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ABSTRACT: It is shown that the PoissonNernstPlanck (PNP) equations share many features with the well
known advectiondiffusion equation. For this latter equation a large number of stabilization procedures have
been developed. The possibilities of applying these to the PNP equations are explored. In particular the classical
SUPG method is treated in some detail and a complete stabilized finite element formulation including a suitable
iterative procedure is given for the PNP equations.
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Finally the mass conservation equations are supple- surplus positive charge. Physically, this corresponds to
mented with an electric charge conservation equation, negatively charged ions being repelled in areas where
i.e. Poissons equation on the form there is a surplus negative charge, whereas positively
charged ions are attracted.
In the important special case where only two mono-
valent species, for example Na+ and Cl , are con-
where is the permittivity and f the fixed charge sidered, and is assumed constant, the Poisson
density in the system. equation is automatically fulfilled (in the steady state,
In the following this system of Ns + 1 equations will provided that and Di are constant and f = 0). The
be referred to as the PoissonNernstPlanck (PNP) mass conservation equations then decouple into two
equations. separate advectiondiffusion equations with velocities
of opposite sign. Such conditions are often assumed
in onedimensional migration experiments aimed at
2.1 Some basic properties of the PNP equations determining the diffusivities of cement pastes by
The PNP equations appear at first glance to be rel- applying a concentration gradient as well as an elec-
atively straight forward to deal with by standard tric potential gradient, see e.g. (Andrade, Sanjuan,
numerical methods, the only source of nonlinearity Recuero, and Rio 1994; Samson, Marchand, and
being the term ki ci in (2). The effect of this term Snyder 2003). On the basis of the analogy between
can, however, be rather significant and effectively lend the ADS and PNP equations we define a species Pclet
the system all the common traits of hyperbolicity, number, in the onedimensional case as
including the problems encountered when applying
standard Galerkin discretizations. To see this, con-
sider the expansion the term (Di ki ) in (2). For
each species i the mass conservation equation is then where lchar is the characteristic length scale of the
given by system and |ki /zi | 39.0 V1 at 25 C.
In the above mentioned migration experiments on
cement pastes, samples of some 35 cm are typi-
cally used together with an externally applied voltage
difference between the two ends of 1020 V. Under
such conditions the species Pclet number is of order
Pei /zi 400800. These numbers are of a magnitude
similar to those typically encountered in problems of
where we have named the different terms inspired by advectivedispersive contaminant transport in soils.
the wellknown advectiondiffusionsorption (ADS)
(or convectiondiffusionreaction) equation, see e.g.
(Codina 1998), 3 NUMERICAL SOLUTION PROCEDURES
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Copyright 2005 Taylor & Francis Group plc, London, UK
where Wi are the weight functions applied to the Ns
species conservation equations and W is the weight
function used for the charge conservation equation. In
the standard Galerkin approximation all weight func-
tions are interpolated in the same way as the shape
functions, i.e.
where
Since most of the residual equations are in fact linear
the Jacobian J = r/x is easily computed analyti-
cally. Assume that the matrices Gi are computed using
Gauss integration, i.e.
and
with B = N.
Using the backward Euler scheme for the tempo-
ral discretization, the fully discretized set of equations
read which is obviously unsymmetric. The total Jacobian is
given by
where
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Copyright 2005 Taylor & Francis Group plc, London, UK
subject to the boundary and initial conditions where
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Copyright 2005 Taylor & Francis Group plc, London, UK
The stabilized mass conservation equations can then
be written as
Downstream compartment
Upstream compartment
where
Sample +
and
0 x
x=0 x = 40 mm
3.5 A stabilized finite difference type scheme
The major contributor to instabilities is the term Na+ : 0.0 300.0
OH : 300.0 300.0
K+ : 800.0 0.0
Cl : 500.0 0.0
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Copyright 2005 Taylor & Francis Group plc, London, UK
the same techniques can be used for the two sets of
800 Pseudo-exact equations. Future work will focus on extension to
Numerical multiple dimensions and suitable strategies for the
700
Concentration (mmol)
600
line/upwind PetrovGalerkin formulation using quadratic
elements. Computer Methods in Applied Mechanics and
500 Engineering 94, 239262.
Codina, R. (1998). On stabilized finite element methods for
400 linear systems of convection diffusionreaction equa-
300 tions. Computer Methods in Applied Mechanics and
Engineering 188, 6182.
200 Cussler, E. (1997). Diffusion: MassTransfer in Fluid Systems.
100 Cambridge: Cambridge University Press.
Forsyth, P. A. and M. C. Kropinski (1997). Monotonicity
0 considerations for saturatedunsaturated subsurface flow.
0 5 10 15 20 25 30 35 40 SIAM Journal of Scientific Computing 18, 13281354.
Distance (mm) Kato, M. (1995). Numerical analysis of the NernstPlanck
Poisson system. Journal of Theoretical Biology 177,
Figure 3. Steady state chloride concentration distribution 299304.
using SUPG stabilized formulation. Kuyucak, S. and T. Bastug (2003). Physics of ion channels.
Journal of Biological Physics 29, 429446.
steady state distribution of chloride as determined Samson, E. and J. Marchand (1999). Numerical solution of
the extended NernstPlanck model. Journal of Colloid
using the standard Galerkin is shown. As refer-
and Interface Science 215, 18.
ence, a pseudoexact solution, computed using 10,000 Samson, E., J. Marchand, J. Robert, and J. Bournazel (1999).
elements, is also shown. As expected the standard Modelling ion diffusion mechanisms in porous media.
Galerkin method leads to significant oscillation near International Journal for Numerical Methods in Engi-
the downstream end. These oscillations will of course neering 46, 20432060.
also be transferred to the flux which is used to compute Samson, E., J. Marchand, and K. Snyder (2003). Calculation
the effective diffusion coefficient. of ionic diffusion coefficients on the basis of migration
In Figure 3 the results from the SUPG stabilized test results. Materials and Structures 36, 156165.
formulation are shown, again using 40 linear ele- Smith, D., P. Pivonka, C. Jungnickel, and S. Fityus (2004).
Theoretical analysis of anion exclusion and diffusive
ments. As seen the benefits of the stabilization are
transport through platy clay soils. Transport in Porous
significant with practically all oscillations having been Media. To be published.
eliminated. Tezduyar, T. and Y. Osawa (2000). Finite element stabi-
lization paramters computed from element matrices and
vectors. Computer Methods in Applied Mechanics and
5 CONCLUSIONS Engineering 190, 411430.
Truc, O., J. Olliviera, and L. Nilsson (2000). Numerical
A numerical treatment of the PoissonNernstPlanck simulation of multispecies transport through saturated
equations based on an analogy with the advection concrete during a migration test MsDiff code. Cement
diffusion equation has been outlined. As shown, much and Concrete Research 30, 15811592.
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