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BIOCHEMISTRY-AN OVERVIEW
Biochemistry is the study of the chemical substances found in living organisms and the
chemical interactions of these substances with each other.
It is also a field in which new discoveries are made almost daily about how cells
manufacture the molecules needed for life and how chemical reactions by which life is
maintained occur.
A biochemical substance is a chemical substance found within a living organisms.
Two Groups:
Bioinorganic Substances: Do not contain carbon; Water (70%),
Inorganic salts (5%) /two-thirds of the mass
Bioorganic Substances: Contain carbon; Proteins (15%), Lipids (8%),
Carbohydrates (2%), Nucleic acids (2%) /one-fourth of body mass
These substances do not have life of themselves until it is gathered together in
a cell.
More than half of all organic carbon atoms are found in the carbohydrate
materials of plants.
Carbohydrates in the form of cotton and linen are used as clothing.
Carbohydrates in the form of wood are used for shelter and heating and in
making paper.
Carbohydrates are the most abundant class of bioorganic molecules on planet earth
although it is relatively low in the human body.
75% by mass of dry plant materials are constituted by carbohydrates.
Green (chlorophyll-containing) plants produce carbohydrates via photosynthesis.
Carbon dioxide from the air and water from the soil are the reactants, and
sunlight absorbed by chlorophyll is the energy source.
Classification of Carbohydrates
Bromochloroiodomethane Glyceraldehyde
Carbohydrates
Enantiomers Diastereomers
(a) (b)
Molecules that contain more than one chiral center can also exist in
diastereomeric as well as enantiomeric forms.
The fischer projection formulas for the two enantiomers of glyceraldehydes are:
L- Glyceraldehyde D- Glyceraldehyde
The enantiomer with chiral center –OH group on the right in the fischer formula
is by definition the right-handed isomer (D-glyceraldehyde).
The enantiomer with the chiral center –OH group on the left in the Fischer
projection formula by definition the left-handed isomer (L-glyceraldehyde).
(2,3,4-trihydroxybutanal), a monosaccharide with four carbons and two chiral centers.
First enantiomeric pair: Both chiral-center –OH groups are on the same side of
the Fischer projection formula.
Second enantiomeric pair: The chiral center –OH groups are on opposite sides of
the Fischer projection formula.
The carbon chain is numbered starting at the carbonyl group end of the molecule, and
the highest-numbered chiral center is used to determine D or L configuration.
A B C D
The D,L nomenclature gives the configuration (handedness) only at the highest-
numbered chiral center.
A & C, A & D, B & C, B & D are diastereomers/ not mirror images.
These four pairs are epimers; Epimers are diastereomers whose molecules differ
only in the configuration at one chiral center.
Properties of Enantiomers
Diastereomers differ in most chemical and physical properties.
Different boiling points and melting points.
Enantiomers have nearly identical boiling points and melting points.
Carbohydrates
Enantiomers exhibit different properties in only two areas: (1) their interaction with
plane-polarized and (2) their interaction with other chiral substances.
Classification of Monosaccharides
There is no limit to the number of carbon atoms that can be present in a
monosaccharide.
Only monosaccharides with three to seven carbon atoms are commonly found in nature.
Three-carbon: triose
Four-carbon: tetroses
Five-carbon: pentoses
Six-carbon: hexoses
Monosaccharides are classified as aldoses or ketoses on the basis of type of carbonyl
group present.
An aldose is a monosaccharide that contains an aldehyde functional group;
Aldoses are polyhydroxy aldehydes.
A ketose is a monosaccharide that contains a ketone functional group; Ketoses
are polyhydroxy ketones.
Monosaccharides are also often called sugars thus they have sweet taste; It is a general
designation for either a mono- or disaccharide.
Trioses are the smallest monosaccharides that can exist in two forms:
1. An aldose (glyceraldehydes)
TRIOSE
(One Chiral Center)
TETROSES
(Two Chiral Center)
Pentoses
(Three Chiral Center)
Hexoses
(Four Chiral Center)
Carbohydrates
TRIOSE
TETROSE
PENTOSES
HEXOSES
D-Glucose
It is the most abundant in nature and most important from a human nutritional
standpoint.
Carbohydrates
D-Galactose
D-galactose and D-glucose differ only in the configuration of the –OH group and
–H group on the carbon 4.
D-Fructose
The most important ketohexose.
Also known as levulose and fruit sugar.
Naturally occurring D-Fructose rotate plane-polarized light to the left.
The sweetest-tasting of all sugars.
Found in many fruits and is present in honey in equal amounts with glucose.
Sometimes used as dietary sugar because less is needed for the same amount of
sweetness.
Third to sixth carbon structures are identical of those D-Glucose.
Differ only in carbon 1 and 2 due to different functional groups.
D-Ribose
It is a pentose; If carbon 3 and its groups were eliminated from the structure of
D-Glucose, the remaining structure would be that of D-Ribose.
Carbohydrates
Cyclic of Monosaccharides
(1) Projection formula: (2) To the right rearrangement: (3) Counterclockwise C-5
(6)
Fructose and other ketoses with a sufficient number of carbon atoms also cyclize.
Carbohydrates
Galactose, like glucose, forms a six-membered ring, but both D-fructose and D-ribose
form a five membered ring.
D-Fructose cyclization involves carbon 2 (the keto group) and carbon 5, which
results in two CH2Oh groups being outside the ring (Carbons 1 and 6).
D-Ribose cyclization involves carbon 1 (the aldehyde group) and carbon 4.
A cyclic monosaccharide containing a six-atom ring is called pyranose, and one
containing a five-atom ring is called furanose.
α-D-glucose is a α-D-glucopyranose
α-D-fructose is a α-D-fructopyranose
When alpha and beta configuration does not matter, the –OH group on carbon 1 is
placed in a horizontal position, and a wavy line is used as the bond that connects it to
the ring.
Reactions of Monosaccharides
Tollen’s and Benedict’s solutions can be used to test for glucose in urine, a
symptom of diabetes.
Benedict’s solution remains blue if glucose is not present.
Formation of a red precipitate indicates the presence of glucose.
Strong oxidizing agents can oxidize both ends of a monosaccharide at the
same time (the carbonyl group and the terminal primary alcohol group) to
produce a dicarboxylic acid; aldaric acids.
Enzymes can oxidize the primary alcohol end of an aldose such as glucose,
without oxidation of the aldehyde group, to produce an alduronic acid.
Carbohydrates