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2. In the human digestive tract, explain precisely and in details the enzymatic
catabolic processes of the following food polypeptide:
K–Y–Q–H–N–P–W–R–S–A–E–M–D–P–F
1 2 3 4 5 6 7 8 9 10 11 12 13 14
Exopeptidases- produced by intestinal epithelial cells act within the brush border
and also within the cell
Aminopeptidase: secreted by the cells of the small intestine, this enzyme prefers to
cleave peptide bonds in which the amino group is free (does not form any peptide
bond, it means from amino terminal end of a peptide)
Carboxypeptidase: secreted by the cells of the pancreas, this enzyme prefers to
cleave peptide bonds in which the carboxyl group is free (does not form any
peptide bond, it means from carboxylic terminal end of a peptide)
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Prolidase: secreted by the intestinal cells of the small intestine, it prefers to cleave
peptide bonds in which the secondary amino group is provided by praline (speficif
for amino group of proline)
1= pepsin 8= trypsin
2= chymotrypsin 9= Aminopeptidase
3= Aminopeptidase or carboxypeptidase 10= Aminopeptidase
4= trypsin 11= Aminopeptidase
5= prolidase 12= Aminopeptidase
6= pepsin 13= prolidase
7= chymotrypsin 14= pepsin
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4. Differentiate the terms essential amino acids and non-essential amino acids by
giving examples for the human beings.
6. In the cases of malnutrition or under nutrition, the human body can make the
arrangements (in the term of his needs) for converting the proteins into
carbohydrates or into lipids, the carbohydrates into lipids and vice versa.
Explain precisely and in details the following conversions: (10 marks)
a) Conversion of the proteins into carbohydrates
b) Conversion of the proteins into lipids
c) Conversion of the carbohydrates into lipids
d) Conversion of carbohydrates into proteins
e) Conversion of lipids into carbohydrates
The glucogenic amino acids can undergo the deamination or transamination and
be transformed into pyruvic acid. This latter enters carboxylation and becomes
oxaloacetic acid. This latter will be transformed into phosphoenolpyruvic acid
through phosphorylant decarboxylation. The two molecules of
phosphoenolpyruvic acid enters gluconeogenesis and will become glucose.
Note: the deamination aspartic acid can produce an oxaloacetic acid which
undergoes the above mentioned way and finally produces glucose.
The ketogenic amino acids can undergo the deamination or transamination and
be transformed into pyruvic acid. This latter enters decarboxylation in presence
of coenzyme A and becomes acetyl-coA. This latter can be used in synthesis of
fatty acids, ketone bodies, cholesterol and other compound derivate from
cholesterol.
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reaction of carboxylation. By transamination oxaloacetic acid becomes aspartic
acid (aminoacid).
Note: some intermediates of Krebs cycle can be used in formation of the
following amino acids:
Aspartic acid from oxaloacetic acid, glutamic acid (amino acid) from α-
ketoglutaric acid.
07. Explain the process of conversion of galactose into glucose. Explain how
Galactosemia can occur in the human body.
These acids can be involved in different pathways depending on the needs. For
example: pyruvic acid can enter Krebs cycle if the body needs energy (ATP);
this acid can be used in synthesis of proteins by transamination or in synthesis
of lipids (this acid enters decarboxylation in presence of coenzyme A and be
transformed into acetyl-coA which will produce fatty acids or ketone bodies, all
lipids).
Krebs cycle: it is the process of synthesis of energy (ATP) from the molecules of
acetyl-coA. This energy is used by the cells in different activities, for example
during a cell division.
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where these molecules of acetyl-coA can be used and explain in details the
importance of these biochemical processes.
A cholesterol ester is, as its name would imply, an ester of cholesterol. The ester
bond is formed between the carboxylated group of a fatty acid and the hydroxyl
group of cholesterol. Cholesterol Esters have a lower solubility in water than
Cholesterol and are more hydrophobic. They are associated with atherosclerosis.
It helps cells in communicating with each other by transferring molecules between
them.
