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OCEANOGRAPHY
doi: 10.1002/lno.10004
Abstract
Dissolved CO2 dynamics associated with flooding and postflood recovery were investigated in the lower
estuary of the Richmond River and a tributary draining an acidic wetland. Heavy rains (up to 133 mm d21)
resulted in large discharge volumes (up to 250 3 106 m3 d21) flushing the estuary in less than a day. Maximum values of the partial pressure of CO2 (PCO2 , 2006 Pa or 19,801 latm) occurred during the postflood
recovery period. High PCO2 values were related to the transport of floodplain metabolic products via surface
runoff and groundwater as well as the low pH (4.22) of waters draining a modified wetland with coastal acid
sulphate soils. Aerobic respiration alone could not explain the high concentrations of CO2 in the estuary and
an area of low buffering developed in the 020 salinity range. PCO2 was correlated with freshwater discharge
in the Richmond River main channel (R2 5 0.82; p < 0.05; n 5 9) but not in the acidified tributary (R2 5
0.17; p > 0.05; n 5 7). Air-water fluxes of CO2 were at the high end of the range for aquatic systems (maximum 1413 mmol C m22 d21, mean 252 mmol C m22 d21). This study highlights the large spatiotemporal
variability of PCO2 , the importance of episodic flooding events, the role of adjacent modified acidic wetlands,
and the role of groundwater discharge as a source of CO2 to estuaries. Global estimates of CO2 air-water
fluxes in estuaries may be under estimated due to the lack of high-resolution data to capture short-term
episodic events (e.g., flooding), in tropical and subtropical areas.
*Correspondence: Sergio.ruiz-halpern@scu.edu.au
Ruiz-Halpern et al.
Fig. 1. Map of the Richmond River detailing the starting point of the
surveys in Ballina and the ending point in the Tuckean Swamp. The
shaded grey area represents the extent of Coastal Acid Sulphate Soils
(CASS) in the Tuckean Swamp. The arrows mark the site of the gauges
where discharge was measured.
Methods
A series of surveys were conducted in the lower Richmond
River Estuary, New South Wales, Australia (Fig. 1). The Richmond River is a wave dominated barrier estuary located in
eastern Australias subtropical band, with a water area of
19 km2 and a catchment area of 6850 km2 (McKee et al.
2000). As a result of intense rain periods during the summer
(1800 mm average annual rainfall, 65% concentrated from
December to April) the estuary receives highly variable
catchment flows (Eyre and Pont 2003). This estuary is highly
modified with levee constructions, drainage networks, floodgates, and canals, as well as land clearing. The drainage
works in the flood plain wetlands, have lowered the groundwater table. As a result, the pyritic clays present in protected
estuarine embayments, and behind barrier systems formed
during the formation of the Richmond River floodplain in
the Holocene, have developed into CASS, which can deliver
very acidic water (pH < 4) after rain events (Sammut et al.
1996). These low pH waters can be found year round and are
primarily associated with groundwater inputs (de Weys et al.
2011).
2
Ruiz-Halpern et al.
Fig. 2. Freshwater discharge (left axis) in the Richmond River, inverse of residence time (right axis), and rainfall (insert) during the study period. The
vertical lines mark the nine times that the samplings took place.
(1)
Ruiz-Halpern et al.
velocity and TSS, our evasion rates should be seen as minimum estimates.
Excess CO2, defined as free dissolved CO2 in excess of
atmospheric equilibrium was calculated following Zhai et al.
2005:
CO2
Excess CO2 5 CO2 2 KH
3 PCO2 air
Fig. 3. Surface salinity along the track of the surveys showing four
broad hydrological stages defined: Flood (four days), postflood (days 8
69), dry with minor rains (69145), dry (day 245).
