This document provides an overview of Step 5 in using the AFAM Toolkit, which is to perform assessment methods using the AFAM Toolkit Dashboard. It describes the various types of data that can be analyzed, including length data, catch and effort data, and underwater visual survey data. For each data type, it lists the specific assessment methods that are included, such as fishing mortality from mean length, catch curves, spawning potential ratio, trends in catch, and fished/unfished biomass ratios. It instructs users to first visualize the data, select reference periods or years, and then use the dashboard to automatically calculate performance indicators and compare them to reference points for each assessment method. Users are then asked to perform assessments using
This document provides an overview of Step 5 in using the AFAM Toolkit, which is to perform assessment methods using the AFAM Toolkit Dashboard. It describes the various types of data that can be analyzed, including length data, catch and effort data, and underwater visual survey data. For each data type, it lists the specific assessment methods that are included, such as fishing mortality from mean length, catch curves, spawning potential ratio, trends in catch, and fished/unfished biomass ratios. It instructs users to first visualize the data, select reference periods or years, and then use the dashboard to automatically calculate performance indicators and compare them to reference points for each assessment method. Users are then asked to perform assessments using
This document provides an overview of Step 5 in using the AFAM Toolkit, which is to perform assessment methods using the AFAM Toolkit Dashboard. It describes the various types of data that can be analyzed, including length data, catch and effort data, and underwater visual survey data. For each data type, it lists the specific assessment methods that are included, such as fishing mortality from mean length, catch curves, spawning potential ratio, trends in catch, and fished/unfished biomass ratios. It instructs users to first visualize the data, select reference periods or years, and then use the dashboard to automatically calculate performance indicators and compare them to reference points for each assessment method. Users are then asked to perform assessments using
Road map for this session • Presenta7on – Importance of data visualiza7on and analysis – AFAM Toolkit Dashboard walk-through • Breakout group ac7vity – Using AFAM Toolkit Dashboard, perform data- limited methods for your site Importance of data explora7on/visualiza7on • BeJer understand your data • Spot and remove outliers • Understand if there are common measurement errors • Quick, “back-of-the-envelope” analysis • Understand how different gear types affect fishery • Important first step before performing data- limited stock assessments Methods included in AFAM • Length data • Fishing mortality from Mean length (LBAR) • Fishing mortality from Catch curve • Spawning poten7al ra7o • Froese sustainability indicators • Catch and effort data • Trends in catch • Trends in CPUE • Underwater visual survey data • Fished:unfished biomass ra7o (coral reef ecosystem indicator) • Fished:unfished density ra7o (starget species indicator) AFAM Toolkit Dashboard • Used for performing all assessment methods • Can be used online • Can also be used offline – Need to install R on your computer and also the AFAM package: instruc7ons • Automa7cally calculates all performance indicators following some basic inputs Length data • First, enter life history informa7on • Next, simply visualize data and select gear and year for analysis • Then, turn to assessment methods Fishing Mortality from Average Length (LBAR) • Dashboard calculates performance indicator automa7cally, and compares it with reference points Fishing Mortality from Catch Curve Spawning Poten7al Ra7o (SPR) Froese Sustainability Indicators Catch and CPUE data • First, simply visualize data • Next, select the reference period over which the catch and/ or CPUE reference values should be calculated. This 7me period should represent a desirable fishery condi7on. • Then, turn to assessment methods Trends in Catch • Dashboard calculates performance indicator automa7cally, and compares it with reference points Trends in CPUE Underwater visual survey data • First, simply visualize data • Next, enter year for analysis • Then, turn to assessment methods Fished:unfished biomass ra7o • Dashboard calculates performance indicator automa7cally, and compares it with reference points Fished:unfished density ra7o Group Breakout Ac7vity • Using AFAM Guidance Document, look through instruc7ons and references for Step 5