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FRAXE Mutation Analysis in Three: Spanish Families
FRAXE Mutation Analysis in Three: Spanish Families
Very little is known about the phenotype of contain expanded, hypermethylated, and unstable
FRAXE-positive individuals and the relation CGG (or GCC) repeats near CpG islands.
between the genotype/phenotype and geno- The fragile site FRAXA is associated with the fragile
typekytogenetic expression. We describe X syndrome, the most common form of inherited men-
three families with normal and mildly af- tal retardation [for review, see Fryns, 19891, which is
fected individuals and a severely retarded molecularly characterized by an unstable CGG repeat
male expressing fragility at the FRAXE locus a t the 5' end of the FMR-1 gene [Verkerk et al., 19911.
or presenting different expansions at the Abnormal expansion of the repeat beyond approxi-
CGG FRAXE triplet. In addition, we analyze mately 230 copies results in the methylation of CpG
the FRAXE mutation in sperm DNA from a residues and transcriptional silencing of the gene
retarded male carrier with a handicapped [Pieretti et al., 19911.
daughter expressing fragility at the FRAXE In some families ascertained by fragility in the distal
locus. Mental status in FRAXE individuals is Xq, in which FRAXA CGG amplification is absent, flu-
highly variable and, although mild mental orescence in situ hybridization shows that the fragility
retardation is observed in most cases, sev- lies distal to FRAXA and corresponds to FRAXE or
eral carrier males are apparently normal. It FRAXF loci.
seems that methylation is not as strictly as- The FRAXE fragile site has been cloned [Knight
sociated with size of CGG triplets in the et al., 19931, and individuals with cytogenetic expres-
FRAXE locus as in FRAXA, and it is possible sion have amplification of this CGG repeat. In normal
that normal carrier individuals with fully individuals, 6-25 copies of the triplet are present, with
methylated increments in lymphocytes have an average of 15 copies. In individuals who express
FRAXE, more than 200 copies of the triplet can be
a certain proportion of unmethylated alleles found. In these individuals, a CpG island proximal to
in the critical (i.e., neural) tissues. FRAXE
the CGG repeat was methylated, suggesting that
mutation is apparently similar to FRAXA in methylation could play a role similar to FRAXA in the
that males with somatic large methylated in- inactivation of a putative gene in the FRAXE region.
crements are carriers of small unmethylated Whereas FRAXF fragility does not contribute to an
Ones in germinal cells. 0 1996 Wiley-Liss, Inc. obvious phenotype in carrier males [Parrish et al.,
19941, a relation between FRAXJ? and mild mental im-
KEY WORDS: fragile site, FRAXE, X-linked pairment is suggested by the occurrence of more men-
mental retardation tally impaired male and female carriers, after remov-
ing index cases in affected families, than could be
expected by chance [Mulley et al., 19951.
INTRODUCTION Very little is known about the phenotype of FRAXE-
positive individuals and the relation between the geno-
Three folate-sensitive fragile sites, FRAXA, FRAXE, typelphenotype and genotypelcytogenetic expression.
and FRAXF, have been identified on the distal end of In general, reported males who did express the frag-
the long arm of the X chromosome (Xq), and these sites ile site FRAXE were mildly retarded. But several indi-
viduals considered intellectually and physically normal
expressed the FRAXE fragile site; amplification of the
CGG repeat showed methylation across the FRAXE
Received for publication September 12, 1995; revision received
January 2,1996.
CpG island [Knight et al., 1993, 1994; Mulley et al.,
Address reprint requests to Pablo Carbonell, Unidad de 19951. In addition, a mildly retarded male, with a small
Genetica Humana, Centro de Bioquimica y Genetica Clinica, Con- methylated increment, did not express the FRAXE lo-
junto Residencial, Apartado 61,30100 Espinardo, Murcia, Spain. cus [Knight et al., 19941.
0 1996 Wiley-Liss, Inc.
