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Syllabus
* 15 weeks:
Week 1 – 5: General chemistry: atomic, molecular structure, bonds, chemical kinetics, solutions (pH, buffer,
titration); and analytical chemistry: analytical techniques for medicine applications
Week 6 – 12: Organic chemistry: introduction to different groups of organic compounds, proteins, enzymes.
Week 13- 15: Nuclear chemistry: application of nuclear radiation in medicine
Assessment (% mark):
Mid-term exam: 30 %
Lab practicum report: 30 %
Final exam: 40 %
CONTENTS
• Matter consists of
pure substances and
mixture
• Pure substance: a
single component and
has constant
composition
• Mixture: composed
by more than one
component. Can be
different depending
on the sample
13
Element and compound – nguyen to & hop chat
- A compound is a
pure substance
formed by chemically
combining (joining
together) two
or more elements.
Classification of matter
Measurement unit
§ In the United States, most measurements are made with the English system, using
units like miles (mi), gallons (gal), pounds (lb), and so forth. A disadvantage of this
system is that the units are not systematically related to each other and require
memorization. For example, 1 lb = 16 oz, 1 gal = 4 qt, and 1 mi = 5,280 ft.
§ Scientists, health professionals, and people in most other countries use the metric
system, with units like meter (m) for length, gram (g) for mass, and liter (L) for
volume.
In 1960, the International System of Units was formally adopted as the
uniform system of units for the sciences. SI units, as they are called, are based
on the metric system, but the system encourages the use of some metric units
over others. SI stands for the French words, Système Internationale.
Atom and Periodic Table – bảng tuần hoàn
Element: a pure substance that cannot broken down into simpler substances
by a chemical reaction; and is identified by a symbol (with one or two letter)
Example: well known element: Oxygen, nitrogen: composition of the air;
Aluminum (Al); Zinc (Zn) in soft drink can; Gold (Au), Silver (Ag): precious
metals in jewelry …
Not well known: Th, Ir, rare earth element
Common elements and their symbol
The Periodic Table
Groups of elements have similar properties, and that these elements could be arranged in a schematic way called the periodic
table . The position of an element in the periodic table tells us much about its chemical properties.
The elements in the periodic table are divided into three groups—metals, nonmetals, and metalloids.
The solid line that begins with boron (B) and angles in steps down to astatine (At) marks the three regions corresponding to
these groups. All metals are located to the left of the line. All nonmetals except hydrogen are located to the right. Metalloids
are located along the steps.
Both protons and neutrons contribute to the mass of an atom. The mass
number, symbolized by
A, is the sum of the number of protons and neutrons.
Mass number (A) = the number of protons (Z) + the number of neutrons
Practical knowledge: building block elements of caffeine –
a common stimulants in tea, coffee, beverages
Some elements like fluorine occur naturally as a single isotope. More commonly, an element is a mixture of
isotopes, and it is useful to know the average mass, called the atomic weight (or atomic mass), of the atoms in
a sample.
The atomic weight is the weighted average of the mass of the naturally occurring
isotopes of a particular element reported in atomic mass units.
The atomic weights of the elements are usually given under the element symbol in the Periodic table
Example: determine atomic weight of Cl.
- List each isotope, along with its mass in atomic mass units (amu) and the percentage that each isotope occurs in
nature. Chlorine has two isotopes—Cl-35 and Cl-37.
To determine the Cl atomic weight, the masses and abundances of its isotopes must be known.
Multiply the isotopic abundance by the mass of each isotope, and add
up the products. The sum is the atomic
weight for the element.
Mass due to Cl-35: 0.7578 × 34.97 amu = 26.5003 amu
Mass due to Cl-37: 0.2422 × 36.97 amu = 8.9541 amu
Atomic weight = 26.5003 + 8.9541 = 35.4544 amu rounded to 35.45 amu
Example: Calculate atomic weight of Mg
Features of Periodic Table
The periodic table is arranged into seven horizontal rows and 18 vertical columns. The particular
row and column tell us much about the properties of an element.
A row in the periodic table is called a period. Elements in the same row are similar in size.
A column in the periodic table is called a group. Elements in the same group have similar electronic and
chemical properties.
The main group elements consist of the two columns on the far left and the six columns on the far right of
the table. These groups are numbered 1A–8A.
The transition metal elements are contained in the 10 short columns in the middle of the table, numbered
1B–8B.
The inner transition elements consist of the lanthanides and actinides, and they are not assigned group
numbers.
