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Drug Metabolism
Hugo Kubinyi
Germany
E-Mail kubinyi@t-online.de
HomePage www.kubinyi.de
the action
Metabolism of the body
on the drug
Hugo Kubinyi, www.kubinyi.de
Drug Metabolism
For the elimination of xenobiotics, mainly in the liver.
- oxidations, reductions and hydrolyses
(phase I reactions), and
- conjugations with small molecules (phase II reactions).
- drug elimination by transporters is sometimes defined as
phase III reaction.
Cl Cl Cl Cl
DDT DDE (antiandrogenic)
Metabolism of Propranolol
O N O NH2
H
OH OH
OMe
O OH O COOH
OH (mostly OH
4-OH)
and their glucuronide and sulfate conjugates
Hugo Kubinyi, www.kubinyi.de
Metabolism of Bromobenzene
spontaneous covalent binding
conjugation to macromolecules
Br CYP450, Br
NADPH Br
O2
rearrangement
O
Br
glutathione OH Br
epoxide
hydratase S-transferase
OH Br OH
OH
S
Br -2H 1) elimination of
Gly and Glu
OH 2) acetyl AcNH COOH
S-Cys-Gly transferase
OH "mercapturic acid
Glu conjugate"
OH
OEt CH3CHO
P450 OH
paracetamol
O
OEt (acetaminophen;
N CH3 NH2 active metabolite)
N-hydroxy-
and quinone
metabolites phenetidine
(hepato- and (methemoglobin
nephrotoxic) O toxification OEt formation)
Hugo Kubinyi, www.kubinyi.de
O
Mode of Action of Acetaminophen
HN NH2 arachidonic acid O
OH
+
OH OH
p-amino- fatty acid amido
paracetamol hydrolase (FAAH)
(acetaminophen) phenol
OH
O
E. D. Högestätt et al.,
N
H J. Biol. Chem. 280,
31405-31412 (2005)
HO R CH3O R catecholamines
(catechol-O-methyl
HO HO transferase)
UGT = uridine
diphosphate
glucuronyl
transferase
CL = metabolic
clearance
F Me *
CF3 CF3
N N N N
CH3SO2 H2NSO2
NH NH
F F
6 6
* N
H
F N
H
*
OMe F
Ezetimib (SCH 58235, oral
SCH 48461 cholesterol absorption inhibitor)
ED50 (hamster) = 2.2 mg/kg ED50 (hamster) = 0.04 mg/kg
HO C O
Lovastatin C
brown = labile
C O
O C red = moderately
C C labile
C C O C
2% H green = modera-
C 2%
4% C C C tely stable
C C C 20%
49% blue = stable
15% C
C
C C C OH
C
C C C C C C C
C C C C
C C C C C C
C C N C C C C C
C C C C
O NH2 O C C
Carbamazepine Testosterone
AM1 hydrogen abstraction energies + accessible surface.
Red = accessible, low energy; blue = high energy;
red arrows = predicted sites, blue arrows = experimental
sites of CYP 3A4 metabolism.
S. B. Singh et al., J. Med. Chem. 46, 1330-1336 (2003)
Hugo Kubinyi, www.kubinyi.de
3D Model of
human CYP 1A2
N.V. Belkina,
V. S. Skvortsov,
A. S. Ivanov
www.imbh.msk.su
3D structures of the
most important
hCYPs are already
elucidated by protein
crystallography
(T. Blundell, Astex)
Hugo Kubinyi, www.kubinyi.de
green:
NADP-oxido-
reductase
domain
blue: heme
domain
I. F. Sevrioukova et al.,
Proc. Natl. Acad. Sci.
USA 96, 1863-1868 (1999)
Cofactors:
flavine adenine
dinucleotide (FAD)
flavine mononucleo-
tide (FMN)
nicotine adenine
dinucleotide
(NADP)
Hugo Kubinyi, www.kubinyi.de
Binding Mode
of (S)-Warfarin
to h CYP 2C9
P. A. Williams
et al., Nature 424,
464-468 (2003)
1w0g
P. A. Williams et al.,
Science 305,
683-686 (2004)
Hugo Kubinyi, www.kubinyi.de
IC50 erythromycin
N-demethylation
"
N
OH
H increases
plasma
levels by a
factor 5-6
(propa-
fenone
is a CYP 2D6
inhibitor)
terfenadine
(Seldane®), OH
R = CH3: polar N
H1 antagonist
R
(originally OH
designed as an CH3
antipsychotic CH3
agent; no sedative side effect but cardiotoxic,
especially in combination with CYP 3A4 inhibitors)
fexofenadine (Allegra®), R = COOH: active terfenadine
metabolite (no sedative side effect, no cardiotoxicity)
wild type
mPXR+
transgenic
mPXR+, hPXR+
transgenic k.o.
mPXR-, hPXR+
in Caucasian population:
90% extensive metabolizers (EM)
10% poor metabolizers (PM)
EM PM
Hugo Kubinyi, www.kubinyi.de
References
Burger‘s Medicinal Chemistry and Drug Discovery, 6th Edition,
D. Abraham, Ed., Wiley, New York, 2003.
E. Mutschler and H. Derendorf, Drug Actions: Basic Principles and
Therapeutic Aspects, CRC Press, 1995 (in German: E. Mutschler
et al., Arzneimittelwirkungen, Wiss. VerlagsGmbH, Stuttgart, 2001).
C. T. Dollery, Therapeutic Drugs, 2nd edition, Churchill Livingstone,
Edinburgh, 1999.
T. F. Woolf, Handbook of Drug Metabolism, Marcel Dekker, New York,
1999.
D. Hawkins, Biotransformations: A Survey of the Biotransformations
of Drugs and Chemicals in Animals, 7 volumes, Royal Society of
Chemistry, London, 1989-1996.
B. Testa, Biochemistry of Redox Reactions (Metabolism of Drugs
and Other Xenobiotics), Academic Press, New York, 1995.
D. A. Smith, H. van de Waterbeemd and D. K. Walker, Pharmacokine-
tics and Metabolism in Drug Design, Wiley-VCH, Weinheim, 2001.
B. Testa and J. Mayer, Hydrolysis in Drug and Prodrug Metabolism,
Wiley, New York, 2003
WebSites
R. A. McKinnon and A. M. Evans, Cytochrome P450, parts 1-3,
Aust. J. Hosp. Pharm. 30, 54-56; 102-105; 146-149 (2000).
(www.shpa.org.au/journal/P450.htm)
Cytochrome P450
(www.anaesthetist.com/physiol/basics/metabol/cyp/cyp.htm)
Gentest Human P450 Metabolism Database
(www.gentest.com/human_p450_database/index.html)
Aspet Division for Drug Metabolism / Cytochrome P450
(www.aspet.org/public/divisions/drugmetab/
cytochrome_p450.htm)
Cytochrome P450 Allele Nomenclature Committee
(www.imm.ki.se/CYPalleles)
CYP 450 Drug Interactions (http://medicine.iupui.edu/flockhart)
CYP 450 Gene Databases
(http://drnelson.utmem.edu/Databases.html)
Brookhaven Protein Database
(www.rscb.org/pdb or www.biochem.ucl.ac.uk/bsm/pdbsum)