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Phycologia Volume 53 (4), 329–341 Published 12 June 2014

Diversity of freshwater red algae (Rhodophyta) in Malaysia and Indonesia


from morphological and molecular data
EMILY T. JOHNSTON1, PHAIK-EEM LIM2, NURLIAH BUHARI3, EMILY J. KEIL1, M. IQBAL DJAWAD4 AND MORGAN L. VIS1*
1
Department of Environmental and Plant Biology, Ohio University, Athens, OH 45701 USA
2
Institute of Biological Sciences and Institute of Ocean and Earth Sciences (IOES), University of Malaya, 50603 Kuala Lumpur,
Malaysia
3
Mataram University, West Nusa Tenggara, Indonesia
4
Hasanuddin University, Makassar, South Sulawesi, Indonesia

ABSTRACT: Both Malaysia and Indonesia have high biodiversity for a variety of organisms, including freshwater red algae.
The type localities of over a dozen freshwater red algal taxa are located in Malaysia and Indonesia. These species were
described prior to the advent of molecular systematics, and no molecular data were available for specimens from these
two countries. Therefore, the goal of this study was to visit type and other locales in Malaysia and Indonesia to recollect
freshwater red algal taxa for both morphological and molecular studies. A total of 11 previously published species were
identified, with eight taxa belonging to the Batrachospermales, and one each in the Compsopogonales (Compsopogon
caeruleus), Ceramiales (Caloglossa beccarii) and Thoreales (Nemalionopsis shawii). The rbcL gene provided numerous
insights including two new species, Batrachospermum phangii sp. nov. from Malaysia and Kumanoa celebes sp. nov. from
Indonesia. The placement of Batrachospermum cylindrocellulare in section Aristata rather than section Batrachospermum
was clarified. Specimens from Malaysia identified as Sirodotia delicatula were distantly related to specimens from South
America, suggesting a cryptic species in South America. Likewise, Balliopsis prieurii from Malaysia was distantly related
to Balliopsis prieurii from South America. A gametophyte specimen and numerous chantransia stage specimens were
conspecific with Batrachospermum macrosporum from South America, and this is a new record of this taxon in Malaysia.
Chantransia stage sporophyte specimens from Indonesia had a similar sequence to Sheathia arcuata from Hawaii. The
sequence placement of N. shawii from Indonesia points to the need for further systematic research on this genus.
Although Kumanoa gibberosa was not recollected at the type location in Malaysia, it was found in Indonesia; likewise, the
type locality in Indonesia did not yield S. delicatula but this species was present in Malaysia. Given the previously
described diversity, the two new taxa proposed in this study and the insights gained from the present molecular data, we
suggest that future focus on freshwater red algae from Southeast Asia will yield considerable knowledge of the flora of the
region and freshwater red algal diversity in general.
KEY WORDS: Balliopsis, Batrachospermum, Caloglossa, Compsopogon, Kumanoa, LSU rDNA, Nemalionopsis, rbcL,
Sheathia, Sirodotia

INTRODUCTION Freshwater red algae are reported from Africa, Asia,


Australasia, Europe, North America and South America, as
Most rhodophyte taxa inhabit marine environments, with well as Pacific, Indian and Caribbean oceanic islands
freshwater red algae accounting for only ~ 3–5% of the (Kumano 2002). Despite historical and modern collections,
species diversity (Sheath 1984). Nevertheless, freshwater red we are far from understanding their true diversity and
algae are taxonomically diverse, with members in nine orders biogeography. For example, Kumanoa has been the subject
(Kumano 2002). Three orders, the Batrachospermales, of intense morphological and molecular study recently,
yielding numerous new species and confirming the majority
Thoreales and Balbianiales, are exclusively freshwater and
of the previously described species (Necchi & Vis 2012; Vis et
contain the bulk of the species diversity. However, there are
al. 2012). Many previously presumed cosmopolitan taxa
many taxa scattered in primarily marine orders, such as have restricted distributions, e.g. Batrachospermum gelati-
Caloglossa in the Ceramiales. Many of these species, nosum (Linnaeus) De Candolle (Vis & Entwisle 2000) and
including Caloglossa beccarii (Zanardini) De Toni, have Kumanoa ambigua (Montagne) Entwisle, M.L. Vis, W.B.
been reported from both brackish and freshwater (Kamiya et Chiasson, Necchi & A.R. Sherwood (Vis et al. 2012). Other
al. 2003). In freshwater, many of the species within the taxa, such as Compsopogon caeruleus, appear to be truly
Batrachospermales occur only in flowing water, with a few cosmopolitan, with little genetic variation among specimens
reported from lentic waters (Sheath & Hambrook 1990). from Asia, Australia, Europe, North and South America and
Other taxa, such as Compsopogon caeruleus (Balbis ex C. Pacific Islands (Carlile & Sherwood 2013; Necchi et al. 2013).
Agardh) Montagne, Compsopogonales, are often reported There are regions that may have high degrees of
from a variety of habitats with little flow (Sheath 1984). endemism, e.g. the numerous Australasian endemic taxa
(Vis & Entwisle 2000). Molecular data suggest many of these
* Corresponding author (vis-chia@ohio.edu). endemics are phylogenetically related. Conversely, Sirodotia
DOI: 10.2216/13-223.1 suecica Kylin diverged from its closest known relatives
Ó 2014 International Phycological Society following a long-distance dispersal event (Vis & Entwisle

329
330 Phycologia, Vol. 53 (4)

