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GENERAL CHARACTERISTICS
Small coccobacilli
Pinpoint colonies on MAC
All are non-motile @ 37deg C
All are motile at RT except Yersinia pestis
Yersinia is suspected when TSI rxn is yellow over orange (weak acid productionn in the
slant w/ no change in butt)
Spectrum of Disease
Enterocolitis
Disease Bubonic plague Lymphadenitis
Appendicitis-like syndrome
Pneumonic plague
Septicemia
Bubonic Plague
– high fever and swelling of axilla and groin lymph nodes (buboes); rapidly
progresses to bacteremia that is often fatal
Pneumonic Plague
– malaise; resp infection results from bacteremia; rapidly fatal
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Gram stain: coccobacilli or straight rods w/ rounded ends
Methylene blue or Wayson stain
- Y. pestis appears as a “closed safety pin”; rapid dx of plague
Cultivation
on BAP, after 48-72 hours, grey-white to slightly yellow opaque raised, irregular “fried
egg” morphology; alternatively colonies may have a “hammered copper” shiny surface. Y.
pestis are best incubated at 25-30 deg C
Yersinia pestis
– rough, cauliflower appearance; in broth: “stalactite patterns” in w/c clumps of
cells adhere to one side
Purpose:
Selective for Yersinia spp esp. Yersinia enterocolitica; may be also useful for
the isolation of Aeromonas spp
Peptone base w/ yeast extract, mannitol and bile salts. Supplemented w/ the 3 antibiotics
(CIN); neutral red and crystal violet (indicators)
“bull’s eye colonies” dark red or burgundy centers w/ translucent border (Yersinia
enterocolitica); seen after 48 hrs of incubation
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Yersinia (-) oxidase
Speciation of Yersinia
ONPG + + +
Motility @ 37degC - - -
Motility @ 25deg C - + +
Fermentation of:
Sucrose - - +
Rhamnose - + -
Sorbitol - - +
Merthyl red + + +
Indole - - delayed
Christensen urea - + +
PAD - - -
ODC - - +
KLEBSIELLEAE
Klebsiella
Enterobacter
Pantoea
Serratia
Cronobacter
Hafnia
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1. Are Voges-Proskauer (VP) positive – all produce acetoin as end pdt in their
glucose metabolism
2. Produce large amounts of gas in their TSI deep portion
1.KLEBSIELLA
Important Characteristics:
1. TSI Rxn: AA+-
2. Most grow on Simmon’s citrate and in KCN broth
3. H2S negative
4. A few can hydrolyze urea
5. Negative MR, Positive VP
6. W / few exceptions, indole is not produced from tryptophan
7. Motility is variable
– Klebsiella pneumoniae
Can cause:
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Most infections are nosocomial since org can colonize the hands, bowel and other
body sites of hospital personnel; isolated from contaminated medications, resp
care equipment and IV solns
Klebsiella oxytoca has been isolated from blood and stool cultures
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2. ENTEROBACTER
– motile rods and ODC (ornithine decarboxylase) positive
– 12 spp. exist and are found widely in nature and dairy products
– Most infections caused by these genera are opportunistic: UTI, resp and wound
infections
– 2 most common isolates: E. cloacae and E. aerogenes
Enterobacter cloacae
- predominant isolate and associated w/ bacteremia, RT, UT and wound infections in
BURN PATIENTS
Enterobacter cancerogenus
- (formerly E. taylorae) unique in the genus since it is LACTOSE NEGATIVE BUT
ONPG POSITIVE
Enterobacter gergoviae
- resembles E. aerogenes but can be differentiated from it by its STRONG UREASE
ACTIVITY
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- biochemically resembles E. cloacae but produces a YELLOW PIGMENT W/C
INTENSIFIES @ 25DEG C; assoc w/ neonatal sepsis and meningitis
SPECIATION OF ENTEROBACTER
LDC + _ + - _
ADH - + + + +
ODC + + - + -
Fermentation of:
Lactose + + V - +
Sucrose + + + - +
Sorbitol + + - - -
Adonitol + V - - -
Urease - V + - -
(strong)
Yellow pigment - - - - +
3. SERRATIA
Opportunists that are unique in their ability to produce the enzymes:
Deoxyribonuclease (Dnase)
Lipase
Gelatinase
Serratia marcescens
– most important species; associated w/ septicemia and pneumonia in
immunosuppressed patients especially those undergoing chemotherapy
Serratia liquefaciens
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– differentiated from S. marcescens by its ability to ferment arabinose
Serratia rubidaea
– also produces a red pigment
Serratia odorifera
– produces a rancid, potato-like odor
4. HAFNIA
Hafnia alvei (formerly Enterobacter alvei) resembles Enterobacter but can be
distinguished by its inability to ferment:
Lactose
Sucrose
Sorbitol
Raffinose
Citrate negative; can be differentiated from Serratia because it is Dnase and lipase
negative
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5. PANTOEA
Pantoea agglomerans (formerly Enterobacter agglomerans) has been isolated from
contaminated IV fluids in an outbreak of septicemia in the early 70’s
SUMMARY OF REACTIONS
PROTEEAE
Proteus
Providencia
Morganella
1. PROTEUS
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– Found in soil, water, and fecally contaminated objects
– This genus is characterized by its RAPID UREASE ACTIVITY and its typical
SWARMING MOTILITY on BAP.