When it comes to managing optimal health and fitness, one of the most
misunderstood concepts is the role of cholesterol in the body. Hyped by the media
as a major risk factor for heart disease, cholesterol actually has a number of
important roles in the body - without which, we couldn't survive.
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While it is true that high levels of cholesterol consumed in the diet is one the top
risk factors for heart disease (the others being high blood pressure, cigarette
smoking, and diabetes), cholesterol is important for digestion, making hormones,
synthesizing vitamin D, maintaining cell membranes, learning, memory and sleep.
11. Define the term vitamin. Explain the physiological roles of the water soluble
vitamins in the human body and explain the consequences linked to the
deficiencies of those vitamins.
All of the body’s cells can use only adenosine triphosphate (ATP) as an energy-
releasing substance. Since the ATP reserves in the body are limited, ATP has to be
continuously resynthesized. ATP is produced from the energy sources fat
and carbohydrates over a fairly long time frame. If a cell needs energy, the “high-
energy” ATP is converted to “low-energy” adenosine diphosphate (ADP). Similar
to a battery, creatine (phosphocreatine) charges low-energy ADP up to high-
energy ATP until ATP that has been converted from fat and carbohydrates is
available.
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Muscles contain 3-4 more phosphocreatine than ATP, and the phosphocreatine
serves as a short-term energy reserve for the times when the need for ATP is
greater than the synthesis of ATP from carbohydrates and fat can provide.
Phosphocreatine levels and the regeneration of ATP play key roles when the body
is involved in intense, repetitive forms of exertion.
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-Inhibition of glucagon and somatotropin release.
-Inhibition of insulin, inhibites the release of stimulating hormone, it
suppresses the release of gastrointestinal hormone (gastrin,
cholecystokinin, secretin, motelin, vasoactive intestino peptide).
15. Explain briefly how the proteins (aminoacids) can be converted into lipids
using the catabolic processes of F & Y.
16. Explain in details how the following metabolic diseases can occur in the
human body: Phenylketonuria, Alcaptonuria, and Scorbut using the catabolic
processes of F & Y.
This enzyme is necessary to metabolize the amino acid phenylalanine to the amino
acid tyrosine. When phenylalanine hydroxylase is deficient, phenylalanine
accumulates in the blood and is converted into phenylpyruvate (phenylketones)
via a transaminase path way which is detected in the urine.
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.
Alcaptonuria: It is a genetic
• Phenylalanine Transaminasephenylpyruvate
disorder of phenylalanine
Phenylalanine
Phenylalanine
hydroxylase
hydroxylase absent and tyrosine metabolism. It
present
is characterized by lack of
Tyrosine
the enzyme homogentisate
Melanins
1, 2-dioxygenase which
metabolizes phenylalanine
Fumarate+Acetoacetate and tyrosine. These amino
acids accumulate in the
blood leading to excretion of homogentisic acid (alkapton) in the urine.
Urine turns black if it is allowed to stand.
17. In the human digestive tract, explain precisely and in details the enzymatic
catabolic processes of the following food carbohydrates: sucrose, lactose, maltose,
trehalose, starch, glycogen, cellulose.
Sucrose: it is readily digested in the stomach into its components sugar, by acidic
hydrolysis, glucose and fructose are rapidly absorbed into the blood stream in the
small intestine.
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Starch is composed of many molecules of glucose linked together by alpha 1-4
glucosidic bonds. It is synthesized only by the plant cells.
There are 2 forms of starch:
- Amylose: In which molecules of glucose are linked together
in straight chains. It has hydrogen bonds but not ramifications.
- Amylopectine: In which the glucose chains are highly
branched. Each lateral chain composed of alpha 1-4 osidic bonds of glucose and
alpha 1-6 osidic bonds link lateral chains with main chains.
The following enzymes are involved in degradation of starch:
Alpha amylase will break down alpha 1-4 glucosidic bonds in main and lateral
chains forming the molecules of maltose and residual dextrines.
-Amylo alpha 1-6 glucosidase will break down alpha 1-6 glucosidic bonds.
Maltase will break down alpha 1-4 glucosidic bond in maltose.
