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Adenosine triphosphate testing - Recent advances in the differention


between bacterial and fungal contamination and detection of dormant
microbes in fuel and fuel-associated water...

Article · January 2013

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Frederick J. Passman Jeremy Duguay


Biodeterioration Control Associates, Inc. LuminUltra Technologies Ltd.
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9th International Colloquium Fuels
Technische Akademie Esslingen
15-17 January 2013

Recent advances in the detection and quantification of


microbial contamination in fuel systems.

Dr. Frederick J. Passman, CFMS, Fellow STLE


Biodeterioration Control Associates, Inc., Princeton New Jersey, USA
fredp@biodeterioration-control.com

Gulerana Maradukhel
LuminUltra Technologies Ltd., Fredericton, New Brunswick, Canada

Michael Merks
LuminUltra Technologies Ltd., Fredericton, New Brunswick, Canada

Summary

Quantification of adenosine triphosphate (ATP) in fuels and fuel-associated waters was first presented at the 6th
International Fuels Colloquium in 2007. At the time, two issues limited the overall usefulness of ATP as a test
parameter: inability to detect dormant microbes and inability to differentiate between bacteria and fungi. Recent
research has addressed both of these issues. This paper presents protocols for detecting dormant microbes – identified
as microbes that are not metabolically active in the sampled fluid, but which can become active under appropriate
conditions – and for differentiating fungi from bacteria. The newly developed protocols achieve >90% detection of
bacterial endospores in fuels and fuel-associated water. They also provide >90% differentiation between bacterial and
fungal contaminants in these fluids

1. Introduction µL of Luciferin-Luciferase reagent in a 12 x 55 mm


cuvette, and the cuvette was placed into a luminometer
The measurement of adenosine triphosphate (ATP) in to obtain a relative light unit (RLU) reading. All RLU
fuels and fuel-associated water, using ASTM Method data were converted to pg ATP mL-1 by comparison
D7687 [1], has proven to be a fast, accurate and precise with the RUL of a 1.0 ng mL-1 ATP reference solution.
tool for quantifying microbial contamination in fuel For the dormant cell detection effort, pg ATP mL-1 data
systems [2, 3]. However, the ASTM test method has were transformed to Log10 pg ATP mL-1.
two limitations: it does not detect microbes that are
dormant in the sample; nor does it differentiate between 2.2 Detecting Dormant Cells
bacteria and fungi. Dormant microbes include fungal
spores, bacterial endospores and persistor cells. This A commercially available, Bacillus thermogenesis,
paper presents protocols for detecting dormant cells spore paste preparation ((BTK; Safer's BTK Biological
and for differentiating between bacteria and fungi. Insecticide; Woodstream Corp, Brampton ON) was
used to model a dormant bacterial population. Based
2. Materials and Methods on the protocol described by Min et al. [4], BTK was
2.1. Adenosine Triphosphate Testing suspended in liquid media to give 1.3 x 107 IU mL-1.
During preliminary experiments, ATP was tested im-
ASTM Method D7687 was used for all ATP tests. mediately after BTK suspensions were prepared and
Briefly, a 5 mL sample was pressure filtered through a after suspensions had incubated in a 37 C water bath
0.7 µm in-line, glass-fiber, depth filter. The retentate for 15 min. Ultimately, the 37C immersion period was
was then washed with a proprietary rinsing solution (all optimized at 30 min. Four media were compared for
ATP test reagents are from LuminUltra Technologies, their effect on endospore germination: brain-heart infu-
Ltd., Fredericton, NB, Canada) and air dried. A propri- sion broth (BHI; DIFCO, Becton Dickinson, Franklin
etary lysing regent was then used to extract ATP into a Lakes, NJ), LiquiCult TM broth (LCB; MCE, Inc., Lake
17 x150 mm reaction tube. The 1.0 mL extract was Placid, NY), nutrient broth (DIFCO) and trypticase soy
then diluted with 9.0 mL of a proprietary buffer. Final- broth (TSB; DIFCO). After determining the broth that
ly, 100 µL of diluted ATP extract was mixed with 100 produced the greatest post-induction yield, ATP was
tested as a function of germination induction time at mass retention of 5.0 mL untreated MWF with biomass
37C in TSB. All testing was performed in duplicate or retention of 5.0 mL of MWF to which 0.5 mL of sur-
triplicate. factant solution had been added and shaken vigorously
for 30 sec, before filtration.
2.3 Bacterial and Fungal Contaminant Differentia-
tion 3. Results
3.1 Detecting Dormant Cells
2.3.1 Test Microbes
Four growth media were tested for BTK ATP concen-
Selected for its size (5 to 10 µm dia) and single-cell tration before and after heat-treatment (30 min at 37
morphology, commercially available Saccharomyces C). Fig 1 shows the Log10 pg ATP mL-1 data. One-
cerevisiae – as baker’s yeast (Fleischmann’s – Active way analysis of variance (ANOVA) of the initial and
Dry Yeast; ACH Food Companies, Inc., Memphis, TN, post heat-treatment data sets indicated that ATP recov-
USA), suspended in Sabouraud-dextrose broth (Oxoid, eries varied significantly among the growth media. In
Ltd, Basingstoke, Hampshire, UK) – was used as the this series, TSB provided the greatest increased ATP-
representative fungus for this method development yield between pre and post treated testing. The BHI
effort. An uncharacterized, Gram negative bacterium, medium provided the highest post-treatment ATP
previously isolated from a contaminated metalworking yields. Consequently, BHI and TSB were selected for
fluid (MWF) sample, was used as the representative further testing.
bacterium.