Proteus mirabilis
– most frequently isolated human pathogen; associated w/ wound infections and
UTIs; cause of septicemia and pneumonia
Indole negative
Susceptible to both ampicillin and cephalosporin
Proteus vulgaris
– associated w/ similar infections as P. mirabilis but are often nosocomial and
affect immunosuppressed pxs and those in prolonged antibiotic therapy.
Indole positive
Resistant to ampicillin and cephalosporin
Proteus penneri
– resembles P. vulgaris but it is H2S, salicin and indole negative;
– it is the only indole negative Proteus spp
– resistant to chloramphenicol.
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2. PROVIDENCIA
– Lactose negative, deaminase positive, H2S negative, motile members of Proteeae
– Ferment mannose; they do not swarm on BAP; most are citrate positive
Providencia rettgeri
- the only urease positive Providencia species;
- associated w/ nosocomial infections of UT and skin;
- UTIs caused often involve patients w/ predisposing urological problems;
- skin infections are usually seen in burn pateints
Providencia stuartii
– rare human pathogen, also associated w/ UTIs
3. MORGANELLA
Morganella morganii
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- is the only species w/in this genus; they are negative to the ff reactions:
Lactose
Citrate
H2S
LDC
- Deaminase positive
- Infections are nosocomial (UTIs and wound infections)
- Infections are also seen in patients in prolonged antibiotic therapy
Citrobacteriaceae
Edwardsiella
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– Has been isolated from the environment; and from many cold- and warm-
blooded animals (reptiles, fish, frog and turtles)
Edwardsiella tarda
- most imptortant human spp in this genus; identified as the cause of GI infection
mainly in the tropics and sub-tropics; wound infections and abscesses, frequently
w/ trauma or accidents involving aquatic environment
Klebsiella granulomatis
- Formerly known as Calymmatobacterium granulomatis
DONOVAN bodies
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- groups of organism seen w/in mononuclear Abs; orgs stain as blue rods w/
prominent polar granules surrounded by a large, pink capsule
PENILE DONOVANOSIS
- painless “beefy red” ulcers on penis
General Characteristics
Gram (-) bacilli, Oxidase (+), glucose fermenter
Facultative anaerobes
“curved” rods in initial Gram stain but are straight and can be highly pleomorphic
All are halophilic except Vibrio cholerae and Vibrio mimicus
Epidemiology
Water
- brackish or marine water for Vibrio;
- fresh water for Aeromonas, Plesiomonas shigelloides and Chromobacterium
violaceum
Ingestion of contaminated seafood and water; entry to open wounds and mucosal
surfaces; fecal-oral routes
VIBRIO
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Clinically significant Vibrio species:
Vibrio cholerae (subgroup 01)
Vibrio parahaemolyticus
Vibrio vulnifucus
Vibrio mimicus
Vibrio alginolyticus
Vibrio fluvialis and Vibrio furnissi
Antigenic Structure
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CHOLERA:
- profuse watery diarrhea (“rice water” stool: fluids and mucous flecks)
leading to dehydration, hypotension and often death; can be an epidemic
or pandemic in scope (7 pandemics)
Cholera toxin, Zot Toxin, Ace Toxin, O1 and O139 somatic Ags,
hemolysins/cytotoxins, motility, chemotaxis, mucinase and pili
Laboratory Diagnosis
Collection and Transport
Direct Detection
V. cholerae in stool – ELISA or latex agglutination test
V. cholerae are straight or slightly curved rods; when examined in dark-field, it
exhibits RAPID DARTING or SHOOTING STAR MOTILITY
Cultivation
TCBS (thiosulfate citrate bile salts) – yellow or green colonies
Alkaline peptone water – enrichment for stool samples; after inoculation, broth is
incubated for 5-8 hrs at 35 deg C and then subcultured to TCBS
Vibrio Tests
STRING TEST – used to separate Vibrio from Aeromonas and P. shigelloides;
orgs are emulsified in 0.5% Na desoxycholate w/c lyses the vibrio cells, but not
those of Aeromonas and Plesiomonas.