Glycogen is a polysaccharide synthesized in liver and muscles. It is formed by
large polymers of glucose and is the major animal storage carbohydrate it has
structure as the same amylopectin of starch.
The enzymes which help in glycogen are: Alpha Amylase break down Alpha 1-4
glucosidic bonds.
Amylo Alpha 1-6 glucosidase break down Alpha1-6 osidic bonds
Maltase is ready to break down Maltose includes 2 molecules of glucose.
18. Explain briefly the following biochemical processes and explain their
physiological importance in the functioning of the human body: Glycogenesis &
Pentose-Phosphate Pathway (for PPPW explain at least triple role).
Pentose-Phosphate Pathway:
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- When these reactions do not occur, the NADPH can lead to the formation of
energy by the NAD transhydrogenation committed then, under its reduced form
NADH in the chain of oxidative phosphorylation. (Examples: ATP
19.In the functioning of the human body, explain in details the role of the
following lipidic compounds: prostaglandins, leucotrienes, PAF acether,
cerebrosides, sulfatides.
The diversity of receptors means that prostaglandins act on an array of cells and
have a wide variety of effects such as: cause constriction or dilation in vascular
smooth muscle cells, cause aggregation or disaggregation of platelets, sensitize
spinal neurons to pain, decrease intraocular pressure, regulate inflammatory
mediation, regulate calcium movement, control hormone regulation, control cell
growth, act on thermoregulatory center of hypothalamus to produce fever.
Leukotrienes are fatty molecules of the immune system that contribute to
inflammation in asthma and bronchitis.
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stratum corneum. Maintain the water permeability barrier of the skin. A
defect in degradation of glucocerebrosides in Gaucher's disease..The
corresponding defect for galactocerebrosides is Krabbe disease.
20. Explain the physiological roles of the fatty soluble vitamins in the human body
and explain the consequences linked to the deficiencies of those vitamins. Define
the term avitaminosis.
Vitamin A: Helps to form skin and mucous membranes and keep them healthy,
thus increasing resistance to infections; essential for night vision; promotes bones
and tooth development. Beta carotene is an antioxidant and may protect against
cancer.
Vitamin K: Blood clotting. At least 13 different proteins and the mineral Ca2+are
involved in making blood clotting.
Vitamin K is essential for the activation of one of these proteins, among of them
prothrombin, the precursor of thrombin. When any of the blood-clotting factor is
lacking hemorrhage disease occurs. Helps blood to clot.
Explain briefly the process of β-oxidation of fatty acids. Explain the completely
oxidation of fatty acids and its physiological importance.
β-oxidation is the process by which fatty acids, in the form of Acyl-CoA
molecules, are broken down in mitochondria and/or in peroxisomes to generate
Acetyl-CoA, the entry molecule for the Krebs cycle.
The molecules that start this cycle (the inputs) are the saturated fatty acid and
coenzyme A products (fatty acyl-CoA). The fatty acids involved can be even
numbered carbon chains with no double bonds. Some other inputs that are added
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after the cycle has started are FAD (flavine adenine dinucleotide), water, ATP,
and NAD+(nicotinamide adenine dinucleotide).
The products of this pathway (the outputs) include FADH2, NADH, acetyl-CoA,
and of course, the final products. The final fatty acid products are acetyl-CoA for
the even numbered fatty acids (without double bonds), and for those with an odd
number of carbons, it is 3-carbon propionyl-CoA instead.
The beta oxidation of fatty acids involves three stages:
Activation of fatty acids in the cytosol
Transport of fatty acids into mitochondria
Beta oxidation proper in the mitochondrial matrix
1. Dehydrogenation by FAD: The first step is the oxidation of the fatty acid by
Acyl-CoA-Dehydrogenase. The enzyme catalyzes the formation of a double bond
between the C-2 and C-3.
2. Hydration: The next step is the hydration of the bond between C-2 and C-3
3. Oxidation by NAD+: The third step is the oxidation of L-β-hydroxy acyl CoA by
NAD+. This converts the hydroxyl group into a keto group.