2000; Entwisle et al. 2009; Lam et al. 2012). Malaysia is one Development of Marine, Coast and Small Islands, Hasa-
of the most studied countries for freshwater red algal nuddin University, Indonesia. For samples collected from
diversity and has many endemic taxa (Table S1; Kumano Malaysia, two additional herbarium sheets were made when
2002 and the references therein). Additionally, Indonesia, the enough material was available, and these were deposited in
Philippines and Thailand also have many type locations the University of Malaya Seaweeds and Seagrasses Herbar-
(Table S1 for Indonesian type locations; Skuja 1934, 1938; ium (KLU) and the National Herbarium of Malaysia at the
Kumano & Liao 1987; Traichaiyaporn et al. 2008). Forest Research Institute Malaysia (KEP) (Table S2).
Therefore, Southeast Asia may be a hot spot for freshwater Holotype specimens were prepared from the BHO material
red algal diversity, just as the region is known for vascular and deposited at the University of Michigan, USA (MICH).
plant biodiversity (Mutke & Barthlott 2005). For morphological identification, preserved specimens
The history of freshwater red algal studies in Indonesia were examined in a BX-40 compound microscope (Olympus
and Malaysia is sparse, punctuated by brief periods of America Inc., Lake Success, New York, USA). Diagnostic
concentrated research. The first reported freshwater red alga morphological features observed in the microscope were
was Caloglossa beccarii described from Sarawak, Malaysia, photographed and measured using an attached SC20 camera
on the island of Borneo (Zanardini 1872). A number of (Olympus America Inc.) and the software MicroSuiteTM
reports followed years later from Indonesia: Thorea zollin- Special Edition Five (Olympus America Inc.). All specimens
geri Schmitz from Java (Schmitz 1892) and two species in the were identified to the lowest possible taxonomic unit using
Batrachospermales, Batrachospermum lochmodes Skuja and numerous relevant literature sources but in particular
Sirodotia delicatula Skuja (Skuja 1938). To date, no further Kumano (2002), Kamiya et al. (2003) and Necchi & Vis
investigations of the freshwater red algal flora of Indonesia (2012).
have been published. However, 12 new species from the For DNA extraction, tissue dried in silica was either
genera Thorea, Balliopsis, Batrachospermum and Kumanoa homogenized by grinding in liquid nitrogen with a mortar
have been described from Malaysia (Table S1). In total, 27 and pestle or by pulverizing with beads in the TissuelyserLT
taxa have been reported from these two countries, with many (Qiagen Inc., Valencia, California, USA). DNA was
(13) potential endemics, known from only a few locations or extracted using the NucleoSpin Plant Genomic DNA kit
the type localities (Table S1). There are only a few taxa that (Macherey-Nagel, Bethlehem, Pennsylvania, USA) following
appear to have a wider distribution, such as S. delicatula, the manufacturer’s protocol, with the following modifica-
having been recorded numerous times from South America tion: the cell lysis step was increased to 30 min. A portion
(Necchi et al. 2007; Lam et al. 2012) and C. beccarii reported (1282 bp or 1340 bp) of the chloroplast ribulose-1,5-
from India, Northern Australia, the Panama Canal, Singa- bisphosphate carboxylase/oxygenase large subunit gene
(rbcL) was amplified using the primers listed in Table S3.
pore, Thailand and Vietnam (Lin et al. 2001; Kumano 2002;
The following three cocktails were used to obtain polymerase
Kamiya et al. 2003).
chain reaction (PCR) product: AmpliTaq Gold (Applied
For the past 20 yr there has not been a focus on Malaysian
Biosystems, Carlsbad, California, USA), with 11 lL dH2O,
freshwater red algae, and the time period is much longer for
1.5 lL of each primer, 15 lL AmpliTaq Gold master mix
Indonesia. The aim of this study was to visit as many type
and 1 lL template DNA; Ex Taqt DNA polymerase
localities as possible in Malaysia and Indonesia, along with
(Clontech Laboratories, Inc., Mountain View, California,
additional sites, to collect both previously described and
USA), with 36.75 lL dH2O, 1.5 lL of each primer, 4 lL
potentially unknown taxa. Both morphological features and
dNTP, 5 lL 103 buffer, 0.25 lL Ex Taq and 1 lL template
molecular data, primarily the rbcL gene, were used to
DNA; or Illustrae PuReTaq Ready to Go PCR Beads (GE
characterize the taxa, determine their phylogenetic affinities
Healthcare, Piscataway, New Jersey, USA), with 19 lL
and make biogeographic inferences. dH2O, 2 lL of each primer and 2 lL template DNA.
Amplification was conducted in a 2720 Thermocycler
(Applied Biosystems) using the following cycle: 958C for 1
MATERIAL AND METHODS min, 35 cycles of 938C for 30 s, 508C for 30 s, 688C for 1 min,
a final hold for 10 min at 728C. All products were visualized
Sites in Sulawesi and Java, Indonesia, as well as peninsular using gel electrophoresis. For Caloglossa specimens, multiple
Malaysia, were investigated (Fig. S1). Thirty-four freshwater products were observed for a single reaction, and the band
red algal samples (macroscopically identified) were collected with the appropriate size was excised from the gel and
(Table S2). Water temperature, pH and conductivity were cleaned using the GelElute Extraction Kit (5Prime, Gai-
recorded at each site using handheld meters (Oakton thersburg, Maryland, USA) following the kit protocol, with
Waterproof ECTestr low and Waterproof pH Testr, Oakton one modification: the drying step was increased to 25–30
Instruments, Vernon Hills, Illinois, USA) (Table S2). Visible min. All other PCR products were purified using the
epiphytes were removed, and the sample was divided into UltraCleane PCR Clean-up DNA Purification Kit (Mo
four or six portions. One portion was dried in silica desiccant Bio Laboratories, Carlsbad, California, USA). The follow-
for DNA extraction, one was placed in 95% ethanol for ing modifications were made to the kit protocol: the second
morphological examination and the remaining portions were centrifuge cycle was increased to 60 s and, for reactions that
pressed as herbarium voucher specimens. For samples produced a faint PCR band, 30 lL instead of 50 lL
collected in Indonesia, one herbarium sheet was deposited extraction buffer was added in the final step. To further
at the Floyd Bartley Herbarium at Ohio University, USA confirm the identification of the Caloglossa specimens, a
(BHO), and the second was deposited in Research and portion of the 26S rDNA gene (LSU) was PCR amplified
Johnston et al.: Freshwater red algae in Indonesia and Malaysia 331