(2)
(4)
Results
The data collected over the five month period showed a
high degree of variability. The sampling started four days
after a major rain event (133 mm d21 on 26 January 2012,
Fig. 2), with previous rains providing wet antecedent conditions that triggered a large discharge of surface water (250 3
106 m3 d21, Fig. 2). Freshwater discharge closely followed
the rainfall pattern. Four days after the large rain (30 January
2012), the estuary remained fresh to the mouth (Fig. 2), with
a residence time of only 0.34 d. The maximum discharge
rate for the Tuckean swamp (9.9 3 106 m3 d21) was 25-fold
times lower than in the Richmond River Estuary but with
similar flushing times (Fig. 2).
Brackish water started traveling upstream one week postflood and reached 25 km (mouth of the Tuckean Swamp) 69
d later (Fig. 3). Our observations were separated into the
main river channel (Richmond River Estuary) and Tuckean
Swamp (Table 1). The Tuckean Swamp experienced the
(3)
Ruiz-Halpern et al.
Table 1. Mean and ranges for water quality (temperature, salinity, pH, and DO) in the Richmond River Estuary and Tuckean
Swamp during each survey. nd 5 no data
Temperature ( C)
Days postflood (d)
Salinity
DO ( lmol kg21)
pH (NBS)
Mean
Range
Mean
Range
Mean
Range
Mean
Range
4
8
23.77
25.22
23.5124.28
23.5725.68
0.05
0.99
0.040.08
0.0515.29
6.44
6.42
6.246.59
5.917.25
128.3
57.9
100.6146.7
24.4201.8
18
25.77
24.8527.1
2.42
0.0510.04
7.22
6.877.66
96.1
79.7124.5
29
36
24.52
25.76
23.1325.63
2427.135
11.74
3.99
0.0533.28
0.0712.46
7.66
7.09
6.948.07
6.197.65
170.5
190.9
107.4233.3
160.9200
69
24.67
24.0825.15
17.44
1.1933.79
7.78
7.058.13
246
219.6268
119
145
20.18
16.57
18.8422.16
15.4720.02
13.4
7.06
0.5536.3
0.0638.25
7.72
6.84
7.288.03
6.238.03
252.9
225.9
226.9287.8
218.7239.7
245
21.84
19.3623.63
23.43
6.635.4
7.73
7.37.95
246.5
223.6261.3
Tuckean Swamp
4
24.82
23.9325.06
0.03
0.0010.04
5.02
4.586.37
65.1
46.0126.9
25.59
25.3425.78
0.04
0.040.05
5.66
5.466.3
10
2.252.2
18
29
26.45
24.14
25.8427.5
23.5124.76
0.05
0.08
0.040.06
0.050.11
6.82
6.4
6.607.07
5.816.93
77.1
37.3
11.998
1.9109.6
36
27.95
27.1828.08
0.09
0.080.09
5.7
5.356.19
148.1
136.4159.7
69
119
24.38
17.56
23.6025.3
16.0218.99
0.31
0.22
0.081.14
0.020.7
5.81
6.18
4.227.37
4.897.4
204.1
207.8
191.6219.6
171.8245.6
145
14.51
14.115.77
0.05
0.050.07
5.34
5.136.38
210.3
199.5230.1
245
nd
Richmond River
nd
222
nd
nd
Rn, PCO2 , [CO2], TA, DIC, and %CO2 in the DIC pool, for the Richmond River Estuary during each
survey
222
Rn
(Bq m23)
PCO2
(Pa)
[CO2]
( lmol kg21)
TA
( lmol kg21)
DIC
( lmol kg21)
%CO2
Days
postflood (d) Mean Range
Mean Range
Mean Range
Richmond
4
55.9
40.270.4
601.5
509879
208.3
298.8 218.5392.4
507.1 449.5695.8
41.2
50.2
22.169.6
873.4
2041196
290
66.4394.7
468.8
1481542
758.2
4291703
42.4
7.469.4
18
29
47.1
40.5
5.675.9
2.859.7
681.8
281.3
128951
38647
221.7
93.3
41.1302.4 2002.2
11.6219.1 2093
10532718
6183787
2213
2133.2
13102920
6123899
18.6
3.9
3.119.8
0.817.7
36
11.5
0.633.3
275.1
52480
88.8
16.9157.2
117984
709.6
2511137
14.5
3.353.3
69
119
13.1
23.6
1.320.8
5.629.7
135.2
60.9
44.7584.7
38112
43.6
22.5
13.2197.1 1677.9
11.742.7
847.8
7092252
3281525
1623.5
826.8
8212079
3421364
2.9
3.7
0.713.9
0.99.2
145
37.1
20.180.0
242.6
41399
103.4
13.3175.4
394.5
1051652
486.1
2221489
28.5
0.956.7
245
14.3
3.319.9
94.9
41232
31.3
13.678.7
1313.9
8841524
1277.3
9481441
2.5
1.17.5
Mean Range
177.8303.5
625.4
Mean Range
Mean Range
32.952.1
Ruiz-Halpern et al.