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With cell lysis there is release of DNA, w/c can then be pulled up into a string
using an inoculating loop
VIBRIOSTATIC TEST
– using 0/129 (2,4-diamino-6,7-diisopropylpteridine) impreganted disks:
Vibrios (susceptible)
Other oxidase positive, glucose fermenters (resistant);
Chromobacterium violaceum
Motile, facultative anaerobe, oxidase (+)
It is found in soil and water
Uniqueness: ability to produce violacein (purple pigment)
Plesiomonas shigelloides
An important causative agent of gastritis in Japan, in the tropics and
subtropics
Organism is carried on various cold-blooded animals; found in water & soil
Infection is acquired through ingestion of contaminated/unwashed foods
Grows on BAP, MAC and EMB
Differentiated from Enterobacteriaceae by a (+) oxidase rxn
Aeromonas
Aeromonas are oxidase (+), Gram (-) bacilli, most are motile (polar
monotrichous flagella)
Naturally found in fresh and sea water and are known to cause infection in
cold-blooded animals
Also found in drains, sink traps, distilled water and tap water
Can grow in BAP, MaC, EMB, SSA and CIN
Can be differentiated from Pseudomonas aeruginosa by their ability to
ferment glucose and produce indole
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Aeromonas hydrophila
Most common isolate; “water loving”
Often associated w/ gastrointestinal disease
Produces a heat-labile enterotoxin and heat stable cytotoxic enterotoxin
Produces protease, lipase and nuclease
Miscellaneous
Gram Negative Bacilli
Campylobacter, Helicobacter,
Legionella, Bordetella, Brucella,
Pasteurella, Francisella, Streptobacillus
CAMPYLOBACTER
General Characteristics
Small, curved, motile, gram (-) rods
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Slow growing and fastidious since it is microaerophilic and capnophilic
Oxidase (+) and nonfermentative (asaccharolytic)
Often associated w/ gastroenteritis and diarrhea
Campylobacter jejuni
- Single flagellum; w/ characteristic darting motility
Spectrum of Disease
Gastrointestinal infections
Self-limiting (no need for antimicrobial therapy)
Stool characteristically contains segmented neutrophils and rbcs
Severe form may lead to intestinal bleeding that mimics inflammatory bowel
disease
Extraintestinal infections
Meningitis, endocarditis and septic arthritis
GUILLAIN-BARRE’ SYNDROME – acute demyelination (removal of myelin
sheath) of peripheral nerves
Virulence factors:
Cytotoxin, Cytotonic factor and Enterotoxin
Campylobacter jejuni
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C. jejuni subspecies jejuni
C. jejuni subspecies doylei
Campylobacter coli
2nd most isolated Campylobacter species
Campylobacter fetus
causes infective abortion in cattle and sheep
Can cause extraintestinal infections in immunocompromised pxs
Laboratory Diagnosis
Specimens
Feces, rectal swab, blood
Shd be transported in Cary-Blair medium if there will be more than 2hrs
delay – processed immediately/or stored @ 4deg C
Direct Detection/Microscopy
Char morphology: S- shaped, spiral, seagull-winged, faintly staining gram (-)
Wet mount (from colonies growing on selective media) – darting motility
In Gram’s - safranin O is used as final stain
Stool
– Modified Skirrow’s: Columbia blood agar base, 7% horse lysed blood and
antibiotics (vancomycin, trimethroprim and polymyxin B) @ 42deg C under
microaerophilic condition for 72 hrs
– Campy-BAP: Brucella agar base w/ antibiotics (trimethoprim, polymyxin B,
cephalothin, vancomycin and amphotericin B) and 10% sheep blood @ 42deg C
under microaerophilic condition for 72 hrs
Blood
– Septicemia; 2 weeks for growth
– Chocolate blood agar incubated @ 37deg C in a CO2 enriched,
– microaerophilic environment
Incubation condition:
37deg C; 42-43deg C,
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microaerophilic, capnophilic environment of 85% nitrogen, 5% oxygen and