FRAXE Mutation Analysis 435
The variable penetrance observed in previously re- Clinical Data in Families 2 and 3
ported FRAXE families, in which mental impairment is Family 2 (Fig lb). The propositus (111-1)is a 19-
not apparently cosegregating with the expression of the year-old boy with severe mental retardation and hyper-
fragile site or with the triplet increment, might be ex- active behavior. He has a brachycephalic skull with
plained by the existence of somatic mosaicism with nor- normal head circumference (56.5 cm), and craniofacial
mal expression of the FRAXE gene product in the criti- disproportion with a narrow and sloping forehead and
cal tissues [Knight et al., 19931. broad midface. The supraorbital ridges are prominent.
The FRAXE expanded CGG repeat is unstable when The occiput is flattened with low hairline in the broad
passing through either the male or female line. Gener- neck and forehead.
ally, it expands when passing through the female line, The interpupilar distance is normal, but he has mild
although some reductions have been seen. By contrast, telecanthus and blepharophimosis. He has a broad
carrier males generally transmit an unmethylated re- nose and nares, with a wide nasal septum and normal
duced fragment to their normal daughters, a situation philtrum, full lips, and high arched palate. The ears are
similar to that seen in FRAXA,where only small ex- not prominent and are normal in size and position, with
pansions are present in the sperm of carriers males posterior rotation and attached ear lobe.
[Reyners et al., 19931. However, a report of an affected Other anomalies are a narrow chest, with pectus ex-
male, apparently mosaic for FRAXE, who has had an cavatum of the lower sternum and pectus carinatus of
affected nonexpressing daughter, has been published the upper sternum, and mild kyphoscoliosis. The limbs
[Hamel et al., 19941. shows wide hands with clinodactyly of the fourth and
We describe three families with normal and mildly fifth fingers and normal extensibility of joints. Testes
affected individuals and a severely retarded male who are normal. The stature is 170 cm.
expresses fragility a t the FRAXE locus or presents dif- Individual 111-4 is a 13-year-old boy, who performs
ferent expansions at the CGG FRAXE triplets. In addi- poorly at school but is not hyperactive. At physical ex-
tion, we analyze the FRAXE mutation in sperm DNA amination, he shows brachycephaly with a normal
from a retarded carrier male with a handicapped head circumference (55 cm), broad neck, sloping fore-
daughter who expresses fragility in the FRAXE locus. head, prominent supraorbital ridges, flattened occiput
with low hairline in the neck and forehead, broad nose
and nasal bridge with anteverted nostrils and wide sep-
PATIENTS, MATERIAL, AND METHODS tum, left epicanthal fold, telecanthus and normal inter-
Family Data pupillary distance, full lips, high palate, and slight mi-
The families described in this report (Fig. 1)were as- crognathia. The auricles are not prominent and are
certained by the referral of a mentally impaired person normal in size and position, with posterior rotation and
for routine cytogenetic analysis, and this led to the de- attached ear lobe.
tection of a fragile site in the distal Xq. Other anomalies include pectus excavatum of the
There were more mentally affected members in fam- lower sternum, pectus carinatus of the upper sternum,
ilies 1and 2 than in family 3. In families 2 and 3, cyto- and mild kyphoscoliosis. He has normal hands and ex-
genetic prenatal diagnosis was done in two carrier tensibility of joints, cubitus valgus, and pes planus. His
women expressing fragility at Xq27-28. All the families testes are normal.
were excluded as FRAXA and classified as FRAXE by Family 3 (Fig lc). The index case (11-3) is a
direct Southern analysis with probes StB12.3 and 23-year-old man with severe mental retardation. He
OxE20. In family 1, segregation analyses of the fragile has brachycephalia and mild microcephaly with an
X chromosome was analyzed with 1Al and U6.2 probes. abnormal head circumference (53 cm, 3rd centile), a
Families 1 and 2 were reported as families 5 and 6 in narrow forehead, and flattened occiput. The auricles
Mulley et al. [19951. are normal, and he has a high arched palate. He has
In family 1(Fig. la), the propositus (11-6)is a slightly pectus excavatum and carinatus. Hands and extensi-
retarded 13-year-oldboy. His maternal cousin (11-9)is a bility of joints are normal. His testes are abnormal,
moderately retarded 19-year-old boy. The patient’s with a volume of 50 ml in the left testis and 35 ml in the
mother (1-1)is mildly retarded, and his aunt (1-3) has right testis.
borderline intelligence.
