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GNP – Good NIR Practice
Good Results
Good Spectra
Signal/Noise Ratio
16 8 64
Preamp Gain
32
cm-1 cm-1 Scans Scans
2
Good NIR Methods are based on good
Spectra and Reference Values
• In the moment you realize that the spectra are not good, the samples are
probably gone.
3
Good NIR Methods are based on good
Spectra and Reference Values
4
What is the Goal for the Spectrum?
5
One Word about Background
Measurements
6
What is the Goal for the Spectrum?
Optimize the
Signal/Noise Ratio !!!
7
Amplitude and Signal/Noise Ratio
Amplitude
is not equal to
Signal/Noise Ratio !!!
8
Amplitude and Signal/Noise Ratio
9
High Amplitude, good Signal/Noise
10
How to check Signal/Noise Ratio
visually
• Check
smoothness of
single channel
spectrum around
10,000 to
8,000cm-1.
• NOTE: in check
signal mode
always the same
resolution is
used!
Improvement of
S/N by lowering
resolution is not
visible here, only
in measured
spectra!
12
Important Measurement Parameters
• First of all the optimal measurement module and the best accessory must be
chosen.
• The following parameters are most important for the quality of spectra
(i.e. Signal/Noise Ratio) and are fundamental for the robustness of
calibrations and repeatability of NIR predictions.
• Resolution
• Number of scans (measurement time)
• Preamp gain settings for sample and background
• Scanner velocity (only in process)
15
Resolution
• From the start the standard in 1994 resolution for Bruker FT-NIR was
defined as 8 cm-1.
• In an emergency situation you can do because Ident and Quant2 can make
use of spectra with different resolution (interpolation). The first spectrum in
the spectra tables rules the applied data point grid.
16
Resolution
• From the start the standard resolution for Bruker FT-NIR was 8 cm-1.
• This is still valid only for
• transmission measurements of clear liquids in sample compartment or
with transmision probes,
• highly reflecting samples on integrating sphere, such as bright powders
or pellets.
17
Resolution, S/N and Measurement Time
• The FT technology allows to change resolution which has direct effects and
consequences which are quite helpful.
18
Recommended Resolution/Scan Settings
19
Recommended Resolution/Scan Settings
20
Recommended XPM Parameter
21
XPM Settings
• Adapted to
application,
sample type or
needs
• Never change
22
XPM Settings
• Adapted to
application,
sample type or
needs
• Never change
23
XPM Settings
Mandatory of TE-InGaAs,
but not for PbS;
“ON” includes “detector
cooled” (TE-InGaAs) and
“sample temperature stable”
24
XPM Settings
25
XPM Settings
27
XPM Settings
• Adapted to
application,
sample type or
needs
• Never change
28
Preamp Gain Settings
29
Sample Gain Settings
• Use always
sample gain x1
instead of
‘automatic’.
30
IMPORTANT: Preamp Gain Settings
• Separate
settings for
preamp gain for
Sample and
BGR measure-
ments
31
Integrating Sphere with PbS Detector
without Preamp Gain Stages
Sample
Gold-coated
Integrating Sphere
Detector
NIR Beam
32
Preamp Gain Stages of Detectors
(not PbS)
• For the background you chose in many cases a different gain setting which
can be selected separately in the xpm file since OPUS 7.0.
• Probably different settings for other probes and for High Intensity MPA.
33
Preamp Gain Stages of Detectors
(not PbS)
• Except the PbS detector in the integration sphere all detectors are providing
different preamp gain settings.
• By the preamp gain the signal is amplified directly in the detector electronic,
without amplifying the noise (noise is manly introduced by the electronic
after the detector).
• Preamp gain stages and the amplifying factors:
• Ref 1x
• A 3x
• B 30x
• C 300x
34
Dark Sample, Same Resolution and
Measurement time, different Gains
Gain Ref
4
Gain A
Gain B
Gain C
3
Absorbance Units
2 1
0
35
Preamp Gain Stages of Detectors
(not PbS)
• The optimal preamp gain settings for background and sample can only be
found by trial and error. For inhomogeneous and/or moving samples this
must be done during movement of the sample.
• Starting from one preamp gain stage you can estimate the best setting:
36
Preamp Gain Stages of Detectors (not
PbS): Moving Samples with right Gain
37
Preamp Gain Stages of Detectors (not
PbS): Moving Samples with Gain to high
38
Preamp Gain Stages of Detectors (not
PbS): Moving Samples Spectra changes
39
Saturation of Detectors
That’s why you should always check the Single Channel Spectrum in the
Check Signal mode!
40
Check signal (align mode)
• Display limits
set down to
0 cm-1!
41
Check signal (align mode)
• Normal shape
of detector
signal with
sample in
place
42
Saturation of detector (overloaded)
Signal overload
can be detected
by
• Strange shape
around 10,000
cm-1
• Signal goes up
from zero
beyond detector
limit (here
4,000 cm-1)
43
Saturation of detector (overloaded)
Signal goes up
again below the
detector limit
after reaching
zero line (here
4,000 cm-1)
44
Optical Slit & Total Absorbance
45
Which Optical Path Length should I use?