4. Thiolysis: The final step is the cleavage of β-keto acyl CoA by the thiol group of
another molecule of CoA. The thiol is inserted between C-2 and C-3.
i. 21.The human body completely oxidizes the stearic acid and a molecule of
galactose to produce the maximum amount of energy ATP needed in various
cellular activities: Explain and show how the lipids produce more energy than
carbohydrates by calculating the energy yield (rendement énergétique) per
carbon atom for lipids and for carbohydrates.
ii. Stearic acid is first activated and turns into stearyl-CoA in the presence of one
molecule of ATP). The stearyl-CoA enters a process of β-oxidation and each
round of β-oxidation produces an acetyl-CoA and a new acyl-CoA with 2 carbon
atoms less. This acyl-CoA between enters in new the β-oxidation and so on until
all the stearyl-CoA becomes totally 9 molecules of acetyl-CoA with 8 β-oxidation.
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Each round of β-oxidation produces 5 ATP (5 × 8 = 40ATP). Each acetyl-CoA
produces 12ATP in the Krebs cycle (12 × 9 = 108ATP). The total number of ATP
= ((40ATP + 108ATP) - 1ATP) = 147ATP/18carbone of stearic acid.
iii. The energy efficiency through carbon atom in the carbohydrate: 38ATP = 6.33
ATP/1 carbon
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iv. The energy efficiency through carbon atom in the lipid: 147ATP = 8.16 ATP/1
carbon
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By comparing yields énergétique, we see that the lipids that are more énerégtiques
carbohydrates (8.16 ATP / 1 carbon lipid and 6.33 ATP / 1 carbon from
carbohydrates).
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18.There are two of different forms of albinism; a partial lack of the melanin
is known as hypomelanism, or hypomelanosis and the total absence of
melanin is known as amelanism or amelanosis.
19.Genetic mutations that affect the production of a pigment called melanin.
There is a cell called the melanocyte that is responsible for giving skin,
hair, and eyes pigmentation. In albinism, the melanocytes are present, but
genetic mutations interfere with their pigment production or their ability
to distribute it to keratinocytes, the major cell type comprising the
epidermis, or outer layer of the skin.
20.Albinism was formerly categorized as tyrosinase-positive or -negative. In
cases of tyrosinase-positive albinism, the enzyme tyrosinase is present.
The melanocytes (pigment cells) are unable to produce melanin for any
one of a variety of reasons that do not directly involve the tyrosinase
enzyme. In tyrosinase-negative cases, either the tyrosinase enzyme is not
produced or a nonfunctional version is produced. This classification has
been rendered obsolete by recent research
21.
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decarboxylation of all 4 acetyl side chains, converting them to methyl groups
(catalyzed by Uroporphyrinogen Decarboxylase).
oxidative decarboxylation of 2 of the 4 propionyl side chains, converting them to
vinyl groups (catalyzed by Coproporphyrinogen Oxidase)
oxidation adds more double bonds (catalyzed by Protoporphyrinogen Oxidase),
yielding protoporphyrin IX.
Fe++ is added to protoporphyrin IX via Ferrochelatase. This enzyme in
mammals is homodimeric and contains two [2Fe-2S] iron-sulfur clusters. A
conserved active site histidine, along with a chain of anionic residues, may
conduct released protons away, as Fe++ binds from the other side of the
porphyrin ring, to yield heme.
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39.oxidation adds more double bonds (catalyzed by Protoporphyrinogen
Oxidase), yielding protoporphyrin IX.
40.Fe++ is added to protoporphyrin IX via Ferrochelatase. This enzyme in
mammals is homodimeric and contains two [2Fe-2S] iron-sulfur clusters.
A conserved active site histidine, along with a chain of anionic residues,
may conduct released protons away, as Fe++ binds from the other side of
the porphyrin ring, to yield heme.
45.Explain and compare the structures of nucleic acids (DNA, mRNA, rRNA,
tRNA) and explain their main functions in the functioning of the human
body.
46.In the cases of malnutrition or undernutrition, the human body can make
the arrangements (in the term of his needs) for converting the proteins
into carbohydrates or into lipids, the carbohydrates into lipids and vice
versa. Explain precisely the process of conversion of lipids into
carbohydrates and proteins using the glyoxylate cycle.