222
Rn, PCO2 , [CO2 ], TA, DIC, and % CO2 in the DIC pool, for the Tuckean Swamp during each sur-
vey. nd 5 no data
222
Rn
(Bq m23)
PCO2
(Pa)
[CO2]
( lmol kg- 2 1)
TA
( lmol kg21)
DIC
( lmol kg21)
%CO2
Days
postflood (d) Mean Range
Mean
Tuckean Swamp
4
39.8
22.859.8
1422.9 6201581
478.6
213.5531.7
33
0265
525.4
422544
86.1
40.7
37.844.6
1757.5 8651891
579.4
284.8622.2
165.7
92459
747.3
569972
78.3
48.086.5
18
29
59.6
81.6
48.381.9
1148.5 7521873
53.2126.5 1183.6 6481863
368.8
407.5
18.6
43.9
13.531.3
18.174.8
36
59.5
377.6
131.3619.8
90.9
53.888.8
69
119
32
60.3
19.863.7
33.9117.9
nd
345.6
95618
nd
145.8
37.6268.8
nd
177.7
145
97.2
60.2134.6
545.5 536692
249.5
155.2317.8
25
245
nd
nd
Range
Mean Range
nd
Mean
Range
Mean
65130
Mean Range
44.796.9
227698
14.5
0515
nd
326
215557
nd
48.9
7.595.9
8166
279.1
174340
89.5
48.394.7
nd
471.2
Range
nd
nd
Fig. 4. Salinty relationships with PCO2 , 222Rn, O2 pH, TA, and DIC.
most downstream river section of the Richmond River Estuary (Tables 2, 3; Fig. 4). The highest PCO2 value measured in
the Richmond River Estuary was 1196 Pa seven days after
the flood. The minimum value was slightly lower than
equilibrium (38 Pa 119 d after the flood, atmosphere 5 40
Pa; Table 1). The maximum value in the Tuckean Swamp
was 2006.2 Pa 36 d after the flood and the minimum value
95 Pa 119 d after the flood, the overall mean for the swamp
was 1171.7 Pa, a value 2.7-fold higher than the mean PCO2
in the river section (439.5 Pa) (from Tables 2, 3).
In general, there was an increase in PCO2 and 222Rn during
the postflood recovery of the estuary from flood conditions,
Ruiz-Halpern et al.
Fig. 5. Estuarine PCO2 distribution along the surveys. Data for 29 d at the mouth and 68 and 245 d in the Tuckean Swamp are missing due to equipment failure.
222
Ruiz-Halpern et al.