• Each element of the
periodic table is part of a
horizontal row and a
vertical column.
• The periodic table consists
of seven rows, labeled
periods 1–7, and 18
columns that are assigned
a group number.
• Elements are divided into
three categories: main
group elements (groups
1A–8A, shown in light
blue), transition metals
(groups1B–8B, shown in
tan), and inner transition
metals (shown in light
green).
Example: size of the atom
In a row: Atom’s size decreases across a row when protons number increases
In a column: The size of atoms increases down a column of the periodic table
Structure of electron
Why do elements in a group of the periodic table have similar chemical properties? The chemistry of an element is
determined by the number of electrons in an atom. To understand the properties of an element, therefore, we must learn
more about the electrons that surround the nucleus
Electrons do not move freely in space; rather, an electron is confined to a specific region, giving it a
particular energy.
Electrons occupy discrete energy levels. The energy of electrons is quantized; that is, the energy is
restricted to specific values.
The electrons that surround a nucleus are confined to regions called the principal energy levels,
or shells.
The shells are numbered, n = 1, 2, 3, 4, …. , beginning closest to the nucleus.
Electrons closer to the nucleus are held more tightly and are lower in energy.
Electrons farther from the nucleus are held less tightly and are higher in energy.
Structure of electron
In any atom, the electrons are arranged in definite layers, starting from the nucleus and proceeding outward.
These layers are regions within which the electrons move randomly and unpredictably. The layer are called
electron shells or energy levels.
Practical knowledge: elements of life (human body)
It takes 20 elements
to build a human body, although several
other elements are
present without having any apparent
function. Of these 20 essential
elements, four of them (carbon, oxygen,
hydrogen, and nitrogen)
make up 96% of the mass and 99% of the
atoms.
-The seven most common elements
(oxygen, carbon, hydrogen, nitrogen,
calcium, phosphorus, and sulfur)
are structural elements.
-The next three elements (potassium,
sodium, and chlorine) are electrolytes,
elements that form ions and that are always
dissolved in water, giving our body fluids
their correct properties.
-The remaining are trace elements having
different functions
Chemical bonds – Liên kết hóa học
How and why elements form compounds.
How atoms of different elements bond to one another in a compound and How the different
types of bonds lead to different properties. There are number of chemical bonds :
-Covalent bonds
-Double and triple bonds
-Electronegativity and polar bons
-Ions and ionic compounds
When two atoms share a pair of electrons, the shared electrons
are called a bonding electron pair. This pair of electrons forms
a powerful bond between the two atoms, called a covalent
bond
We can use Lewis structures to represent the formation of a
covalent bond. Lewis structures allow us to keep track of the
valence electrons around each atom. For a covalent bond, the
two electrons in the bonding pair are drawn side by side, as an
Example of F shown here. The two or more atoms are linked by
Covalent bonds, and the group of atoms call a molecular.
Bonds and molecular
HF
When an electron moves from sodium to chlorine, the sodium becomes a positive ion (a cation) and the chlorine becomes a
negative ion (an anion). These two ions attract each other, because they have opposite charges, and the attraction binds the
ions together into a compound. A compound that is made from positively and negatively charged ions is called an ionic
compound. When we write the formula of an ionic compound, list the cation first, followed by the anion, so the formula of
the salt is written NaCl. The formula of an ionic compound does not include the charges on the individual ions.
The ammonium ion (NH4+) is a positively charged polyatomic ion. The ammonium ion is related to the
covalent compound NH3 (ammonia), but it contains a nitrogen atom and four hydrogen atoms. One
electron has been removed to produce the 1 charge. Above figure shows the formation of NH4+
How to recognize molecular and ionic compounds
Three guidelines to classify compounds based on their formulas:
1. Compounds that contain a metallic element are usually ionic.
Examples: CaO, Fe(NO3)3, NaC2H3O2
2. Compounds that contain only nonmetals are usually molecular.
Examples: CO2, H2SO4, CH3OH, C3H5(NO3)3
3. Compounds that contain the NH4 group are ionic. (This is the important exception to guideline 2).
Examples: NH4Cl, (NH4)3PO4
Practical knowledge: Nitrogen N and Oxygen compounds
& air pollutants
- Nitrogen dioxide (NO2) is a red–brown, acrid-smelling,
poisonous gas that is a major component of the smog that
forms over urban areas in the summer. NO2 is formed during
the decomposition of organic matter by bacteria. The major
sources of this gas are the engines of automobiles and other
transportation vehicles, power plants that use coal and natural
gas to produce electricity.
