Scribd Logo
Upload

Welcome to Scribd!

  • Ch8 Predictive Methods Using Protein Sequences

    Uploaded by

    mirabilis_annee
    132 views18 pages
    This document summarizes predictive methods for analyzing protein sequences, including predicting secondary structure, solvent accessibility, transmembrane segments, and subcellular localization. It lists specific tools such as PHDsec, PROFsec, and PSIPRED that can be used for secondary structure prediction, and tools like PHDacc, PROFacc, and Jpred for solvent accessibility prediction. TopPred and TMHMM are mentioned as options for predicting transmembrane segments, and PSORT and TargetP for subcellular localization prediction.

    Original Description:

    Copyright

    © Attribution Non-Commercial (BY-NC)

    Available Formats

    PPT, PDF, TXT or read online from Scribd

    Did you find this document useful?

    Is this content inappropriate?

    Report this Document
    This document summarizes predictive methods for analyzing protein sequences, including predicting secondary structure, solvent accessibility, transmembrane segments, and subcellular localization. It lists specific tools such as PHDsec, PROFsec, and PSIPRED that can be used for secondary structure prediction, and tools like PHDacc, PROFacc, and Jpred for solvent accessibility prediction. TopPred and TMHMM are mentioned as options for predicting transmembrane segments, and PSORT and TargetP for subcellular localization prediction.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PPT, PDF, TXT or read online from Scribd
    Flag for inappropriate content
    132 views18 pages

    Ch8 Predictive Methods Using Protein Sequences

    Uploaded by

    mirabilis_annee
    This document summarizes predictive methods for analyzing protein sequences, including predicting secondary structure, solvent accessibility, transmembrane segments, and subcellular localization. It lists specific tools such as PHDsec, PROFsec, and PSIPRED that can be used for secondary structure prediction, and tools like PHDacc, PROFacc, and Jpred for solvent accessibility prediction. TopPred and TMHMM are mentioned as options for predicting transmembrane segments, and PSORT and TargetP for subcellular localization prediction.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PPT, PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 18

    Predictive Methods Using

    Protein Sequences
    • Secondary Structure Prediction
    • Solvent Accessibility
    • Transmembrane Segments
    • Subcellular Localization
    Secondary Structure Prediction
    • PHDsec (http://www.predictprotein.org/ )
    • PROFsec (http://cubic.bioc.columbia.edu/predictprotei
    n/ )
    • PSIPRED (
    http://bioinf.cs.ucl.ac.uk/psipred/ )
    Solvent Accessibility
    • PHDacc (http://www.predictprotein.org/ )
    • PROFacc (http://cubic.bioc.columbia.edu/predictprotei
    n/ )
    • Jpred (http://www.compbio.dundee.ac.uk/~
    www-jpred/ )
    Transmembrane Segments
    outside

    inside
    • TopPred (http://bioweb.pasteur.fr/seqanal/in
    terfaces/toppred.html )
    • TMHMM
    (http://www.cbs.dtu.dk/services/TMHMM/
    )
    Subcellular Localization
    • PSORT (http://psort.ims.u-tokyo.ac.jp/ )
    • TargetP (http://www.cbs.dtu.dk/services/Ta
    rgetP/ )

    You might also like