2.3.2 Filtration Media

The following filter media were evaluated: glass fiber


filters mixed cellulose esters (MCE; 5 µm; EMD Milli-
pore Corporation, Billerica, MA, USA), polycarbonate
(PC; 12 µm, 10 µm and 8 µm; EMD Millipore Corpo-
ration, Billerica, MA, USA), polyvinylidene difluoride
(PVDF; 5.0 µm; EMD Millipore Corporation, Billerica,
MA, USA) and polytetrafluoroethylene (PTFE; 5.0 µm;
Whatman GmbH, Dassel, Germany). The PVDF and
PTFE filters were supplied as in-line, syringe filters in
Fig 1. ATP concentration as a function of growth
housings. The other filtration media were 25 mm dia
medium.
filter disks. Filter disks were placed into Millipore in-
line filter housings for use. During testing, each of the
Duplicate series of BHI and TSB were spiked with
described filters were placed in series with the ASTM
BTK at 2, 3, 4, 5, 6 and 7Log10 dilutions of the spore
D7687 standard in-line filter so that the larger pore-size
paste (1Log dilution was unfilterable). The Log pg
filters were positioned upstream of the standard D7687
ATP mL-1 versus Log dilution factor (DF) was com-
filter. In order to test filtration efficiency, sample ATP
pared by two-way ANOVA and by comparison of the
was tested on both filtered and unfiltered portions.
dilution curves. The ANOVA indicated that the results
Efficiencies were computed as ratios of duplicate tests
were significantly different between the two media (Fobs
before and after filtration. The target filtration effi-
= 148; Fcrit[0.95] = 4.1). The dilution curves (Fig 2)
ciencies were <10 % of total ATP being recovered in
showed that TSB’s trend line slope was closer to -1.0
the yeast filtrate (>90% in the yeast retentate) and
than that for BHI. At lower DF, ATP recovery from
>90% of total ATP being recovered in the bacterial
TSB was greater than from BHI. Based on these re-
filtrate (>90% passing through the larger pore-size
sults, TSB was selected as the recovery medium.
filter and being captured by the D7687 filter).

2.3.3 Surfactants

Two surfactants were evaluated for their ability to dis-


aggregate bacterial flocs without lysing either bacteria
or fungi. Droysperse CB-D (Unichem Technologies,
Inc, Atlanta, GA) was tested at 1.8%, 0.9%, 0.45% and
0.045% (v/v), and Octylphenol ethylene oxide conden-
sate (Triton ™ X-100, Sigma-Aldrich, St. Louis, MO)
was tested at 0.8%, 0.4%, 0.2% and 0.1% (v/v). In all
cases, 10x working stocks were prepared in deionized
water. Performance was evaluated by comparing bio-
Fig 2. Comparison of ATP concentration versus
Log10 dilution factor for BTK in BHI and TSB. Table 1. Effect of filter medium and pore-size on S.
The final development step was to determine the opti- cerevisiae ATP retention.
mal heating period. The objective was to provide max- Fitler pg ATP mL-1 AVG %
Pore size (µm) Total Filtrate
medium Retention
imum opportunity for germination before the first gen- AVG SD AVG SD
eration of geminated endospores reproduced. Dupli- MCE 5.0 679 107 98 42 86%
PC 12.0 679 107 527 323 22%
cate runs were tested and each sample was tested in 10.0 679 107 444 47 35%
8.0 679 107 392 60 42%
duplicate; generating for ATP results for BTK in TSB PTFE 5.0 986 225 12 225 99%
at each time interval. The data are presented in Fig 3 PVDF 5.0 679 107 88 8 87%