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1. Albinism A.Is a hypoglycemic process
decreasing the level of glucose in
blood
2. Glycogenolysis B.Is a metabolic disorder caused
by the deficiency of
homogentisate oxydase in the
body
3. Oxytocin C. Is a metabolic disorder caused
by the deficiency of tyrosinase in
the body
4. Glucagon D.Is a metabolic process increasing
the level of glucose in blood
5. Glycogenesis E. Participates in digestion of
dietary polymers in the human
gastrointestinal tract
6. PPPW F. causes the uterine contraction
and milk ejection in lactating
females
7. Taurochalate of G.Increases the glucose level in
sodium blood by stimulating
glycogenolysis
8. Alcaptonuria H.stimulates water reabsorption
from the filtrate in kidney
9. Glutamine I. produces the molecules of
pentose-phosphates which are
essential for the synthesis of
nucleotides and nucleic acids
10. Antidiuretic J. Is one of the amino acids which
hormone participate in the process of
detoxication of thenhuman body
by neutralizing the toxic
compounds
a. Alanine + αketoglutarate............Transamination
pyruvate......................... + Glutamate
b. Aspartate Deamination ......................ammonia.......+ acetoacetic
acid................................
c. Serine Decarboxylation ethanamine.......................... + CO2
d. glutamine ........................ Decarboxylation γ-aminobutyrate + CO2
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e. Glycogen(n residues) + pi............ glycogenolysis glycogen (n–1 residues) + .glucose-1-
phosphate.................
f. Glucose-6-phosphate the complete oxidative phase of PPPW ribulose-5-
phosphate ..............+ ..NADH.......... + CO2
B. The main biochemical processes by which fatty acids are completely oxidized
and transformed into carbon dioxide and water by producing energy are …β-
oxidation............................…………
C. ketogenesis……………. is the biochemical process by which ketonies bodies are
synthesized in the liver.
E. The biochemical process by which the molecules of acetyl-CoA which are not
immediately used by the human body are stored is ketogenesis……………….
……………………….
H.The process of the transfer of genetic information from DNA to mRNA is called
transcription…………
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Multiple choice questions
7. In the human body the glycogen molecules are mainly stored in _______
a. liver and muscles
b. liver and pancreas
c. Muscles and bile
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d. liver and adipose tissue
10. A living cell involves a C26 saturated fatty acid in β-oxidation for getting an
amount of ATPs to use in different cell activities: how many rounds of β-
oxidation are needed to convert C26 saturated fatty acid into the molecules of
acetyl-CoA and how many molecules of acetyl-CoA are produced?
a. 13 rounds and 12 acetyl-CoA
b. 11 rounds and 12 acetyl-CoA
c. 12 rounds and 13 acetyl-CoA
d. None of the above
11. A living cell involves a C26 saturated fatty acid in the complete oxidation
(β-oxidation, Krebs cycle and electron transport system) for getting an
amount of ATPs to use in different cell activities: how many ATPs are
produced?
a. 60
b. 156
c. 216
d. 204
12. In the human digestive tract the food glycogen is digested respectively by
the following enzymes:
a. Lactase, α-amylase, amylo-α-1,6 glycosidase, maltase
b. α-amylase, maltase, amylo-α-1,4 glycosidase, ,
c. Lactase, invertase, α-amylase, amylo-α-1,6 glycosidase, maltase
d. α-amylase, amylo-α-1,6 glycosidase, maltase
13. The term “metabolism” refers to _______
a. the digestion of the food polymers into monomers
b. the anabolic and catabolic processes
c. the synthesis of big molecules from simpler molecules.
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d. the breakdown of big molecules into small molecules.