In family 2 (Fig. lb), the index case (111-1) is a Cytogenetic Analysis
19-year-oldseverely retarded boy. His youngest brother Duplicate peripheral blood cultures were set in
(111-4), 13 years old, is mildly retarded and needs spe- Hepes-buffered 199 medium supplemented with 3% fe-
cial schooling. Two brothers and 1sister are apparently tal calf serum. One culture induced with methotrexate
normal. The mother (11-2) is mildly retarded, and the (5 pg/ml) or FUdR 0.1 M during the final 24 hr. Fifty
aunt (11-3)is dull. Two uncles (11-7 and 11-8)are slightly GTG-banded metaphases were examined from each
retarded, and the daughter of one (111-8)is 13 years old culture.
and mildly retarded. The other relatives are apparently Molecular Analysis
normal.
In family 3 (Fig. lc), the index case (11-3) is a Total DNA was extracted by standard methods from
23-year-old mentally retarded man. His sister (11-11, blood and sperm samples. Ten micrograms of DNA
37 years old, is apparently normal. No other relatives were digested from each case. The digested samples
are mentally retarded. were run on 20-x-25-cm 0.8% agarose gels and allowed
436 Carbonell et al.
a
66
0%
0 . 320'
I
I1
I11
1 2 3
I
52 N.T. N.T. N.T.
1
18% 10% 23% 35%
(1- (0.6- (0.4- (1.6-
2 . 8 ) 'O0' 2 . 8 ) loo' 2 .8) 100'2.
I1
5 6 1 8 9
111
1 " 2 1 . 5 6
P
B
13%
0 .490'
I
1 ,N.T . N.T. N.T. N.T. N.T. N.T
16% 0% 30% 0% 0%
0
I1
6 1
I11
1 2 1 I
Fig. 1. Pedigrees of families 1 (a),2 (b),and 3 ( c ) , with I& values, percentage of cytogenetic expres-
sion of fragile site, and increment (A, in Kb) for FRAXE locus. The plus sign indicates that more than 1
expanded fragment exists. The smear limits are shown in parentheses. The estimated degree of methy-
lation as a percentage, for the FRAXE-associated CpG island, is given as a superscript to the FRAXE
value. N.T. and the minus sign indicate untested values. BlacWwhite squares and circles indicate
FRAXE + individuals, and whiteblack squares and circles indicate mentally impaired individuals.
to migrate at 65 V for 20 hr. Electrophoresed samples of the expanded HindIII fragment and the expanded
were transferred onto a Hybond-N' membrane (Amer- HindIIUNotI fragment.
sham). FRAXA locus analysis was performed by hy- Size increments are expressed as delta (A) over the nor-
bridizing a 32P-labeledStB12.3 probe with EcoRI/EagI mal fragment (active X chromosome of approximately
double-digested DNA samples. FRAXE locus analysis 2.8 Kb and inactive X chromosome of approximately5.2 Kb).
was performed by hybridizing a 32P-labeledOxE20 probe
with DNA samples HindIII digested to measure size in- Psychological Assessment
crement. Methylation status of the FRAXE-associated To determine the overall I& of patients and relatives,
CpG islands was assessed by HindIIUNotI double di- the Weschler (WISC or WAIS) and Stanford-Binet
gestion and estimated simply as the relative intensity (Terman-Merrill, L-M) scales were applied.
FRAXE Mutation Analysis 437
Family 1 (Figs. la, 2a)
This family was referred to confirm the FRAXA mu-
tation because a high degree of fragility was observed
in the propositus (11-6) when cultured lymphocytes
were induced for FRAXA expression.
Because none of the studied relatives showed incre-
ments at the FRAXA locus with the StB12.3 probe
(data not shown), a FRAXE or FRAXF fragile site was
suspected, without the association of mental retarda-
tion [Sutherland and Baker, 19921.
To assess the carrier status of the apparently normal
nonexpressing pregnant cousin (11-8),linkage analysis
with Xq27-28 probes 1Al and U6.2 was performed.
This analysis established that mother (1-1) of the
propositus, the apparently normal brother and sisters
(11-3, 11-2, and 11-5), and the aunts (1-2 and 1-3) were
carriers of the mutated X, but the pregnant cousin
was not.
