 and GB15 were streaked onto the
center of the Starch casein agar plate.
• The coverslip was inserted into the streaked plates at 45° angle and incubated for
7 days.
BN01
100X 400X 1000X
BN12
Aerial
Mycelium
Substrate
Mycelium
BN01 BN12
M6 M7 M6 M7
Aerial
Mycelium
Substrate
Mycelium
BN13 BN14
Aerial
Mycelium
Substrate
Mycelium
GB15
Isolate Media Aerial Mycelium Substrate Mycelium Melanin
No.
NaCl tolerance
• The NaCl tolerance of the actinomycetes was observed by varying the
concentrations of NaCl by 0, 2, 4, 6, 8 and 10% in Starch-Casein agar medium at
pH 7.2.
• The actinomycetes isolates were streaked onto the agar plates and incubated for
14 days at room temperature.
Production of secondary metabolites
• The 5 marine actinomycetes isolates were inoculated into the ISP-2 broth of each
50ml and incubated for 2 days at shaker incubator at room temparature.
• The spore formation was observed and 5 to 6ml of culture broth was inoculated
into the production media (Medium-14) of each 250 ml broth at pH 7.
• The production medias were incubated at shaker at room temparature for 1 week.
(Biji M, 2003)
Upper layer
Crude metabolites of marine actinomycetes
BNO1
BN12
Ethyl acetate Chloroform Methanol
BN13
BN14
GB15
DPPH Antioxidant assay
• A solution of 0.1mM of DPPH in methanol was prepared, 1 ml of DPPH solution mixed with 1
ml of extracts in methanol solution at different concentrations of 20-100 μg/mL. The positive
control is ascorbic acid.
• The reaction mixture was vortexed and left in dark for 30 mins at room temperature.
• The absorbance of the mixtures was measured by spectrophotometer at 517nm.
• Then % of inhibition was plotted against concentration, and from the graph IC50 was
calculated. The experiment was repeated two times at each concentration. (Rahman et al,
2015).
BN01
Chloroform Ethyl acetate Methanol
BN12
BN13
Chloroform Ethyl acetate Methanol
BN14
GB15
Standard
100.00 95.34 96.30 97.29
86.56
80.00
% of inhibition
60.00 51.57
40.00
20.00 9.05
0.00
5 10 15 20 25 30
Concentration (µg/mL)
% of inhibition
67.57
% of inhibition
% of inhibition
60 60 55.65 60 50.82
43.71
40 40 40
28.47
20 20 20 13.38
4.43 8.38
0.61 1.57 2.86
0 0 0
20 40 60 80 100 20 40 60 80 100 20 40 60 80 100
% of inhibition
62.51
60 60 57.71 60
44.59
40 40 40
21.77 23.30 24.63 25.85
20.64 20
20 20
0 0 0
20 40 60 80 100 10 20 30 40 50 60 20 40 60 80 100
80 80 80
% of inhibition
% of inhibition
% of inhibition
59.4865
60 60 60
47.39 47.3145
39.70 39.29
40 40 32.85 40
25.74 26.763
20 18.63 20 12.397
7.69 20
2.74 4.46 4.80 6.73
0 0 0
20 40 60 80 100 20 40 60 80 100 20 40 60 80 100
Concentration (µg/mL) Concentration (µg/mL) Concentration (µg/mL)
% of inhibition
% oh inhibition
60 52.56 60 55.82 58.22
60
40.763 44.6095 49.26
40 40
28.6765 40 29.87
18.37 20.76 21.78
20 11.495 20 14.76 19.08
9.84 20
0 0
20 40 60 80 100 20 40 60 80 100 0
20 40 60 80 100
Concentration (µg/mL) Concentration (µg/mL) Concentration (µg/mL)
% of inhibition
60 63.5465
60 60
40 40 40 31.171
29.009
20 10.668 12.132 13.56 14.5225 20 20
4.8705
0 0 0
20 40 60 80 100 20 40 60 80 100 20 40 60 80 100
Concentration (µg/mL) Concentration (µg/mL) Concentration (µg/mL)
Samples IC 50 (µg/mL) STDEV
BNO1
Chloroform 596.91 16.17
Ethyl acetate 35.94 0.25
Methanol 59.03 0.24
BN12
Chloroform 193.41 0.97
Ethyl acetate 8.66 0.03
Methanol 22.43 0.16
BN13
Chloroform 650.54 16.93
Ethyl acetate 105.52 0.52
Methanol 84.54 0.37
BN14
Chloroform 95.13 0.51
Ethyl acetate 229.58 1.79
Methanol 60.9 0.35
GB15
Chloroform 344.39 7.96
Ethyl acetate 27.78 0.16
Methanol 31.47 0.15
660 650.54
596.91
560
460
IC50 (µg/mL)
360 344.39
260
229.58
193.41
160
105.52
95.13
84.54
59.03 60.9
60 35.94
22.43 27.78 31.47
8.66
01-EA 01-MET 01-CHL 12-EA 12-MET 12-CHL 13-EA 13-MET 13-CHL 14-EA 14-MET 14-CHL 15-EA 15-MET 15-CHL
-40
4 5 2 5 2 4 5 2 4 5 2
4 5 2 4
BN01
3 3 3 3 3
1 1 1 1 1
4 2 5 2 5 2
4 5 2 5 4
BN12 5 2 4
3 3 3 3
3
ML PA SA EC CA
1 1 1 1 1
4 5 2 4 5 2 2 4 5 2
4 5 5 2
BN13 4
3 3
3 3 3
1 1 1 1 1
4 5 2 5 2 2
5 2 4 4 5 5
BN14 4 2 4
3 3 3 3 3
1 1 1 1 1
GB15 4 5 2 4 2 5 2 4 5 2 4 5 2
4
3 3 3 3 3
ML PA SA EC CA
Samples (mm) (mm) (mm) (mm) (mm)
BN01
1 0 12 11 13 12
2 18 14 15 16 0
3 10 0 18 17 0
4 0 0 0 0 0
5 33 16 37 30 40
BN12
1 10 13 0 0 14
2 10 12 15 0 11
3 0 13 0 0 10
4 0 0 0 0 0
5 32 17 33 29 39
BN13
1 11 11 0 0 14
2 14 14 15 12 0
3 15 12 0 0 0
4 0 0 0 0 0
5 31 17 32 28 38
BN14
1 12 10 0 10 14
2 14 14 15 20 13
3 0 0 14 16 14
4 0 0 0 0 12
5 28 21 33 35 37
GB15
1 0 13 13 0 13
2 13 12 27 17 0
3 0 11 0 0 14
4 0 0 0 0 0
5 27 24 33 32 40
Purification
• Since, the crude extract of BN12 has highest anti-oxidant activity, it has been
taken for purification and characterization.