46
Total Absorbances at Transmission
Measurements
• Spectral regions of Total Absorbances are not allowed to use for evaluation
these regions have to be ignored (even in the optimization set up)
47
Pentaerythritol and Dipentaerythritol in
Water
Signal Saturation
4.0
OBVIOUS
3.5
3.0
Can we use
this region?
2.5
2.0
1.5
1.0
0.5
48
0.10
0.08
0.06
0.04
0.02
0.00 Move to SSC
49
Comparison SSC and AB Spectrum
Signal Saturation!!
4
3
2
SSC
1
AB
0
50
Comparison SSC and AB Spectrum
Detail
• Peak
3.0
around
Signal Saturation!!
7.000
cm-1
2.5
cannot
be used!
2.0
1.5
1.0
SSC
AB
0.5
51
Ethanol NIR Spectra
AB Spectra
optical slit
1 mm
2 mm
4
5 mm
10 mm
3
2
1
0
52
Ethanol NIR Spectra
Single Channel Sample Spectra
optical slit
0.14
1 mm
2 mm
5 mm
0.12
10 mm
0.10
0.08
0.06
0.04
0.02
0.00
53
Cyclohexane NIR Spectra
AB Spectra
optical slit
5
1 mm
2 mm
5 mm
10 mm
4
3
2
1
0
54
Cyclohexane NIR Spectra
Single Channel Sample Spectra
optical slit
1 mm
0.25
2 mm
5 mm
10 mm
0.20
0.15
0.10
0.05
0.00
55
NIR AB Spectra of Water
measured with Transmission Probes
5
optical slit
1 mm
2 mm
5 mm
4
10 mm
3
2
1
0
56
NIR Spectra of Water
Single Channel Sample Spectra
optical slit
1 mm
2 mm
0.20
5 mm
10 mm
0.15
0.10
0.05
0.00
57
NIR Spectra of Water
Single Channel Sample Spectra
optical slit
1 mm
2 mm
0.05
5 mm
10 mm
0.04
0.03
0.02
0.01
0.00
58
NIR Spectra of Water
measured with IN271
IN226-10
4
IN226-15
3
2
1
0
59
NIR Single Channel Spectrum of Water
measured with IN271
0.035
0.030
0.025
0.020
0.015
0.010
0.005
0.000
60
NIR Single Channel Spectrum of Water
measured with IN271
0.0014
0.0012
0.0010
0.0008
0.0006
0.0004
0.0002
>0
0.0000
61
Small Amount of C-H in O-H
3.5
Optical Slit
2 mm
5 mm
3.0
2.5
2.0
O-H
1.5
1.0
C-H
C-H
0.5
O-H
10000 9000 8000 7000 6000 5000 4000
Wavenumber cm-1
62
Fiber Optical Cables
Cut-Off
63
Long Wavelength Cutoff due to Fiber
Length
0.5
5m
10m
15m
0.4
20m
30m
50m
0.3
Single channel
100m
0.2
0.1
0.0
64
Fiber Optical Cable
Cut-Off Wavenumbers
0.16
0.14
0.12
0.10
500m 150m 2m
0.08
0.06
0.04
0.02
0.00
65
Influence of Fiber Optical Cable
Length/Coupling
145 m
20+20+50+50 m
spectra after moving
2m
2 m after moving
68
40 kHz Measurements
69
Measurements with 40 kHz scanner
velocity (only for TE-InGaAs)
70
In-line Fermentation Spectra with
Scanner Velocities 10 and 40 kHz
10 kHz
1min
4
scan time
40 kHz
3
Absorbance Units
1min
scan time
2 1
0
71
In-line Spectra of Fermentation with
different Scanner Velocities: O-H-Band
2.6
10 kHz
1min
2.5
scan time
40 kHz
2.4
Absorbance Units
1min
scan time
2.3 2.2
2.1
2.0
72
Measurements with 40 kHz Scanner
Velocity (only for TE-InGaAs)
73
Measurements with 40 kHz Scanner
Velocity (only for TE-InGaAs)
74
On-line Sugarcane Solution:
Cabinet
• IP65 rated
(A/C rated to IP54)
• Houses NIR, PSU, UPS
• Telescopic shelf for easy
access
75
On-line Sugarcane Solution:
Environment
76
Correlation/Trigger Modes
77
The Use of Trigger Modes
78
The Use of Trigger Modes
Stop Start
79
Correlation/Trigger Modes
Correlation Modes
Trigger Modes
Correlation Modes
80
Correlation Modes
IFG_Length_Difference
• The number of interferogram data points is not identical to the nominal
number. This mode should be activated in case of non-frequent and
intense mechanical disturbances.
* The maximum number of scans that will be rejected is the number of scans for the background/sample measurement defined in the
experiment setup.
81
Trigger Modes
82
Trigger Modes
• Example:
in XPM 16 scans are defined
strongly changing amplitude
Trigger Mode Limits: 500 to 5.000 cts (= Interferogram Amplitude Range)
83
Trigger Modes
• Example:
sample inserted, measurement starts
no further check of Interferogram Amplitude Range,
each scan is accumulated until scan number of XPM is reached
84
Trigger Modes
• Example:
sample removed, measurement stops
If the amplitude is below the limit when the measurement starts, the scans
are rejected until the amplitude is in the limits or the number of scans
defined in XPM is reached.