18. In the human body the essential aminocids are always provided by
____________
a. Transamination
b. Glucogenic aminoacids
c. Taken food
d. None of the above
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b. aminoacids that can be used to convert the proteins to carbohydrates
c. aminoacids that can be converted to glycolysis
d. Both A and B are correct
21. In the human body the glycogen molecules are mainly stored in _______
a. liver and pancreas
b. Muscles and bile
c. liver and muscles
d. liver and adipose tissue
22. The main function of Hb in the human body is ___________
a. to carry O2 molecules from the lungs to the tissue cells
b. to carry CO2 molecules from the tissue cells to the lungs
c. to carry blood from the heart to the tissue cells and lungs
d. Both A and B are correct
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c. Glycogenesis
d. Alcoholic fermentation
28. In the human digestive tract the food glycogen is digested respectively by
the following enzymes:
a. Lactase, α-amylase, amylo-α-1,6 glycosidase, maltase
b. α-amylase, maltase, amylo-α-1,4 glycosidase, ,
c. α-amylase, amylo-α-1,6 glycosidase, maltase
d. Lactase, invertase, α-amylase, amylo-α-1,6 glycosidase, maltase
32. The association between the sugars and proteins makes _______
a. glycolipids
b. galactosides
c. glycoproteins
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d. ganglioside
33. Which of the following is a steroid hormone stimulating the process of
spermatogenesis?
a. Testosterone
b. Aldosterone
c. Progesterone
d. Cortisone
34. Which of the following is a nucleic acid involved in the transfer of genetic
information from the nucleus to the cytoplasm of an eukaryotic cell?
a. DNA
b. RNAm
c. RNAr
d. RNAt
35. It is a water soluble vitamin that plays an important role in the process of
RBC growth _____
a. Vitamin B6
b. Vitamin D
c. Vitamin B12
d. Vitamin K
36. Which of the following fatty acids is essential for the human beings_______
a. Oleic acid
b. Palmitic acid
c. Butyric acid
d. Linoleic acid
37. The process of transfer of the genetic information from DNA to RNA m is
called_________
a. Transcription
b. Translation
c. RNA polymerase
d. DNA synthetase
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39. Which of the following is the final product of the degradation of Hb in the
spleen?
a. Globin
b. Bilirubin
c. Stercobilin
d. Urobilin
42. It is a lipidic compound that acts as the myelin sheath in the nervous
system:
a. Prostaglandin
b. Glyceride
c. Cerebroside
d. Leukotriene
43. Which of the following statements is NOT TRUE for a DNA molecule?
a. DNA usually occurs inside nucleus and some cell organelles
b. DNA contains the genetic information
c. Purine and Pyrimidine bases of DNA are in equal number
d. DNA is usually single stranded with two polynucleotidic chains
44. The equation C6H12O6+6O6 6CO2+6H2O+energy (ATP) refers to
_______
a. β-oxidation, glycolysis, Krebs cycle and electron transport system
b. Aerobic glycolysis, Pentose phosphate pathway and Krebs cycle
c. β-oxidation, Krebs cycle, glycolysis, electron transport system
d. Cellular aerobic respiration
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45. The organs involved (in order) in the degradation of Hb provided by the
dead RBC are_______
a. spleen, liver, small intestine
b. bilirubin, glucuronic acid, stercobilinogen
c.blood, liver, kidney
d. Both B and C are correct
47. Which of the following chains is complementary to this DNA chain ....A-G-
C-T-A-T-C-G....?
a. A-G-C-A-T-A-C-C
b. T-C-C-T-A-T-G-C
c. T-C-G-A-T-A-G-C
d. A-C-G-A-T-A-G-G
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51. The urea (the end product of urea cycle) is routinely measured in the
blood as ________
a. Urea cycle nitrogen
b. Blood urea nitrogen
c. Uric acid nitrogen
d. Blood Ammoniac acid
52. The process in which the genetic information is transferred from DNA to
RNA is called ______
a. replication
b. transcription
c. translocation
d. translation
53. The process in which the genetic information is transferred from RNA m to
RNAr is called _____
a. replication
b. translocation
c. translation
d. transcription
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57. Match the following fatty soluble vitamins with their functions in the
human body:
Vitamin Function
1. Vitamin A A. Prevention of
2. Vitamin K oxidative damage
3. Vitamin E B. Calcium and
4. Vitamin D phosphate metabolism
C. Vision
D. Blood clotting
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