Fig. 6. Scatterplots of excess CO2 vs. AOU in the Richmond River and
Tuckean swamp sections. All relationships are statistically significant (p <
0.05). R2 values and slopes of best fit are summarized in Table 4.
estuary of 10.11 3 106 mol d21 for the area surveyed seven
days after the flood. The highest export of dissolved CO2
into the estuary occurred during flooding with 19.75 3 106
mol d21 (5.5 times higher than atmospheric evasion). The
Tuckean Swamp is 11.3% of the area covered by the Richmond section; however, the flux of CO2 to the atmosphere
ranges from 18% to 265% of the lower Richmond River Estuary flux depending on the hydrological stage, but the export
of dissolved CO2 to the estuary was always lower than from
the river (Table 5). The mean overall flux to the atmosphere
during the study was 252 mmol m22 d21 (Table 6, calculated
from Table 5) and is among the highest average flux measured in worldwide estuaries (Table 6).
To test whether hydrology controlled PCO2 in the Richmond River Estuary, we tested relationships between freshwater discharge and mean PCO2 . We tested 1, 7, 14, and 30 d
cumulative freshwater discharge but only 14 d cumulative
discharge was found to have a significant relationship on
mean PCO2 in the Richmond River Estuary (R2 5 0.82, p <
0.05, n 5 9) but not in the Tuckean Swamp (R2 5 0.17, p >
0.05, n 5 7) (Fig. 10). The relationship found in the Richmond River Estuary was used to model PCO2 over the course
of the year (Fig. 10).
Fig. 7. Ratio of PCO2 at in situ temperature and salinity and PCO2 calculated at the temperature and salinity of the stating point of the survey
(most downstream point).
Discussion
In spite of small regular rainfall events occurring in mid
March, the end of May, and mid June, affecting the estuary
recovery, surface salinity in the Richmond River Estuary
(Fig. 2) reflected the four broad hydrological stages, and
associated distinct biogeochemistry, typical of subtropical
estuaries (Eyre and Twigg 1997; Eyre and Ferguson 2006):
Flood stages
1. The flood stage lasted at least four days after the large rain
event (run 1, 30 January 2012) during which the estuary
remains flushed to the mouth. During this stage, the
residence time of the water in the estuary is shorter than
8
Ruiz-Halpern et al.
Table 4. Correlation coefficients and slopes of key parameters during each survey in the Richmond River Estuary and Tuckean
Swamp (from Figs. 6, 8). Statistically significant correlations (p < 0.05) are shown in bold
Excess CO2 vs.
AOU
Days
postflood (d)
222
R2
Slope
Richmond
Tuckean
0.62
0.91
1.99
3.93
0.1
0.7
Richmond
0.91
1.68
0.59
10.11
18
Tuckean
Richmond
0.77
0.75
4.01
3.54
0.45
0.2
51.5
5.83
29
R2
Rn vs. PCO2
Slope
2.4
213.5
222
Rn vs. O2
222
Rn vs. pH
R2
Slope
R2
Slope
0.18
0.53
20.5
1.16
0.15
0.73
20.004
0.031
0.51
1.68
0.41
20.019
0.44
0.21
23.7
20.39
0.23
0.3
20.053
20.006
Tuckean
0.88
2.54
0.85
17.28
0.98
22.13
0.81
20.008
Richmond
Tuckean
0.91
0.8
1.21
2.96
0.7
0.83
10.17
14.7
0.76
0.51
21.86
21.08
0.42
0.92
20.007
20.013
36
Richmond
0.78
4.26
0.84
10.13
0.49
20.38
0.74
20.024
69
Tuckean
Richmond
0.75
0.81
3.3
1.21
0.89
0.28
18.97
9.09
0.97
0.54
21.97
21.53
0.83
0.4
20.009
20.031
Tuckean
119
Richmond
Tuckean
nd
nd
nd
0.74
0.97
0.35
2.42
0.21
0.92
nd
0.67
20.46
0.71
20.069
1.59
5.23
0.33
0.8
21.29
20.77
0.26
0.9
20.02
20.027
145
Richmond
0.79
2.05
0.51
7.5
0.11
20.14
0.59
20.035
245
Tuckean
Richmond
0.67
0.96
4.57
0.88
0.65
0.21
3.49
5.01
0.15
0.25
20.14
21.04
0.37
0.22
20.009
20.018
Tuckean
All
nd
nd
nd
nd
0.83
1.48
0.44
10.9
nd
nd
0.4
21.8
nd
0.43
nd
20.02
Drivers of CO2
A number of biogeochemical processes may be associated
with surface water PCO2 in the estuary. A close exploration of
the drivers of CO2 dynamics allows for the identification of several underlying mechanisms that contribute to PCO2 in the
lower Richmond River Estuary and Tuckean Swamp that vary in
intensity depending on the hydrologic regime of the estuary.