85
Trigger Modes – Setup & Limits
86
Trigger Modes – Setup & Limits
87
Trigger Modes – Setup & Limits
88
Trigger Modes – Setup & Limits
89
Trigger Modes – Setup & Limits
90
Trigger Modes – Setup & Limits
Useful Settings
108 = 44 + 64
ON & Signal Amplitude Limits
172 = 44 + 128
ON & Start on Signal Amplitude Limits
236 = 44 + 64 + 128
ON & Signal Amplitude Limits & Start on
428 = 44 + 128 + 256
ON & Start & Stop on Signal Amplitude Limits
91
Trigger Modes – Setup & Limits
92
Trigger Modes – XPM Settings
93
Trigger Modes – XPM Settings
94
Aspects of NIR Analysis of Liquids
95
Aspects of NIR Analysis of Liquids
• Pathlength
• 1, 2, 5 or 10mm?
• Sample presentation and handling
• Vial, flow cell or probe?
• Sample temperature
• Temperature control required?
• Water content of sample
• Viscosity
• Influences the selection of
pathlength and sample
presentation/handling
• Opaque or cloudy liquids
• Transmission measurements
limited; Transflection as
alternative
96
Aspects of NIR Analysis of Liquids:
Optical Pathlength
Beer‘s law:
A = el * c * d
el is the Absorption Coefficient and is
specific for
97
NIR Spectrum of CHCl3
98
Overtone of combination band and 2nd
Overtone of C-H vibration in ChCl3
99
NIR Transmission Spectra of Solvents
and Water with 1 mm Pathlength
2.0
1 mm
Pathlength
• Water
• Acetone
• Cyclohexane
• Ethanol
• Methanol
Absorption
0.0
100
NIR Transmission Spectra of Solvents
and Water with 2 mm Pathlength
2.0
2 mm
Pathlength
• Water
• Acetone
• Cyclohexane
• Ethanol
• Methanol
Absorption
0.0
101
NIR Transmission Spectra of Solvents
and Water with 5 mm Pathlength
2.0
5 mm
Pathlength
• Water
• Acetone
• Cyclohexane
• Ethanol
• Methanol
Absorption
0.0
102
NIR Transmission Spectra of Solvents
and Water with 10 mm Pathlength
2.0
10 mm
Pathlength
• Water
• Acetone
• Cyclohexane
• Ethanol
• Methanol
Absorption
0.0
103
Characteristics of TE-InGaAs Detector in
NIR Region
Amplitude
104
Aspects of NIR Analysis of Liquids
105
NIR Spectra of Water in Range of
0 to 95oC
1.4
1.2
Absorbance Units
1.0
0.8
0.6
0.4
0.2
0.0
106
Toluene NIR Spectra in Range of
0 to 100oC
0.06
0.05
0.04
Absorbance Units
0.03
0.02
0.01
-0.01 0.0
107
Changes of Water Spectra with
Temperature
0 °C
5 °C
10 °C
1.45
15 °C
20 °C
25 °C
30 °C
Absorbance Units
1.40
35 °C
40 °C
45 °C
50 °C
1.35
55 °C
60 °C
65 °C
70 °C
1.30
75 °C
80 °C
85 °C
90 °C
1.25
95 °C
7100 7000 6900 6800 6700
100 °C
Wavenumber cm-1
108
Changes of Toluene Spectra with
Temperature1.165
25 °C
30 °C
1.160
35 °C
40 °C
Absorbance Units
45 °C
1.155
50 °C
55 °C
1.150
60 °C
65 °C
70 °C
1.145
75 °C
80 °C
85 °C
1.140
90 °C
95 °C
1.135
109
Changes of Toluene Spectra with
Temperature
0 °C
5 °C
10 °C
15 °C
20 °C
0.4
25 °C
30 °C
Absorbance Units
35 °C
0.2
40 °C
45 °C
50 °C
0.0
55 °C
60 °C
65 °C
-0.2
70 °C
75 °C
80 °C
-0.4
85 °C
7500 7000 6500 6000
90 °C
Wavenumber cm-1 95 °C
100 °C
110
111
Repeatability in Terms of Signal/Noise
Ratio
• Rape seed
8 cm-1
0.4
spectra
16 cm-1 (small
detail)
0.3 0.2
Absorbance Units
0.0 0.1
-0.1
-0.2
-0.3
4680 4670 4660 4650 4640 4630 4620 4610 4600 4590
Wavenumber cm-1
Spectra of Glucose
Resolution 8 and 16cm-1
1.8
16 cm-1
1.6
8 cm-1
1.4 1.2
Absorbance Units
0.8 1.0
0.6
0.4
0.2
• Not many
16 cm-1 differences in
8 cm-1 these spectral
0.60
regions.
Absorbance Units
0.50 0.55
0.45
0.40
0.35
• Some
16 cm-1 differences in
0.85
• Are these
differences
0.75
relevant?
0.70 0.65
0.60
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