using the primers T05 (5 0 -GCAACGGGCAAAGG- (Kützing) G.W. Saunders & Necchi; and two distinct
GAATCC-3 0 ) and T15 (5 0 -TGATAGGAAGAGCCGA- chantransia stage sporophytes (analogous to the tetraspor-
CATCGA-3 0 ) from Harper & Saunders (2001) and ophyte phase of marine red algae). Batrachospermum
AmpliTaq Gold cocktail and PCR and purification proto- beraense Kumano was collected from the type locality,
cols previously described. Tasek Bera (Lake Bera), in Malaysia and was a member of
The purified PCR products were submitted to the Ohio section Aristata having long carpogonial branches and
University Genomics Facility for sequencing using an ABI short carpogonia compared with other species of the
3100 Genetic Analyzer (Applied Biosystems), using both section (Figs 1–3). Batrachospermum cylindrocellulare
the PCR primers and internal primers (Table S3) to obtain Kumano was also collected from its type locality, Tasek
the sequence data for both the sense and antisense strands. Bera, in Malaysia. This taxon had spherical carpospor-
Contigs were assembled and edited using either Geneious ophytes in the outer part of the whorl and carpogonia on
Pro version 5.5.6 (Biomatters, Ltd., New Zealand, Drum- undifferentiated branches but differed from other species
mond et al. 2011) or Sequenchere 4.10.1 (Gene Codes by having cylindrical fascicle cells (Figs 4–6). Specimens of
Corp., Ann Arbor, Michigan, USA). All sequence data B. macrosporum were intermixed with B. beraense and had
were compared with previously published sequences using a a similar whorl appearance but differed in the shape of the
BLASTn search in GenBank (Benson et al. 2011). carpogonium and the much larger carposporangia (Figs 7–
For the Batrachospermales and Thoreales specimens, 9). Kumanoa gibberosa (Kumano) Necchi & M.L. Vis was
rbcL sequence data were combined with previously distinct with highly reduced whorls, large carposporo-
published sequences of closely related taxa within those phytes and carpogonia on a compacted, coiled branch
orders available through GenBank. The Balbianiales (Figs 10, 11). This species, originally described from
[Balbiania investiens (Lenormand ex Kützing) Sirodot Malaysia, was reported for the first time in Indonesia
KF944666 and Rhododraparnaldia oregonica Sheath, (Tables S1, S2). Diminutive thalli of K. tortuosa (Kumano)
Whittick & K.M. Cole AF029156] was used as an E.T. Johnston, P.-E. Lim & M.L. Vis comb. nov., were
outgroup for phylogenetic analyses. Models of sequence collected intermingled with the chantransia stage sporo-
evolution were examined using jMODELTEST (Guindon phytes of B. macrosporum growing on vascular plants in
& Gascuel 2003; Posada 2008). Phylogenetic inferences their type locality, Tasek Bera, Malaysia. These K.
were made using Bayesian inference (BI) with MrBayes tortuosa specimens had smaller whorl size than the
version 3.2 (Ronquist et al. 2012) and maximum likeli- protologue but the carposporophyte and carpogonial
hood (ML) analysis using the RAxML 7.2.6 (Stamatakis characteristics were similar (Figs 12, 13). Sirodotia
2006; Stamatakis et al. 2008). Both BI and ML analyses delicatula, originally described from Indonesia, was
collected in Malaysia and showed the characteristic whorl
were conducted using a general time reversible model with
morphology, gonimoblast filaments arising from the
a gamma distribution, as suggested by the jMODELTEST
protuberant side of the carpogonium and creeping,
results. The BI analysis was run for 5,000,000 generations,
indeterminate carposporophytes (Figs 14–16). The small
until the standard deviation of the split frequencies was
crimson thalli of Balliopsis prieurii were collected at
less than 0.01 and the first 10% of sampled trees were
Ampang Park in the city of Kuala Lumpur at both the
discarded as burnin. The ML analysis was conducted
inflow and outflow of a reservoir. This taxon was
using the rapid bootstrapping and best tree search
distinguished from the only other species described in
algorithm (-f a) for 1000 repetitions.
the genus, Balliopsis pinnulata (Kumano) G.W. Saunders
& Necchi, by having branched branchlets and relatively
large monosporangia (Figs 17, 18). Two distinct chan-
RESULTS transia stage sporophytes, distinguished by the size of the
vegetative cells and monosporangia, were collected. The
Eight samples were collected from Indonesia and 26 chantransia stage of B. macrosporum, having larger cells
samples were collected from Malaysia. Two Malaysian and monosporangia, was collected from Malaysia (Fig.
samples (MR-24 and MR-26) contained two morphologi- 19). The sporophyte specimens from Indonesia with
cally distinct entities when viewed in the stereomicroscope, smaller vegetative cells and monosporangia were not
bringing the total for this country to 28 red macroalgae assigned to a taxonomic entity because sporophytes with
(Table S2). Eleven species were readily identified, with eight this morphology have been linked to numerous species in
taxa belonging to the Batrachospermales and one each in the Batrachospermales and Thoreales using molecular
the Compsopogonales, Ceramiales and Thoreales (Figs 1– data (Fig. 20).
26). One specimen from Malaysia (MR-15) was identified as A single member of each order, Compsopogonales,
Batrachospermum section Turfosa but no existing species Ceramiales and Thoreales, was identified. The monospecific
epithet could be assigned (Figs 27–31). Likewise, two Compsopogon caeruleus (Compsopogonales) was collected
specimens (IR-27 and IR-28) had features that placed them from both Malaysia and Indonesia (Table S2). This taxon
in Kumanoa but could not be ascribed to an existing species had a typical smooth thallus appearance in most locations
using the key in Necchi & Vis (2012) (Figs 32–38). but in one location (MR-16) the thalli had spines that had
From the Batrachospermales, there were three Batra- been attributed to Compsopogon aeruginosus, now a syno-
chospermum species, B. beraense, B. cylindrocellulare, and nym of C. caeruleus (Figs 21, 22). Caloglossa beccarii
B. macrosporum; two Kumanoa species, K. gibberosa and (Ceramiales) was found in four locations with low conduc-
K. tortuosa; Sirodotia delicatula; Balliopsis prieurii tivity ( 50 lS/cm2) (Fig. 23; Table S2). Nemalionopsis
332 Phycologia, Vol. 53 (4)