Ecosystem metabolism
Heterotrophic metabolism appears to be an important
source of CO2 in the estuary, but the relative contribution
9
Ruiz-Halpern et al.
222
Rn vs. pHNBS, O2, and PCO2 in the Richmond
Riverand Tuckean Swamp sections. R2 values and slopes are summarized
in Table 4.
Fig. 8. Scatterplots of
Ruiz-Halpern et al.
Table 5. Average daily CO2 fluxes for each survey for the Tuckean Swamp and Richmond River Estuary. Air-water flux and area
computed as % flux of the Tuckean Swamp and Richmond River Estuary. Estuary flux % of CO2 (moles 3 106 d21) evaded to the
atmosphere compared to CO2 transported by the water from upstream of the Richmond River Estuary or from the Tuckean Swamp
into the lower Richmond River. nd 5 no data. The total area surveyed is 15.4 km2, with the Richmond River having13.8 km2, and
the Tuckean Swamp 1.6 km2, 11.3% of the total area
Days
postflood
4
Section
Richmond
Tuckean
Whole estuary
19
29
Richmond
Tuckean
69
119
U10
(m s21)
200
507.6
2.76
0.79
28.8
2.23
Estuary flux
(mol 3 106 d21)
Estuary %
flux (%)
19.4
0.35
12.5
69.3
231.4
3.55
19.75
15.2
576.4
1379.6
7.95
2.16
4.17
2.53
0.21
75.9
91.1
27.2
658.2
10.11
2.73
78.7
363.6
564.3
5.02
0.88
3.62
1.54
0.22
76.5
80.0
Whole estuary
384
5.89
1.76
77
nd
1413.5
nd
2.21
5.56
0.72
0.13
nd
94.5
Richmond
Tuckean
17.6
nd
nd
nd
0.84
nd
Richmond
Tuckean
138.8
641.8
1.91
1.01
4.21
0.33
0.06
85.3
94.4
Whole estuary
190
2.92
0.39
88.2
90.8
nd
52.5
Richmond
Tuckean
81.2
nd
1.09
nd
5.56
0.11
nd
Whole estuary
nd
nd
nd
nd
15.2
354.9
0.21
0.55
3.89
0.013
0.02
94.2
96.5
49.8
0.76
0.033
95.8
440.9
1319.5
6.09
2.06
6.67
0.26
0.2
95.9
91.2
Richmond
Tuckean
Richmond
Tuckean
Whole estuary
245
% Flux
(%)
Whole estuary
Whole estuary
145
Air-water flux
(mol 3 106 d21)
Richmond
Tuckean
Whole estuary
36
Air-water flux
(mmol m2 d21)
nd
265.2
33.9
530.4
8.15
0.46
94.7
Richmond
Tuckean
33.4
nd
0.46
nd
0.0027
nd
99.4
nd
Whole estuary
nd
nd
nd
nd
nd
once the salinity is below the MBZ salinity, there are very
low levels of CO23 2 , so further additions of DIC lead to an
increase of CO2 (Hu and Cai 2013). In the Richmond River
Estuary, the MBZ was located in the 315 salinity region,
similar to the Mississippi river (Hu and Cai 2013). Hence,
high reductions in PCO2 occur in this area. However, during
the flood stage, when the estuary is flushed fresh several
times a day, all the material is exported directly into the
coastal shelf as there was no mixing in the estuarine basin.