Hexane : Ethyl
acetate
• The light microscopic analysis showed the shape of mycelium and determination
of spores.
BN01- Spira with branched substrate mycelium
BN12- Rectus. Branched aerial mycelium with short chain spores (3-10). Dense
and branched substrate mycelium with no spores.
BN13- Retinaculum Apertum with branched aerial and substrate mycelium.
Oval shaped short chains of spores.
BN14- Retinaculum Apertum with long chain spores (more than 10). Branched
aerial mycelium and dense substrate mycelium.
GB15- Rectus, branched aerial mycelium with short-chain oval shaped spores
(3-10 spores), dense and unbranched substrate mycelium
• It also showed that all the 5 cultures have not produced melanin pigment.
• The antioxidant assays of 15 crude extracts shows that EA & MET extracts of
isolates BN01, BN12 and BN15 and methanol extract of BN14 have increased
radical scavenging activity. In that, the EA extract of BN12 showed highest
radical scavenging activity of 97.75% at the concentration of 60 µg/mL and has
the half maximal inhibitory concentration (IC50) of 8.66 µg/mL.
• The results of antimicrobial assay showed that the ethyl acetate extract of the
isolate GB15 exhibited a maximum zone of inhibition of 27 mm against S.
aureus and the isolate BN14 showed 20 mm of the zone of inhibition against E.
coli. The isolate BN01 showed a maximum zone of inhibition (18 mm) against
M. luteus. The pathogens P. aeruginosa and C. albicans were moderately
inhibited by all the marine actinomycetes isolates with the average zone of
inhibition of 13 – 14 mm.
Future works
Characterization
1. Biochemical- Carbon and nitrogen utilization, enzyme production
2. Molecular characterization- Sequencing and phylogenetic analysis
Production
• Bioactive Compound purification- TLC, Column Chromatography
• Characterization- UV, FT-IR, NMR
References
• Breast Cancer: Types of Treatment | Cancer.Net
• Seca AML, Pinto DCGA. Plant Secondary Metabolites as Anticancer Agents: Successes in
Clinical Trials and Therapeutic Application. Int J Mol Sci. 2018;19(1):263. Published 2018
Jan 16. doi:10.3390/ijms19010263
• Noura El-Ahmady El-Naggar , 2015. Isolation, Screening and Identification of Actinobacteria
with Uricase Activity: Statistical Optimization of Fermentation Conditions for Improved
Production of Uricase by Streptomyces rochei NEAE-25. International Journal of
Pharmacology, 11: 644-658.
• Dholakiya RN, Kumar R, Mishra A, Mody KH and Jha B (2017) Antibacterial and
Antioxidant Activities of Novel Actinobacteria Strain Isolated from Gulf of Khambhat,
Gujarat. Front. Microbiol. 8:2420. doi: 10.3389/fmicb.2017.02420
• Waks AG, Winer EP. Breast Cancer Treatment: A Review. JAMA. 2019 Jan 22;321(3):288-
300. doi: 10.1001/jama.2018.19323. PMID: 30667505.
• Biji, M.. “Marine Actinomycetes as source of antimicrobial compounds and as probiotics and
single cell protein for application in Penaeid Prawn Culture Systems.” (2003).
• Shirling, Elwood B. and David Gottlieb. “Methods for characterization of Streptomyces
species.” International Journal of Systematic and Evolutionary Microbiology 16 (1966): 313-
340.
• Rahman, M.M., Islam, M.B., Biswas, M. et al. In vitro antioxidant and free
radical scavenging activity of different parts of Tabebuia pallida growing in
Bangladesh. BMC Res Notes 8, 621 (2015). https://
doi.org/10.1186/s13104-015-1618-6
• Vijayakumar, Ramasamy. (2015). Actinomycetes are also known as greatest
source of antibiotics.
THANK YOU
Review of Literature
• Adrienne G et al., 2019
Breast cancer is most common type of cancer among women and it is treated by
means of surgery, radiation therapy, hormone therapy and by medications. The
main limitation of using medication is the side-effects caused during treatment.
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