without error bars. Coefficients of variation were all


≤0.9%. Based on the results, a 30 min incubation peri- The PTFE evaluation was performed on a different day
od was selected. from the other tests. Consequently, the total S. cere-
visiae ATP biomass differed from the totals reported
for the other filtration media.
-1
Log pg ATP mL Subsequent studies focused on PTFE because it re-
tained nearly 100% of the S. cerevisiae ATP, and
PVDF because data variability was among replicates
was smallest (coefficient of variation – CV% – =7%).
-1
ΔLog pg ATP mL dt Having demonstrated good fungal biomass retention,
the next experiment evaluated bacterial retention. Ta-
ble 2 summarises the results of these tests. Again,
Total ATP reflects ASTM D7687 results and Filtrate
ATP reflects D7687 run on 0.5µm PTFE filter filtrates.
Fig 3. Log10 pgATP mL-1 as a function of BTK
incubation time in TSB at 37 C. Table 2. Effect of filter medium on bacterial ATP
retention
3.2 Differentiating Between Bacteria and Fungi Fitler pg ATP mL-1 %
Microbe Total Filtrate
Nominal pore size (NPS), electrostatic properties and medium
AVG SD AVG SD
Retention

flow-path geometry affect size separation significantly. PTFE Bactera 3,928 N.D. 1,029 36 74%
Consequently, our strategy was to identify a filtration Yeast 1,435 123 12 4 99%
PVDF Bactera 1,485 36 977 5 34%
medium that would consistently retain >90% of fungal Yeast 986 225 18 4 98%
cells and <10% of bacterial cells suspended in samples.
We selected S. cerevisiae as the model fungus for our On a percentage basis, the 5.0 m PTFE medium re-
method development effort because it is a single-cell of tained more than double the bacterial biomass as did
its relatively uniform, ovoid shape and size (5 to 10 m the PVDF medium. Consequently, PVDF was selected
dia). Filter media that retained S. cerevisiae could as the candidate medium for method refinement. Alt-
reasonably be expected to retain filamentous fungi. We hough 5.0 m PVDF worked well for bacteria and
selected the uncharacterized Gram negative rod, pri- fungi individually, we decided to evaluate its efficacy
marily as a matter of convenience and secondarily, for separating mixed suspensions. As demonstrated in
because of its tendency to form aggregate masses Table 3, the medium quantitatively retained S. cere-
(flocs). Again, our assumption was that if we could visiae and permitted the bacteria to pass.
effectively disaggregate flocs of our test bacterium, the
protocol would have a good chance of being broadly Table 3. Size differential filtration to separate bac-
applicable. teria and fungi.
pg ATP mL-1 Observed Expected Criterion
Microbe Total Filtrate % % %
Table 1 summarizes the results of the filtration medium 100% B
AVG
788
SD
78
AVG
806
SD
56
Retention Retention
-2% 0%
Retention
<10%
evaluation on S. cerevisiae suspensions. In these ex- 75% B + 25% Y 800 62 651 30 19% 25% 15 to 35%