10% CO2
AST
Not routinely performed but are susceptible to
Macrolides
Tetracyclines
Aminoglycosides
Quinolones
Erythromycin – drug of choice for severe gastroenteritis
Helicobacter pylori
General Characteristics
Previous name: Campylobacter pylori
Differentiated fr C. jejuni by its 4-6 polar flagella and its strong UREASE activity
Curved (helical), microaerophilic, capnophilic, prefers increased humidity
Catalase (+), oxidase (+), gram(-) rods resembling C. jejuni
Colonize human stomachs; can thrive the highly acidic environment of the
stomach
Strongly associated w/ duodenal and peptic ulcers
Epidemiology
Primary habitat – human gastric mucosa particularly in mucus secreting cells
MOT: Oral – oral; Fecal – oral; Vertical
Has been isolated from feces, dental plaque
Pathogenesis
Colonizes the antrum & fundus of the stomach but does not invade the epithelium
Motility allows H. pylori to escape stomach’s acidity and burrow and colonize the
gastric mucosa
Urease plays a significant role in H. pylori’s growth and survival in the stomach by
creating an alkaline microenvironment
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Other virulence factors:
– adhesins (colonization);
– mediators of inflammation;
– vacuolating cytotoxin (damages host cells)
Laboratory Diagnosis
Direct Detection
– Biopsy specimens are stained w/ Warthin-Starry or other silver stain; Giemsa
– Squash preparations of biopsy specimen can be Gram stained
– 0.1% basic fuchsin enhances morphology
Presumptive test
– From biopsy: small portion of the processed tissue is placed directly into urease
broth or prepared kit (+) result.indicates presence of H. pylori
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Cultivation
HAEMOPHILUS
Organisms to be Considered:
Haemophilus influenzae
Haemophilus influenzae biogroup aegyptius
Haemophilus aegyptius
Haemophilus ducreyi
Haemophilus haemolyticus
Haemophilus parainfluenzae
Others
H. parahaemolyticus
H. aphrophilus
H. segnisH. Paraphrophilus
General Characteristics
Tiny Gram (-) coccobacilli (can be pleomorphic) that are nonmotile and non-
spore forming
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Incubation requires 5-10% CO2 (capnophilic)
Haemophilus means “blood loving”, hence, spp require particular iron containing
Many spp are considered as NF of the mucous membranes of the URT and oral cavity
Epidemiology
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Among H. influenzae strains, there are 2 broad categories:
TYPEABLE
– strains are typed based on capsule (w/c is made up of a sugar-alcohol PO4 like
polyribitol PO4)
– Differences in this complex serve as the bases for separating encapsulated strains
infections
NONTYPEABLE
– No capsule formation
Pathogenesis
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H. aphrophilus
- is an uncommon cause of endocarditis and is the H member of HACEK group of
bacteria associated with slowly progressive (subacute) bacterial endocarditis
HACEK
Haemophilus aphrophilus
Actinobacillus actinomycetemcomitans
Cardiobacterium hominis
Eikenella corrodens
Kingella spp
New genus of H. aphrophilus and A. actinomycetemcomitans is Aggregatibacter
Haemophilus influenzae
Latex agglutination
Capsular swelling
Immunofluorescence
Carried as normal flora of the URT; nonencapsulated form, not virulent while
ENCAPSULATED STRAINS ARE PATHOGENIC AND PRODUCE RAPID, DEVASTATING
DISEASE IN CHILDREN LESS THAN 3Y/O (children do not develop Abs until 2-3yrs of
age)
Spectrum of disease
Epiglottitis (2-4y/o)
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Adults who develop H. influenzae meningitis may have a predisposing condition:
Chronic sinus infection
Alcoholism
Head trauma
Diabetes
Ear infections
Heart valve disease
Non-encapsulated
Mortality rate may reach as high as 70% within 48 hours after onset
Haemophilus aegyptius
Haemophilus ducreyi