Figs 1–13. Morphological features of Batrachospermum beraense, B. cylindrocellulare, B. macrosporum, Kumanoa gibberosa and K. tortuosa.
Figs 1–3. Batrachospermum beraense MR-24 BHO voucher.
Fig. 1. Distinct barrel-shaped whorls with a peripheral small spherical carposporophyte (arrowhead). Scale bar ¼ 300 lm.
Fig. 2. Carpogonium with a long stalked trichogyne (arrowhead) at the apex of a long carpogonial branch (double arrowhead). Scale bar
¼ 10 lm.
Fig. 3. Compact carposporophyte with obovoid carposporangia (arrowheads) at the tips of the gonimoblast filaments. Scale bar ¼ 20 lm.
Figs 4–6. Batrachospermum cylindrocellulare MR-25 BHO voucher.
Johnston et al.: Freshwater red algae in Indonesia and Malaysia 333

shawii Skuja (Thoreales) was recorded from one location in chospermum macrosporum chantransia stage sporophytes
Indonesia (Table S2). Morphological characteristics ob- were identical to the B. macrosporum sequences for
served included a thick medulla with compact assimilatory specimens from Bolivia and Brazil (AY423417 and
filaments, carpogonia with thin long trichogynes and AY423416, respectively) and 1 bp different from French
putative spermatangia (Figs 24–26). Guiana specimens (AY423413 and AY423414). The se-
Within the 28 samples from Malaysia, nine distinct taxa quence of the chantransia stage sporophytes from Indonesia
were identified (Table S2). Batrachospermum macrosporum was 2 bp different from Sheathia arcuata (Kylin) Salomaki &
was the most abundant, with the chantransia stage M.L. Vis (as Batrachospermum arcuatum) EF116873 from
sporophyte collected in 12 locations and the gametophyte Hawaii. The Nemalionopsis shawii specimen differed by 3 bp
in one location for a total of 13 observations. Caloglossa from a previously published sequence DQ296122 identified
beccarii was reported from four locations, Compsopogon as Nemalionopsis tortuosa Yoneda & Yagi. As well, the
caeruleus from three and Balliopsis prieurii from two. All Compsopogon caeruleus sequence for two of the specimens
other taxa were collected in one location: Sirodotia was identical to C. caeruleus JX028157 and MR-16 was only
delicatula, Batrachospermum beraense, Batrachospermum 1 bp different. All other sequences were at least 2% different
cylindrocellulare, Batrachospermum phangii sp. nov. and from other sequences in GenBank. There were no rbcL
Kumanoa tortuosa comb. nov. sequence data available for Caloglossa beccarii. Therefore, a
Only eight samples were collected in Indonesia but five 748 bp portion of the LSU gene was sequenced and
distinct taxa were identified. Compsopogon caeruleus, Kuma- compared with the closely related taxa C. beccarii
noa celebes sp. nov. and chantransia stage sporophyte were (AF522207) and Caloglossa ogasawaraensis Okamura
each collected in two locations, while Kumanoa gibberosa (AB669608). Our specimens (MR-07 and MR-09) differed
and Nemalionopsis shawii were collected from single locales by 1 bp and were 99.5% similar (4–5 bp) to C. beccarii and
(Table S2). Kumanoa celebes sp. nov. and N. shawii were from only 98.8% similar (9–10 bp) to C. ogasawaraensis.
the island of Sulawesi, and the other specimens were from A phylogeny was produced from ML and BI analyses
Java. because many of the rbcL sequences of batrachospermalean
Sequence data of the rbcL gene were obtained for as many taxa and Nemalionopsis (Thoreales) differed from previously
specimens as possible (Table S2). For Batrachospermum published data. The tree topologies were similar, and only
macrosporum chantransia stage sporophytes, the rbcL the ML tree was shown with bootstrap values and BI
sequences for six specimens were identical. The sequence posterior probabilities (Fig. 39). The genus Batrachosper-
data for the two sporophytes from Indonesia were identical mum was polyphyletic, with sections being variously related
to each other and differed from those of B. macrosporum. to other genera in the Batrachospermales. Batrachospermum
Likewise, the two sequences from Caloglossa beccarii cylindrocellulare was in a well-supported clade with Batra-
specimens were identical to each other. Among the three chospermum cayennense Montagne ex Kützing specimens
Compsopogon caeruleus specimens, there was only 1 bp from section Aristata (Fig. 39). Batrachospermum phangii sp.
difference between MR-16 and the other two. Single nov. was in a well-supported clade with specimens of
sequences were obtained for Batrachospermum cylindrocellu- Batrachospermum turfosum Bory from section Turfosa. The
lare, Batrachospermum phangii sp. nov., Kumanoa gibberosa, Sirodotia delicatula specimen was well supported as part of
Kumanoa celebes sp. nov., Sirodotia delicatula, Balliopsis the Sirodotia clade but not monophyletic with a previously
prieurii and Nemalionopsis shawii. Unfortunately, after published sequence of S. delicatula from South America.
multiple attempts, no molecular data could be acquired for Balliopsis prieurii was on a long branch, sister to B. prieurii
Batrachospermum beraense and Kumanoa tortuosa. from South America but with low support in either analysis.
BLAST searches of GenBank showed some of the newly Kumanoa gibberosa was placed within the clade of species
produced sequences to be identical or near identical to from this genus but was not closely related to other taxa.
previously published data. The sequences from the Batra- Likewise, Kumanoa celebes sp. nov. was within the Kumanoa

Fig. 4. Distinct whorls with one or two peripheral small spherical carposporophytes (arrowheads). Scale bar ¼ 100 lm.
Fig. 5. Separate whorls of primary fascicles with sparse branching composed of cylindrical cells. Scale bar ¼ 100 lm.
Fig. 6. Carpogonium with a clavata trichogyne (arrowhead) and attached spermatium (double arrowhead) at the tip of a carpogonial
branch obscured by involucral filaments (arrow). Scale bar ¼ 10 lm.
Figs 7–9. Batrachospermum macrosporum MR-24 BHO voucher.
Fig. 7. Large distinct barrel-shaped whorls with small spherical carposporophytes (arrowheads). Scale bar ¼ 300 lm.
Fig. 8. Carpogonium with obovoidal trichogyne (arrow). Scale bar ¼ 20 lm.
Fig. 9. Compact carposporophyte with large obovoid carposporangia (arrowheads) at the tips of gonimoblast filaments. Scale bar ¼ 20 lm.
Figs 10, 11. Kumanoa gibberosa IR-30 BHO voucher.
Fig. 10. Elongate, obconic and reduced whorls with large dense carposporophyte (arrowhead) that is higher than the whorl. Scale bar ¼
100 lm.
Fig. 11. Carpogonium with lanceolate bent trichogyne (arrowhead) at the tip of a highly compacted coiled carpogonial branch (double
arrowhead). Scale bar ¼ 10 lm.
Figs 12, 13. Kumanoa tortuosa comb. nov. MR-26 BHO voucher.
Fig. 12. Indistinct whorls with large axial carposporophyte (arrowhead). Scale bar ¼ 50 lm.
Fig. 13. Carpogonium with club-shaped trichogyne (arrowhead) on a coiled carpogonial branch forming a rosette (double arrowhead).
Scale bar ¼ 10 lm.
334 Phycologia, Vol. 53 (4)