periments, 5.0 m MCE, PTFE and PVDF met or ap-


50% B + 50% Y 806 58 474 50 41% 50% 40 to 60%
25% B + 75% Y 703 16 239 46 66% 75% 65 to 85%
100% Y 469 29 8 2 98% 100% >90%
proximated our criterion for S. cerevisiae ATP reten-
tion. Total pg ATP mL-1 were measured per ASTM
As noted above, floc formation confounds size-
D7687. Filtrate pg ATP mL-1 were obtained by per-
separation, filtration strategies to differentiate fungal
forming D687 on samples that had been filtered
from bacterial contamination in fluid samples. Conse-
through test media. Percent retention was computed as:
quently, the next step was to identify a surfactant that
would effectively disperse flocs without lysing bacterial
[ATP] Total – [ATP] Filtrate or fungal cells. Experiments with Triton X-100 at end-
X 100 = % Retention (1) dilutions of 0.1 to 0.8% (v/v) indicated that at all of the
[ATP] Total concentrations tested, the surfactant lysed bacteria (data
not shown). The proprietary surfactant CB-D was would be equal to that in the original sample (undiffer-
tested at concentrations of 0.045 to 1.8% (v/v). At entiated total).
0.45% the product effectively dispersed bacterial flocs
without lysing a significant number of cells (Table 4). At 1.8% and 0.9% (v/v) CB-D caused significant cell
lysis. However at 0.45% (v/v) CB-D effectively dis-
Table 4. Effect of surfactant CB-D on cellular ATP aggregated flocs without lysing significant percentages
recovery and bacterial floc disaggregation. of the bacterial population (Table 4). Having opti-
CB-D pg ATPmL
mized the protocol using individual bacterial and fungal
Treatment cultures, the next step will be to further validate the
(% v/v) Undifferentiated Differential Method
Total 5.0 m <5.0 m Sum
Total -Sum method in the same range of fluids as listed apropos of
0 12,000269 2,500690 8,000 10,500 1,500 the dormant cell protocol.
1.8 9,400 2,100320 7,60035 9,700 (300)
0.9 11,000270 74033 9,000440 9,740 1,260
0.45 10,700320 890   9800470 10,690 10
0.045 12,600180 2,3001,220 9,300200 11,600 1,000
5. Conclusions
In this paper we have presented two methods that ex-
tend the usefulness and applicability of ASTM methods
4. Discussion D7687 [1] and E2694 [7]. We have demonstrated 30
min pre-incubation period in TSB is sufficient to ensure
4.1 Detecting Dormant Cells that dormant cells have become reactivated, but have
The results that we obtained, corroborated those previ- not yet begun to proliferate. We have also demonstrat-
ously reported by Min et al.[4], in that we found TSB ed that we can successfully differentiate between bacte-
and BHI to be satisfactory recovery media and maximal rial and fungal contamination in fluids that are likely to
germination rates occured within 15 min after placing be contaminated with bacteria, fungi or both.
endospore suspensions at 37ºC. However, we opted to
use a 30min germination period. We made this 6. References
decision based on the hypothesis that dormant cells
other than endospores might require more time to [1] ASTM Method D7687, 2011. Method for
become revitalized in the recovery medium. During the Measurement of Cellular Adenosine Triphosphate in
current investigation, >90% of the [ATP] concentration Fuel, Fuel/Water Mixtures, and Fuel-Associated Water
increase occured with 10min. We therefore anticipate with Sample Concentration by Filtration. ASTM Inter-
that the threefold increase in incubation time (double national, West Conshohocken, DOI: 10.1520/D7687-
the time used by Min and his team [4]) should provide 11, online at www.astm.org.
a sufficint recovery period for most – if not all –
dormant microbes in industial process fluid samples. [2] Passman, F. J., 2009. Using Adenosine Triphos-
During the next phase of our research, we will test this phate to quantify bioburdens in various liquid fuels. In:
theory using fuel, fuel-associated water, MWF and Bartz, W.J. Ed. 7th International Fuels Colloquium.
oilfield water samples. Technische Akademie Esslingen, Ostfildern, Germany,
on CD.
4.2 Differentiating between Bacteria and Fungi
Earlier reports [5,6] have confirmed that [ATP] covary [3] Passman, F. J., Kauffman, R. E., Munson, G. L.
strongly with culture data. However, although 2011. The Use of Non-Chemical Technologies to Con-
differentiaition between bacterial and fungal ATP is trol Microbial Contamination in Aviation Fuels. In:
important for the selection of appropriate microbicides, Bartz, W. J. Ed. 8th International Fuels Colloquium.
it has not been previously reported. In a 1981 Technische Akademie Esslingen, Ostfildern, Germany.
American Society of Microbiology (ASM) annual On CD.
meeting presentation, Passman demonstrated that size-
differential filtration could be used to separate fungi [4] Min, J., Lee, J.Y., Deininger, R. A., 2006. Simple
from bacteria for testing catalase activity in MWF. and Rapid Method for Detection of Bacterial Spores in
However, Passman used filamentous fungi in that in- Powder Useful for First Responders. J. Environ.
vestigation. During the preliminary phases of the cur- Health, 68(8): 34-37.
rent study, bacterial floc formation was determined to
be a significant factor, contributing to the retention of [5] Passman, F. J., Egger, G. II, Hallahan, S., Skinner,
bacteria on 5.0 µm filters. Moreover, we determined B. and DeSchepper, M., 2009. Real-time Testing of
that both surfactant chemistry and concentration affect- Bioburdens in Metalworking Fluids Using Adenosine
ed bacterial ATP recoveries. At concentrations suffi- Triphosphate. Tribol. Trans. 52(6): 288-292.
cient to disaggregate flocs, Triton X-100 cause signifi-
cant cell lysis as evidenced by significantly reduced [6] Koch, T., Passman, F. J. and Rabenstein, A., 2013.
ATP recoveries in 5.0µm filtrates. Intact, individual Comparative Study of Microbiological Monitoring of
bacteria would be retained by the 0.7µm filter, and the Water-Miscible Metalworking Fluids. Tribol. Trans. In
total of [ATP] in the 5.0µm and 0.7µm filter extracts Press.
[7] ASTM Method E2694, 2011. ASTM International,
West Conshohocken, DOI: 10.1520/E2694-11, online
at www.astm.org.

Acknowledgements
We take this opportunity to thank Angela Waugh for
her technical assistance during the research effort,
Derek Dunn for his assistance in project management
and to Pat Whalen for supporting the project.

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