After the cloning of the FRAXE locus [Knight et al.,
19931, we reinvestigated this family. Figure 2a shows
increments and methylation status a t the FRAXE locus
with probe OxE20. The propositus (11-6))a slightly re-
tarded boy (I& of 66) with 43% of fragility expression,
showed a broad, fully methylated band over 7.5 Kb
(A = 2.3) and a slight unmethylated band of 3.2 kb
(A = 0.4).
All the females in generation I were carriers of short
extra fragments (200-300 pb) that were either meth-
ylated or unmethylated over the inactive or active
X chromosome, respectively. These fragments were in-
cremented and methylated when passed to their sons
and daugthers. The apparently normal sister (11-2)had
2 bands, 1at 2.8 Kb and another weak band a t 5.2, plus
an extra methylated band of 6.5 kb (A = 1.3), which was
absent in her children (111-1and 111-2).The normal sis-
ter (11-5) had 2 bands at the normal range size, plus a
methylated fragment at 6.7 kb (A = 1.5; not shown in
Fig. 2B). The normal carrier brother (11-3) surprisingly
showed a mosaic pattern with 2 fragments of 3.4 Kb
and 5.8 Kb (A = 0.6) over the unmethylated and meth-
ylated normal fragments. Individuals 11-1, 11-4, and
11-7 had normal-sized fragments.
Individual 11-9 is a moderately retarded boy (IQ of
49), who did not express fragility, with a nearly fully
methylated increment of 0.7 Kb a t the FRAXE locus.
His sister (11-8) is not a carrier, as we demonstrated
previously.
Mental status in FRAXE individuals is highly vari- family 1, 3 women in generation I have small incre-
able, and even if mild mental retardation is observed in ments of 200-300 bp. All of them transmitted their al-
most cases, several carrier males have been reported to leles as incremented and partially or fully methylated
be apparently normal. In 1case, the normal carrier was fragments, which may reflect less stable behavior of
a mosaic with small unmethylated and large meth- small increments at this locus.
ylated increments [individual 2 in family 2 reported by Increments and reductions of the CGG triplet have
Knight et al., 19931. In another case, the individual been observed in female transmission of FRAXE muta-
showed a mosaic pattern of methylation, with an incre- tion. Initially, several transmissions of the FRAXE mu-
mented fragment of 1.1Kb 50% methylated [individual tation from carrier males t o their normal carrier
IV-2 in family 2 reported by Mulley et al., 19951. Other daugthers, with reduction of the triplet number, were
individuals showed fully methylated large increments reported [Knight et a1.,1993, 1994; Mulley et al., 19951.
[Knight et al., 1994; Mulley et al., 19951. All ofthem ex- This fact indicates a similarity to FRAXA in that only
pressed FRAXE. premutated alleles are present in the sperm of full
In family 1, 11-3 showed a mosaic pattern for meth- mutation carrier males in peripheral lymphocytes
ylation with an incremented fragment of 600 bp 50% [Reyners et al., 19931. However, in 1 case, a mentally
methylated. This individual was apparently normal by impaired female resulted with an incremented meth-
clinical impression, although an aggressive character ylated fragment of 0.8 Kb [Hamel et al., 19941. In family
was noted. His I& was 101. Cytogenetic fragility was 2, the affected carrier male 11-7, who showed a fully
not tested. methylated smear from 0.4 t o 2.8 Kb, trasmitted a frag-
Individual 111-3 in family 3 showed a broad, fully ment of 0.4 Kb, nearly fully methylated, to his slightly
methylated smear, and he expressed 16% of fragility. retarded daugther (111-8; I& of 57). This girl, unlike the
This carrier individual showed normal behavior with- previously reported one, expressed fragility a t Xqter.
out apparent mental impairment. In contrast, mosaic We studied the elongated FRAXE fragment in sperm
carrier males 11-6 and 11-9 from family 1and 111-4 from DNA from 11-7 and observed an incremented fragment
family 2 showed mild mental retardation. of 300 bp that was not methylated. Apparently, FRAXE
In family 2, 2 carrier brothers showed a very differ- mutation is similar to FRAXA,as males with somatic
ent phenotype: 111-1 was a hyperactive, severely re- large methylated increments are carriers of small un-
tarded boy and 111-4 merely showed poor performance methylated ones in germinal cells. Although the ob-
at school and no hyperactivity. This boy demonstrated served biased inactivation in 111-8 could be due to spe-
a mosaic pattern, with a 300-bp incremented unmeth- cific inactivation of the mutated X chromosome, this
ylated fragment plus a methylated smear. bias could be a consequence of the random X chromo-
This apparent dissociation between mental retarda-
some inactivation in females.