Figs 14–26. Morphological features of Sirodotia delicatula, Balliopsis prieurii, Batrachospermum macrosporum chantransia stage sporophyte
and chantransia stage sporophyte (identified as Sheathia arcuata by rbcL sequence data), Compsopogon caeruleus, Caloglossa beccarii and
Nemalionopsis shawii.
Figs. 14–16. Sirodotia delicatula MR-08 BHO voucher.
Fig. 14. Well-developed obconic whorls that are confluent due to secondary filament development. Scale bar ¼ 150 lm.
Fig. 15. Carpogonium with a stalked cylindrical trichogyne (arrowhead), attached spermatium (double arrowhead) and gonimoblast
filaments initiating from the protuberant side of the carpogonial base (arrow). Scale bar ¼ 10 lm.
Fig. 16. Carposporangia (arrowheads) terminal on lateral branches of a prostrate gonimoblast (double arrowhead). Scale bar ¼ 10 lm.
Johnston et al.: Freshwater red algae in Indonesia and Malaysia 335

clade and within a well-supported clade with numerous other TYPE LOCALITY: 03839 0 18.48 00 N, 101819 0 11.04 00 E, drainage ditch
species, some of which are endemic to Australasia and others outside peat swamp alongside road, North Selangor, Malaysia.
that are more cosmopolitan (Fig. 39). The chantransia stage
ETYMOLOGY: This species is named in honour of Dr Siew-Moi
sporophytes from Malaysia that were identified morpholog-
Phang for her pioneering work and significant contributions to algal
ically as Batrachospermum macrosporum were confirmed as research in Malaysia.
this species being within a clade of sequences from this
taxon. The chantransia stage sporophyte from Indonesia
that could not be placed with a taxon name based on Kumanoa celebes E.T. Johnston, N. Buhari & M.L. Vis sp.
morphology was within a clade of Sheathia arcuata nov.
sequences. Finally, Nemalionopsis shawii was sister to Figs 32–38
Nemalionopsis tortuosa from Taiwan and not closely related
to previously published sequences of N. tortuosa (syn. N.
shawii forma caroliniana) from North American and Hawaii DESCRIPTION: Plants moderately mucilaginous, delicate; branching
(Fig. 39). irregular, frequent near base but less frequent in upper part of thallus,
5.5–8.5 cm high, 425–575 lm in diameter. Whorls well developed,
obconic and confluent. Internode 370–400 lm. Pericentral cells ovoid
Taxonomic proposals with three to four fascicles. Primary fascicles straight, 9 to 13 cell
storeys, proximal cells cylindrical or elliptical, 6.8 lm in diameter, 29–
37.5 lm long, L/D 4–6; distal cells obovoid to pear shaped, 7–8.7 lm
Batrachospermum phangii E.T. Johnston, P.-E. Lim & M.L. in diameter, 11.5–12.8 lm long, L/D 1.5–2; branching di- or
Vis sp. nov. trichotomous. Secondary fascicles abundant covering the whole
Figs 27–31 internode and as long as primary fascicles. Monoecious. Spermatan-
gia spherical to subspherical, abundant, terminal or subterminal on
primary and secondary fascicles, 5.5–7 lm in diameter. Carpogonial
branches curved, arising from the pericentral cell; involucral filaments
DESCRIPTION: Whorls well developed, confluent, dense and
forming a mass of cells near the base of the carpogonium; carpogonia
compressed, 650–750 lm in diameter. Loose cortication around the
40–51 lm, trichogynes club shaped, indistinctly stalked 7.5–11.0 lm in
main axis. Primary fascicles straight, 8–10 cell storeys, cells
diameter. Carposporophytes one per whorl as high as whorl radius,
cylindrical, elliptical with proximal cells often teardrop shaped and
dense and hemispherical, 315–420 lm in diameter and 240–390 lm
7–13 lm in diameter and 27–63 lm long, L/D ¼ 4.2; branching
high; gonimoblast filaments 4–5 cell storeys, cells cylindrical to
dichotomous near the tips but irregular on the lower parts of the
elliptical; carposporangia obovoid, 15–20 lm long, 11–12 lm in
thallus. Secondary fascicles abundant covering the whole internode
and as long as primary fascicles, 8–10 cell storeys. Monoecious. diameter.
Spermatangia spherical to subspherical, abundant, terminal or
subterminal on primary and secondary fascicles, 5.5–6 lm in HOLOTYPE: Deposited at MICH (coll. 09 August 2011); a single
diameter. Carpogonial branches short, three to seven cells, arising specimen pressed and mounted on a herbarium sheet.
from the pericentral cell; involucral filaments clustered near the base
of the carpogonium; carpogonia 34–36 lm, trichogynes club shaped ISOTYPES: BHO specimen number A-1000, a specimen deposited at
to somewhat cylindrical, sometimes with a basal knob, indistinctly the Research and Development of Marine, Coast and Small Islands
stalked 5–7 lm in diameter. Carposporophytes one per whorl, loose, Hasanuddin University, Indonesia.
forming a V shape and can be as high as the whorl, 225–357 lm in
diameter and 250–285 lm high; gonimoblast filaments 5–6 cell TYPE LOCALITY: Sungai Tomehipi near Kolori Village, Bomba
storeys, cells elliptical; carposporangia ovoid, 11–15 lm long, 9–10 Valley, Central Sulawesi, Indonesia, near 1828 0 29.72 00 S,
lm in diameter. 120811 0 20.55 00 E (estimated from Google Maps 2013).

HOLOTYPE: Deposited at MICH (coll. 1 September 2011); a single ETYMOLOGY: This species is named in honour of the island
specimen pressed and mounted on a herbarium sheet. Sulawesi, formally known as Celebes, and in honour of the people
of this region for their amazing generosity, kindness and assistance
ISOTYPES: BHO A-0979, KLU 12149, KEP 216686. with our fieldwork.

Figs 17, 18. Balliopsis prieurii.