Groundwater inputs
Although the relative contribution of CASS groundwater
inputs is only approximately 6% in the Tuckean Swamp
(Santos and Eyre 2011), groundwater can be highly enriched
in inorganic carbon relative to fresh surface waters in the
region (Atkins et al. 2013). A groundwater survey upstream
from the Tuckean Swamp (authors unpubl. data) showed
11
Ruiz-Halpern et al.
Estuary
Type
PCO2 range
Flux
(Pa)
(mmol m-2 d21)
Randers fjord
Temperate
22.3348.5
Elbe
Temperate
58.8111.5
145
Ems
Rhine
Temperate
Temperate
56.8380.5
55.2201.6
184.4
108.7
Thames
Temperate
51.2526.9
201.6
Scheldt
Tamar
Temperate
Temperate
12.7955
38.5223
172.6
204.9
Loire
Temperate
63.8294.9
176.4
Grionde
Douro
Temperate
Temperate
4652860
134.8222.9
84.4
208.2
Sado
Temperate
58.3577.6
85.7
York River
Satilla River
Temperate
Temperate
35.5192.5
36.5830.9
17
116.4
Tropical
8.1154
13.9
Hooghly
Godavari
Godavari
Tropical(premonsoon) 22.350.7
Tropical(monsoon)
293447.7
(m3 3 106 d21). Closed circles correspond to the Richmond River (PCO2
5 0.74 6 0.19 3 discharge 1 142 6 83.8, R2 5 0.68, p 5 0.0063, n 5
9); open circles correspond to the Tuckean Swamp (relationship not significant). (B) Modeled PCO2 from equations derived in (A). Dashed line
represents the upper and lower bounds of the estimates. The crosses
represent the mean PCO2 for the Richmond River and Tuckean Swamp
sections measured during the surveys.
15
240
MandoviZuari
Tropical
50.7354.6
38.9
Hastings River
Camden Haven
Warm temperate
Warm temperate
21.3184.7
1969.2
20.4
21.8
Wallis Lake
Warm temperate
16.855
22
Subtropical
382006.2
252.1
Richmond River*
Fig. 10. (A) mean PCO2 (Pa) vs. 14d cumulative freshwater discharge
Ruiz-Halpern et al.
tion of OM released as CO2. The relative magnitude attributable to each of these mechanisms is currently uncertain and
further investigations are required to unravel the long-term
effects of flooding on the global carbon cycle.
This study highlights several key points that may have
implications for our understanding of CO2 fluxes in estuaries
worldwide. (1) The importance of hotspots and hot
moments in annual estimates of CO2 fluxes, recognizing
the necessity of capturing short-term phenomena, which
requires high resolution spatio-temporal surveys, (2) the
poor representation of (sub) tropical estuaries subject to distinct and/or modified wetland and hydrological conditions
in current estimates of global CO2 emissions from estuaries,
and (3) the lack of data in most areas of the southern hemisphere especially Australia, where the hydrological regime,
groundwater inputs, and large areas of modified wetlands
with CASS in many of the catchments may have implications for global carbon budgets, but are poorly quantified.
Current estimates usually overlook these hotspots and hot
moments of CO2 evasion. Adequate coverage of representative estuaries worldwide is important if we want to better
constrain the global carbon budget.
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Benson, B. B., and D. Krause, Jr. 1984. The concentration
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Acknowledgments
We thank Lindsay Golsby-Smith, Justin Gleeson, Uriah Makings, Marnie Atkins, Paul Kelly, Tyler Cyronak, and Perrine Mangion for skilful
assistance in the field, and Matheus Carvalho for skilled laboratory analysis. We also thank the insightful comments of the reviewers, which
helped to greatly improve this manuscript.
DTM is funded through an S.C.U Postdoctoral Fellowship. This
research was supported by Australian Research Council grants
(DP110103638, LP110200975, LP100200732, and DP120101645) and
partially inspired by the Coastal Carbon Cluster.
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