tion, size increment, and methylation status at the
Although it seems likely that the FRAXE phenotype
FRAXE locus might be explained by tissue mosaicism, results from the loss of expression of a gene, the
which showed different increments and methylation
patterns in different tissues. The same has been ob- FRAXE mutation might affect FMR-1 expression
served in myotonic dystrophy [Ashizawa et al., 19931. [Knight et al., 19941, similar to the transcriptional in-
It is noteworthy that, in contrast with FRAXA,a vague hibition reported a t the IDS locus of FRAXA individu-
correlation has been observed between expanded als [Clarke et al., 19921. If so, similarity to the FRAXA
triplets a t FRAXE and methylation status in the asso- phenotype is possible in some FRAXE carriers. In fam-
ciated CpG island; carrier individuals with increments ily 2, the index case (111-1)is a severely retarded male
of 1.1 Kb [Mulley et al., 19951 or 600 bp [this study1 with hyperactive and repetitive behavior, which is fre-
that are 50% methylated, when combined with incre- quently found in FRAXA-effected males. Moreover, the
ments of 400 bp [Mulley et al., 19951or 550 bp [Knight propositus in family 3 (11-3) showed macroorchidism at
et al., 19941 that are fully methylated have been clinical evaluation. None of these traits has been re-
described. ported previously in FRAXE males.
FRAXE locus methylation may not as strictly associ- Aside from the heterogeneous pattern shown by
ated with size at CGG triplets as that in FRAXA,and FRAXE mutation, we emphasize the significant role
it is possible that normal carrier individuals with that the familial environment might play on the phe-
fully methylated increments in lymphocytes have a cer- notype developed by carrier individuals because stimu-
tain proportion of unmethylated aleles in the critical lating training could significantly modulate the mild
(i.e., neural) tissues. phenotype. All the families in the present study live un-
Carrier females also showed a variable phenotype; der poor sociocultural conditions.
however, this might be influenced by random X inacti- FRAXE mutation seems to be less frequent than
vation ocurring early in embryogenesis, which can FRAXA.We found 3 FRAXE families among 70 studied
skew the proportion of active and inactive X chromo- with fragile X expression, but because of the very mild
somes. phenotype shown in FRAXE carrier individuals, they
In contrast with FRAXA,where nonpenetrant carrier might not come t o our attention as frequently as
males have only small unmethylated increments (pre- FRAXA carriers.
mutation), the apparently unaffected FRAXE carrier Screening children with learning difficulties and oth-
males have a more complex pattern with small un- ers to assess the frequency of FRAXE mutation and the
methylated increments or large methylated ones. In clinical variety of the disease should be done.
440 Carbonell et al.
ACKNOWLEDGMENTS cleotide repeat amplification and hypermethylation of a CpG is-
land in FRAXE mental retardation. Cell 74:127-134.
We thank Dr. J.-L. Mandel and Drs. K.E. Davies and Knight SJL, Voelckel MA, Hirst MC, Flannery AV, Moncla A, Davies
S.I.L. Knight for providing the StB12.3 and OxE20 KA (1994): Triplet repeat expansion at the FRAXE locus and
probes and the families described here for their kind X-linked mild mental handicap. Am J Hum Genet 55:81-86.
cooperation. This work was supported by grant 931 Mulley JC, Yu S, Loesch DZ, Hay DA, Donnelly A, Gedeon AK, Car-
bone11 P, Lopez I, Glover G, Gabarron J, Yu PWL, Baker E, Haan
0004-00 from the Fondo de Investigaciones Sanitarias EA, Hockey A, Knight SJL, Davies KE, Richards RI, Sutherland
de la Seguridad Social. GR (1995): FRAXE and mental retardation. J Med Genet 32:
162-169.
Parrish JE, Oostra BA, Verkerk AJMH, Richards CS, Reynolds J ,
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