Fig. 17. Balliopsis prieurii MR-14 BHO voucher showing the thallus habit and prominent monosporangia (arrowheads). Scale bar ¼ 150 lm.
Fig. 18. Balliopsis prieurii MR-06 BHO voucher showing a thallus apex with dichotomously branched laterals (arrowheads). Scale bar ¼
50 lm.
Fig. 19. Batrachospermum macrosporum chantransia stage sporophyte MR02 BHO voucher with terminal monosporangia (arrowheads).
Scale bar ¼ 30 lm.
Fig. 20. Chantransia stage sporophyte identified as Heterocorticum arcuatum from molecular data IR-31 BHO voucher with terminal
monosporangia (arrowheads). Scale bar ¼ 20 lm.
Figs 21, 22. Compsopogon caeruleus.
Fig. 21. Compsopogon caeruleus IR-33 BHO voucher showing typical thallus habit. Scale bar ¼ 100 lm.
Fig. 22. Compsopogon caeruleus MR-16 BHO voucher showing thallus with spine-like branches. Scale bar ¼ 100 lm.
Fig. 23. Caloglossa beccarii MR03 BHO voucher showing habit of thallus. Scale bar ¼ 300 lm.
Figs 24–26. Nemalionopsis shawii IR-29 BHO voucher.
Fig. 24. Thallus showing thick medulla and compact assimilatory filaments. Scale bar ¼ 200 lm.
Fig. 25. Carpogonium with somewhat swollen base (arrowhead) and long thin trichogyne (double arrowhead). Scale bar ¼ 20 lm.
Fig. 26. Spermatangia (arrowheads) at the tips of assimilatory filaments. Scale bar ¼ 10 lm.
336 Phycologia, Vol. 53 (4)

OTHER LOCATIONS: Sungai Tomehipi near Kolori Village, down-


stream from the population represented by IR-27, Bomba Valley,
Central Sulawesi, Indonesia, near 18 28 0 29.72 0 0 S, 1208 11 0 20.55 0 0 E
(estimated from Google Maps 2013).

Kumanoa tortuosa (Kumano) E.T. Johnston, P.-E. Lim &


M.L. Vis comb. nov.

BASIONYM: Batrachospermum tortuosum S. Kumano. Botanical


Magazine of Tokyo, 91, p. 101 (1978).

This taxon was not transferred previously to the genus


Kumanoa because of lack of characters observed (Necchi &
Vis 2012). After careful morphological examination, we
concluded it was a morphologically distinct taxon, and it had
a twisted carpogonial branch characteristic of Kumanoa.

DISCUSSION

Much of the freshwater red algal diversity was in the order


Batrachospermales. The phylogeny based on the rbcL data
showed the genus Batrachospermum to be paraphyletic, and
this result is congruent with all previous molecular system-
atic studies of this order (Vis et al. 1998; Entwisle et al. 2009).
Researchers have recognized this paraphyly, and to date, the
genera Kumanoa and Sheathia have been described. Work to
describe new genera from detailed studies of Batrachosper-
mum sections is ongoing and outside the scope of this study
(Entwisle et al. 2009; Salomaki et al. 2014). In the present
study, the new sequences for Batrachospermum species have
been placed in sections of Batrachospermum so that they can
be included in future revisions. To that end, B. cylindro-
cellulare when first described was placed in section Batra-
chospermum but the author noted that the early stages of
development of the carpogonial branch allied it to B. Figs 27–31. Batrachospermum phangii sp. nov. MR-15 BHO
cayennense in section Aristata, and he considered it to be voucher.
an intermediate between these sections (Kumano 1993). The Fig. 27. Indistinct confluent whorls with axial triangular
carposporophytes (arrowheads). Scale bar ¼ 300 lm.
molecular data generated in this study of B. cylindrocellulare Fig. 28. Three carpogonia (arrowheads) arising from the same
from the type locality clearly refute its placement in section whorl. Scale bar ¼ 10 lm.
Batrachospermum and confirm its membership in section Fig. 29. Carpogonium with a club-shaped trichogyne (arrow-
Aristata closely allied to B. cayennense. Therefore, when a head) on a carpogonial branch with many involucral filaments
forming a rosette at the base of the carpogonium. Scale bar ¼ 10
new genus is described for that clade, B. cylindrocellulare lm.
should be transferred. Fig. 30. Spermatangia (arrowheads) in clusters at the tips of
Batrachospermum phangii, described here from peninsular fascicles. Scale bar ¼ 10 lm.
Malaysia, represents previously undescribed diversity in Fig. 31. Loose carposporophyte with carposporangia (arrow-
Batrachospermum section Turfosa, from which there were heads) at the tips of many-celled gonimoblast filaments. Scale bar
¼ 20 lm.
previously only five species recognized: B. keratophytum
Bory emend. Sheath, Vis & Cole, B. orthostichum Skuja, B.
periplocum (Skuja) Necchi, B. tapirense Kumano & Phang unlike the presently described species. Batrachospermum
and B. turfosum Bory emend. Sheath, Vis & Cole (Kumano periplocum has well-developed whorls like B. phangii but has
2002). Batrachospermum tapirense has only been reported monosporangia, which was not seen in the new species.
from the type location in Malaysia. The distinguishing Batrachospermum turfosum has well-developed whorls but
character for this species, the carpogonial branch descending differs from B. phangii in that B. turfosum has abortive
from the periaxial cell, was not observed in B. phangii; as carposporophytes and B. phangii has fully developed
well, B. tapirense has reduced whorls with fascicle cells 4–5 carposporophytes that produce carposporangia. In addition,
cell storeys, and B. phangii has well-developed whorls with the proximal fascicle cells in B. turfosum are reported to be
primary fascicles composed of 8–10 cell storeys. Similarly, B. ellipsoidal, and in B. phangii they are more often teardrop
orthostichum and B. keratophytum have reduced whorls [(2–) shaped. Therefore, B. phangii is morphologically distinct
3–6(7) cell storeys and (3–)4–7(8) cell storeys, respectively] from all other species of section Turfosa, and its rbcL
Johnston et al.: Freshwater red algae in Indonesia and Malaysia 337

Figs 32–38. Kumanoa celebes sp. nov. IR-27 BHO voucher.