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Appears as tiny gram (-) rods (intracellular to polymorphonuclear neutrophils) on
direct examination of the genital ulcer; resembles “school of fish”
H. haemolyticus
- Occasional normal flora of the URT
- Requires both X and V factors
- Shows a wide zone of beta-hemolysis on horse blood agar
- Maybe mistaken for Grp A Streptococcus on BAP; perform gram stain to
differentiate
H. parainfluenzae
- Normal flora of the URT
- Rarely infectious and requires only the V factor
LABORATORY DIAGNOSIS
Specimen type for H. influenzae is dictated by the type of infection. Possible sites include:
o Blood o Infected joint fluid
o CSF o Nasopharyngeal swabs
o Middle ear aspirate o Eye swabs
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Isolation/Cultivation
Sheep BAP IS NOT adequate to isolate Haemophilus spp because of the
requirement of NAD. Sheep rbcs release NADase w/c inactivates NAD.
Horse or rabbit BAP can be used since neither contains NADase (but these
media are not usually maintained in the lab); preferred isolating medium then is
CHOCOLATE AGAR
Chocolate agar
1. Staph streak
culture suspected w/ Haemophilus is streaked heavily onto a sheep BAP
A single streak of beta-hemolytic S. aureus is streaked through the inoculum
Requirements are met since S. aureus synthesize NAD and hemolysis
releases hemin; X and V factors are present
Haemophilus spp appear as tiny “satellite” colonies around Staphylococcus
aureus after incubation (satelliting phenomenon)
3. Levinthal agar
Clear medium containing X and V factors and growth factors
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Encapsulated colonies of H. influenzae appear iridescent when viewed w/ an
oblique light
Nonencapsulated colonies appear transparent, bluish and noniridescent
Identification
1. Staphylococcus streak
2. ALA
3. X and V Factors
4. Haemophilus ID Quad Plates
RESULT:
X AND V FACTORS
Purpose: To speciate Haemophilus based on their specific growth requirements
for X and V factors
Media/Reagents: Mueller-Hinton Agar (MHA); BHI/TSB; X and V factors filter paper disks
Filter paper w/ X factor and filter paper w/ V factor are placed on MHA
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RESULT and INTERPRETATION:
Growth about X factor and XV – X factor is required
Growth about V factor and XV – V factor is required
Growth about XV – both X and V factors are required
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Interpretation:
Interpret for visible growth and hemolysis
Organism should grow in Quadrants III and IV
Read Quadrant IV for hemolysis
Quadrant I – X
Quadrant II – V
Quadrant III – X and V
Quadrant IV – X and V and hemolysis
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Gram Stain
Acridine orange stain (AO) is used to detect smaller numbers of organisms
To increase sensitivity of GS esp of CSF, specimens are centrifuged (2000 rpm for
10 mins); fivefold to tenfold increased GS sensitivity; or cytocentrifugation
100 fold increased GS sensitivity
Incubation
Can grow aerobically or anaerobically
Growth is stimulated by 5% - 10% CO2 so that incubation in a candle extinction jar,
CO2 pouch, or CO2 incubator is recommended
H. ducreyi may require up to 7 days for growth
Optimal growth except for H. ducreyi is 35-37 deg C.H ducreyi at 33 deg C plus
high humidity (accomplished by placing a sterile gauze moistened w/ sterile water
inside candle jar or CO2 pouch)
AST
H. influenzae – ampicillin (drug of choice); but if w/ resistance, give
chloramphenicol; ceftriaxone/cefotaxime
H. ducreyi – erythromycin
Other H spp - ceftriaxone/cefotaxime
Prevention
Vaccine for H. influenzae type B – mutiple –dose CHON-polysaccharide
Rifampicin as prophylaxis for H. influenzae type b meningitis
PRP (purified polyribosyl ribitol PO4) – 1st vaccine for H. influenzae, 1985.
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