- NO2 is highly irritating to the lungs and can trigger asthma
attacks. In addition, NO2 dissolves in rainwater and forms nitric
acid, HNO3, a strong and very corrosive acid. Acidic rainwater is
toxic to most aquatic animals and plants and can even dissolve
some types of rock, including the limestone and marble that
are used to make buildings and statues.
Nitric oxide (NO), a colorless, poisonous gas with a remarkable history. This
compound is actually the first product formed when nitrogen and
oxygen combine at high temperatures, but it reacts almost instantly
with oxygen to form NO2, so the actual concentration of NO in the
atmosphere is negligible
In class questions
Carbon-11 is an unnatural isotope used in positron emission tomography (PET) scans. PET
scans are used to monitor brain activity and diagnose dementia. How does carbon-11 compare
to carbon-12 in terms of the number of protons, neutrons, and electrons? Write the element
symbol of carbon-11 using superscripts and subscripts.
11
6 C
In class questions
Strontium-90 is a radioactive element formed in nuclear reactors. When an unusually high level of
strontium is released into the air, such as occurred during the Chernobyl nuclear disaster in 1986, the
strontium can be incorporated into the bones of exposed individuals. High levels of strontium can cause
bone cancer and leukemia. Why does Sr-90 cause this particular health problem?
1) Chemical equilibria:
b. Equilibrium constant – hằng số cân bằng
c. Manipulate equilibrium constant – tính hằng số cân bằng
2) Le Chatelier’s principle – Nguyên lý Le Chatelier
LEARNING OUTCOMES
• 1. Janice G. Smith. General, Organic and Biological Chemistry. 2010 by The McGraw-
Hill Companies, Inc.
• Part 6.5, from page 173
• Part 9. from page 258
• 2. Từ Vọng Nghi. Hoá học phân tích. Nhà xuất bản Đại học quốc gia Hà nội
• 3. David Harvey. Modern Analytical Chemistry. 2000 by The McGraw-Hill Companies,
Inc
• Part 6, from page 135
• Part 9B, from page 278
Nomenclature – Thuật ngữ
Equilibrium constant K:
K =
[C] ´ [D]
c d
Note : Concentration of
[A ] ´ [B]
a b subtances when reaction
reached equilibrium
• For the gaseous reaction, K can be alternatively represented in the term of
partial pressure
PC ´ PD
c d Note : partial pressure of
Kp = a b subtances when reaction
PA ´ PB reached equilibrium
Manipulating equilibrium constants
• Adding reactions:
Equilibrium Constants for Heterogeneous Equilibria
61
Example: write the formula of K constant for the following equilibria
Equilibrium Constant Expressions
K = [Ba+2]•[SO4-2]
• CH4(g) + 2 O2(g) Û CO2(g) + 2 H2O(l)
[CO2]
K = [CH4]•[O2]2 Kp ?
Disturbing and Re-Establishing Equilibrium
• When the value of Keq > > 1, we know that when the reaction
reaches equilibrium, there will be many more product molecules
present than reactant molecules.
• The position of equilibrium favors products.
• When the value of Keq < < 1, we know that when the reaction
reaches equilibrium, there will be many more reactant molecules
present than product molecules.
• The position of equilibrium favors reactants.
67
2. Le Chatelier’s principle
• Le Châtelier’s principle guides us in predicting the effect on the
position of equilibrium when conditions change.
• “If a change is imposed on a system at equilibrium, the position of
equilibrium will shifts to a direction that tend to reduce that change.”
l Changing concentration
- Temperate
increase, the
reaction that
remove heat is
favored
- Temperate
decrease, the
reaction that
add heat is
favored
Factor affecting the equilibrium: Pressure change
When pressure increases, equilibrium shifts in the direction that decreases the number of moles in
order to decrease pressure
When pressure decreases, equilibrium shifts in the direction that increases the number
of moles in order to increase pressure
Summary: Table 6.5, page 183
Effects of changes in conditions on equilibrium
Change Effect on equilibrium
Concentration
Adding reactant Equi. favors the products
Removing recant Equi. favors the reactants
Adding product Equi. favors the reactants
Removing product Equi. favors the products
Temperature
Increasing temperature Endothermic reaction: equi. favor the products
Exothermic reaction: equi. favors the reactants
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Problems
Given: 1 g protein or carbohydrate releases 4 Cal; 1 gram fat releases
9 Cal.