Fig. 32. Confluent barrel- to obconic-shaped whorls with loose carposporophytes (arrowheads) that are as high as the whorl. Scale bar ¼
400 lm.
Fig. 33. Immature carpogonium (arrowhead) on a twisted carpogonial branch (double arrowheads). Scale bar ¼ 10 lm.
Fig. 34. Carpogonium with cylindrical trichogyne (arrowhead). Scale bar ¼ 20 lm.
Fig. 35. Carpogonium with asymmetrical club-shaped trichogyne (arrowhead), attached spermatia (double arrowheads) and putative
gonimoblast filament (arrow) arising from the carpogonium base. Scale bar ¼ 20 lm.
Fig. 36. Carpogonium with symmetrical club-shaped trichogyne (arrowhead) and attached spermatia (double arrowhead). Scale bar ¼ 20
lm.
Fig. 37. Spermatangia (arrowheads) clustered at the tips of fascicle branches. Scale bar ¼ 20 lm.
Fig. 38. Carposporangia (arrowheads) at the tips of gonimoblast filaments. Scale bar ¼ 20 lm.

sequence is distinct from specimens of B. turfosum. The type Entwisle, M.L. Vis, W.B. Chiasson, Necchi & A.R. Sher-
localities of both B. phangii and B. tapirense are in Malaysia, wood based on the molecular data. Kumanoa celebes differed
and B. turfosum (as B. vagum) was reported from this from each of these taxa in at least one key morphological
country, such that half of the known species diversity (three feature as follows: K. globospora in carpogonium length [40–
of six species) for the section has been reported for Malaysia 51 lm vs 20–34(40) lm, respectively], K. novaecaledonensis
(Kumano 1978). in carposporophyte arrangement (dense vs loose, respective-
The new species, Kumanoa celebes, was placed in a clade ly) and carpogonium length (40–51 lm vs 20–25 lm,
with K. globospora (Israelson) Entwisle, M.L. Vis, W.B. respectively), K. virgatodecaisneana in carpogonium length
Chiasson, Necchi & A.R. Sherwood; K. novaecaledonensis (40–51 lm vs 19–35 lm, respectively), K. mahlacensis in
M.L. Vis, Necchi, W.B. Chiasson & Entwisle; K. virgatode- whorl morphology [well-developed, primary fascicles 9–13
caisneana (Sirodot) Entwisle, M.L. Vis, W.B. Chiasson, cell storeys vs reduced, 4–7(9) cell storeys, respectively], K.
Necchi & A.R. Sherwood; K. mahlacensis (Kumano & W.A. australica in fascicle cell shape (distal fascicle cells obovoid
Bowden-Kerby) M.L. Vis, Necchi, W.B. Chiasson & to pear shaped L/D 1.5–2 vs distal fascicle cells elliptical to
Entwisle and K. australica (Kützing ex Entwisle & Foard) fusiform L/D 4–7, respectively) (Necchi & Vis 2012). In
338 Phycologia, Vol. 53 (4)
Johnston et al.: Freshwater red algae in Indonesia and Malaysia 339

morphology this taxon was closest to K. abilii (Reis) Necchi from specimens in the region is needed to provide the answer
& M.L. Vis from the key in Necchi & Vis (2012) but as to the number of species.
molecular data showed these two taxa to be distantly related Although our molecular data for Sirodotia did not clarify
within the genus. The morphological similarities are the number of species for the genus in Southeast Asia, the
probably due to convergent evolution. In terms of biogeog- results did show that the specimen from Malaysia (MR-08)
raphy, the specimens in the clade with K. celebes were and specimens from South America (DQ646475) attributable
collected from three distant geographic regions, North to S. delicatula based on morphology were not monophy-
America (K. mahlacensis, K. virgatodecaisneana), Australasia letic. The type location at Bogor Botanical Gardens, Bogor,
(K. australica, K. novaecaledonensis) and South America (K. Indonesia, was visited but S. delicatula was not found. The
globospora), such that no affinity with the flora of a Malaysian specimen is geographically closer to the Indone-
particular region can be discerned. Interestingly, the only sian type locality than the South American specimen, and
other Kumanoa specimen, K. gibberosa, sequenced from therefore we suggest that the Malaysian specimen represents
Southeast Asia was far removed from this clade. S. delicatula, and the South American specimen represents a
Kumanoa tortuosa comb. nov. (as Batrachospermum cryptic species.
tortuosum) was listed as a doubtful species in Necchi & Vis Balliopsis prieurii was previously reported from Malaysia
(2012) because key features were missing in the description (Kumano & Phang 1990), and the specimens from the
and type material as well as a potential synonymy with K. current study were similar in morphology. Both accounts are
montagnei Entwisle, M.L. Vis, W.B. Chiasson, Necchi & similar to reports from South America (Saunders & Necchi
A.R. Sherwood. We collected specimens morphologically 2002); however, the rbcL sequences from our study diverge
identical to the protologue (Kumano 1978) from the type considerably from the South American specimens (Vis et al.
locality (Fort Iskander, Tasek Bera, Pahang, Malaysia). 2007). It is possible that Balliopsis is the chantransia stage of
From our new observations, K. tortuosa differs from K. a batrachospermalean taxon of which the gametophyte has
montagnei by having dense, compact carposporophytes, not yet been sequenced, analogous to the findings for
freshwater Ptilothamnion (Vis et al. 2006). These researchers
smaller carposporangia (8–6 lm diameter, 8.5–10.5 lm
showed with sequence data that the Ptilothamnion morphol-
length) and smaller cylindrical carpogonia (5–6 lm diameter,
ogy was a chantransia stage of Batrachospermum antipodites
typically ~ 33 lm length but can be up to 40 lm length).
Entwisle & Foard and an unknown Kumanoa species.
Unfortunately, we could not sequence the rbcL gene from
Therefore, no new species epithet is proposed, even though
the K. tortuosa material but based upon new morphological
there was sequence divergence, since this may serve to only
observations, we have transferred it to the genus Kumanoa. It
perpetuate superfluous names in the literature.
is still known only from the type locality.
Nemalionopsis shawii (Thoreales) was originally described
Several names have been previously ascribed to Sirodotia from the Philippines (Skuja 1934), and we report it here for
species from Southeast Asia. Two species of Sirodotia have the first time from Indonesia. Molecular analyses showed
been reported from Malaysia and Indonesia: S. ateleia and that the Indonesian specimen was sister to a specimen
S. delicatula, respectively (Skuja 1938). More recent studies identified as N. tortuosa from Taiwan (DQ296122) and only
have questioned the validity of S. ateleia: Umezaki (1960) distantly related to a North American and a Hawaiian
and Necchi (1991) placed it in synonymy with S. delicatula. specimen each identified as N. tortuosa (syn. N. shawii forma
However, Necchi et al. (1993), after exhaustive examination caroliniana, AB159658 and EF116879, respectively). Bour-
of the type specimens of Sirodotia, overturned the synonymy relly (1970) and Howard & Parker (1979) discussed the
of S. ateleia with S. delicatula and synonymized it with the possibility that N. tortuosa and N. shawii were synonymous
older name S. huillensis based on whorl morphology. The taxa. However, very few sequence data are available, no
type specimens of S. huillensis and S. ateleia were found to holotype was designated for N. tortuosa and the taxonomy
have truncate-pyramidal whorls; whereas, the type specimen of this genus is in need of much work. For now, we choose to
of S. delicatula had barrel-shaped or obconic whorls. We leave this specimen with the name N. shawii since its
distinguished our specimen (MR-08) as S. delicatula and not morphology is similar to the protologue and overlaps with
S. huillensis based on whorl morphology. Therefore, based all characters provided by previous, morphological exami-
on the literature, it appears there are currently two distinct nation of isotype material of N. shawii (Sheath et al. 1993).
species, S. delicatula and S. huillensis (as S. ateleia), in The sequenced data for two chantransia stage sporophyte
Southeast Asia. We believe that there is still a question specimens from Java, Indonesia, confirm them to be the
concerning the number of species (1, 2 or 3) because S. sporophyte of Sheathia arcuata; these specimens were only 2
ateleia has been variously synonymized based on morphol- bp different from the sequence for specimens from the
ogy but there may be cryptic species, and there is only Hawaiian Islands (Chiasson et al. 2007; Salomaki et al.
sequence data for a single specimen resembling S. delicatula 2014). Interestingly, this taxon was collected on Kauai,
from this region. Future research with more sequence data Oahu, Molokai, and Hawaii but only sporophytes, no

Fig. 39. Maximum likelihood (ML) tree (ln likelihood ¼ 20880.803788) based in rbcL sequence data showing the relationships of
Batrachospermales and Thoreales species. Classification in the Batrachospermales follows Entwisle et al. (2009) and Salomaki et al. (2014); B.
¼ Batrachospermum. The outgroup taxa (Balbiania investiens and Rhododraparnaldia oregonica) were pruned for presentation. An asterisk
denotes . 80% ML bootstrap support and . 0.90 posterior probabilities from BI analysis. Specimens from this study in bold (see Table S2).
340 Phycologia, Vol. 53 (4)

gametophytes, were observed despite substantial sampling tiomanense and Thorea prowsei, could not be visited, and
effort (Carlile & Sherwood 2013). Similar sequences are also large areas of both countries could not be sampled. We
known from Taiwan, where gametophytes were collected visited the type location (Gombak River in Selangor,
and sequenced (Chou & Wang 2006; Vis et al. 2010). It Malaysia) and surrounding areas for Balliopsis pinnulata,
should be noted that the chantransia stage sporophyte Batrachospermum gombakense, and Thorea clavata but did
represents the sporophyte of a number of batrachosperma- not find them; their occurrence may be seasonal and outside
lean taxa such that sequence data are needed to confirm the of our collecting period. Likewise, Batrachospermum lochm-
species identity (Chiasson et al. 2005). odes was described in the 1930s from springs on the Dieng
Compsopogon caeruleus (Compsopogonales) was previously Plateau in central Java, Indonesia. This location was visited,
reported from Malaysia and Indonesia (Skuja 1938; Ratna- and the taxon was not found, possibly because the land has
sabapathy & Kumano 1982), and we collected it from both been heavily modified from a natural state. The type
countries. Sequence data from three of the five collections localities for Kumanoa gibberosa and Sirodotia delicatula
support previous findings that this taxon is genetically similar were visited but they were not found at these localities.
across its broad geographic range (Carlile & Sherwood 2013; However, they were collected in Indonesia and Malaysia,
Necchi et al. 2013). In addition, our samples supported the respectively, which extended their ranges beyond the type
conclusion that this taxon is morphologically plastic; both the localities.
typical and the spiny morphology were observed, and the
rbcL sequences were similar.
Although many taxa appear to be endemic to the region, ACKNOWLEDGEMENTS
the cosmopolitan species Compsopogon caeruleus was col-
lected, and Batrachospermum macrosporum was shown to We thank Dr Gene Ammarell for facilitating our collabo-
have a wider geographic distribution than previously ration, Dr Christine Fletcher for assistance and advice in the
thought. To our knowledge, neither the gametophyte nor search for Kumanoa gibberosa, Dr Siripen Traichaiyaporn
the sporophyte stage of B. macrosporum has been previously for her advice and insights concerning the Thoreales, Fisher
reported from Malaysia. Yet, in this survey, 12 collections of Saint Amour for field and photographic assistance, Dr Yong
the sporophyte and one collection of gametophyte were Hoi Sen for his invaluable guidance in locating sites in
made. Six of the sporophyte specimens were sequenced and Malaysia, Dr Kathy Yule for her generous hospitality and
were unequivocally identified as B. macrosporum because the advice, Chou Lee Yiung and Ong Sue Peng for their help in
rbcL sequences were identical to specimens from Brazil and the field, and Dr Dwia Aries Tina for sample shipping
Bolivia, and only 1 bp different to specimens from French recommendations. This research was funded by an Ohio
Guiana, the type locality for this species. Batrachospermum University Student Enhancement Award to ETJ and
hypogynum was first described from Malaysia and is Research Incentive funds from Ohio University to MLV.
morphologically similar to B. macrosporum; the two species
overlap with regard to carpogonia size and shape, and both
have large carposporangia but differ in the maximum number
SUPPLEMENTARY DATA
of cells in the carpogonial branch (Kumano 2002). Sheath et
al. (1994) recorded similar carpogonial branch cell numbers
but distinguished these two taxa based on abundant or sparse Supplementary data associated with this article can be found
secondary fascicles; however, whorl morphology can be quite online at http://dx.doi.org/10.2216/13-223.1.s1.
variable, even on the same thallus, in Batrachospermum
species. These two species may or may not be synonymous
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