Professional Documents
Culture Documents
Genetics Lessons 1 - 6
Genetics Lessons 1 - 6
BIO 2242
GENETICS INTRODUCTION
Definition
Brief History
Areas and Methods of Genetic Study
Applications
DEFINITION
Greek word “gen” – grow into something;
coined by William Bateson (1906)
Deals with principles of heredity and variation in all living organisms
seeks to understand the molecular and physical bases of biological diversity, the
mechanisms resulting from these diversities, and the principles that govern their
heredity from one generation to another
BRIEF HISTORY
Gregor Mendel (1822 – 1884)
• hereditary characteristics were determined by “elementary factors” that are
transmitted between generations in a uniform, predictable fashion
• Results on pea experiments published in 1866 but remained unappreciated until 1900*
* Hieracium sp. – apomictic (maternal inheritance)
OTHER IMPORTANT SCIENTISTS:
- Research on their important contributions to the field of Genetics
1. Carl Correns (Germany); Erick Von Tschermak (Austria); Hugo de Vries (Holland)
(1900)
- rediscoverers of Mendel
1. Classical Genetics
Concerned with the chromosomal theory of inheritance
2. Molecular Genetics
Study of the genetic material: its structure, replication and expression, as well as the
information revolution emanating from the discovery of recombinant DNA techniques
3. Evolutionary Genetics
Study of the mechanisms of evolutionary change, or changes in gene frequencies in
populations
1. Classical Genetics
a. Controlled breeding experiments
• Factors to consider in choice of test organism
i. kinds of variation
ii. Sexual reproduction or system of recombination
iii. Controlled mating
iv. Short generation time
v. Large number of offspring
vi. Convenience of caring
b. Pedigree analysis
Single gene inheritance
Disadvantages:
i. Based on subjective recall
ii. Accuracy of information difficult to test
DIANNA KYLE A TAGALOG BSED - SCI
BIO 2242
iii. Presence of illegitimate children may not be revealed
c. Statistical analyses
- Number of offspring is small or number of generations available is not sufficient
- Use statistical tests to predict probability of occurrence of traits in untried crosses (e.g.
x2 test)
d. Karyotyping
Uses:
i. Determine the normal chromosome number of the species → establishment of new
species
ii. Detection of chromosomal aberrations
- option for “therapeutic abortion”
iii. Determine sex of the individual
e. Twin studies
- Concordance vs. discordance
- Genotype vs. environmental influence on phenotype
2. Molecular Genetics
recombinant DNA technology → began with the discovery of restriction endonucleases
foreign DNA in plasmids introduced in bacterium and replicated → determine base
sequence of foreign DNA
can locate and study disease causing genes (e.g for cystic fibrosis, muscular dystrophy,
resistance genes)
- Somatic Cell Gene Therapy
3. Evolutionary Genetics
Evolution → change in allelic frequencies in a population over time
Electrophoresis and subsequent DNA sequencing → polymorphisms existing within
natural populations
Applications of Genetics
Plant and Animal Improvement
Medicine
Genetic Counseling
Legal Applications
DIANNA KYLE A TAGALOG BSED - SCI
BIO 2242
Mendelian Genetics
Definition of Terms:
• Character - a heritable feature that varies among individuals (e.g. flower color)
• Trait - each variant for a character (e.g. for flower color purple or white)
• True-breeding - when plants self-pollinate, all offspring are of the same kind
• Hybridization - mating or crossing of two varieties
• Monohybrid cross - cross that tracks or monitors the inheritance of a single character
or a pair of contrasting traits
• P or parental generation - true breeding parents
• F1 (first filial generation) - offspring of the cross of P1 and P2
• F2 (second filial generation) - offspring of self-pollinating F1 hybrids or cross pollinated
with similar F1 hybrids
• Homozygous/homozygote - organism having a pair of identical alleles at a given locus
on homologous chromosomes.
• P or parental generation - true breeding parents
• F1 (first filial generation) - offspring of the cross of P1 and P2
• F2 (second filial generation) - offspring of self-pollinating F1 hybrids or cross pollinated
with similar F1 hybrids
• Homozygous/homozygote - organism having a pair of identical alleles at a given locus
on homologous chromosomes.
• Heterozygous/heterozygote - organism having two different alleles at a given locus on
homologous chromosomes.
• Phenotype - the visible expression of information contained in the genes; the
organisms appearance
• Genotype - genetic composition of a cell or organism
• Genes - a nucleotide sequence coding for a polypeptide which may be an enzyme or
part of an enzyme, which in turn is responsible for a certain phenotype.
• Alleles - one of two or more alternative forms of a gene which are usually recognizable
by phenotypes
P1 tall X dwarf
F1 all tall
F2 ¾ tall ¼ dwarf
Phenotypic ratio 3 tall: 1 dwarf
Three Postulates:
1. Unit factors in pairs
• Genetic characters are controlled by unit factors that exist in pairs in individual
organisms
• Pair of unit factors → each comes from one parent/2 parents contribute one unit
factor
• For monohybrid cross involving stem length
3 possible combinations of unit factors:
2 unit factors for tall → TT
2 unit factors for dwarf → tt
One unit factor for each → Tt
2. Dominance/recessiveness
• When two unlike unit factors responsible for a single character are present in a single
individual, one unit factor is dominant to the other which is recessive
Dominant → unit factor that is fully expressed in the organism
Recessive → unit factor that has no noticeable effect on the organism
3. Law of Segregation
• During the formation of gametes, the paired unit factors segregate or separate
randomly so that each gamete receives one or the other
Individual gametes
TT all T
Tt either T or t
tt all t
• Each gamete has a 50% probability of receiving either of the unit factors
• Homozygous - alleles are the same; contains identical paired unit factors or alleles
• Heterozygous - contains different paired unit factors or alleles
Test Cross:
• Know the genotype → can determine the phenotype
• Phenotype - may change resulting from interaction of genotype and environment
• Genotype - remains constant
• Know phenotype → can genotype be determined?
F1 RrYy x RrYy
* F1 males and females form 4 kinds of gametes each based on random
combinations of the two different alleles
* Selfing of the F1 or crossing with a similar F1 will result to 16 possible
combinations of gametes assuming random mating
* 9 resulting genotypes in F2 with a ratio of
1:2:1:2:4:2:1:2:1
* 4 phenotypes in F2 with a ratio of 9:3:3:1
Summary:
Genotypic Ratio:
1 RRYY : 2RRYy: 1RRyy: 2RrYY: 4RrYy: 2Rryy: 1rrYY: 2rrYy: 1rryy
Phenotypic Ratio:
9 Round Yellow Seeded: 3 Round Green Seeded: 3 Wrinkled Yellow Seeded: 1 Wrinkled Green
Seeded
Phenotypic Proportion:
9/16 Round Yellow Seeded 3/16 Round Green Seeded 3/16 Wrinkled Yellow Seeded 1/16
Wrinkled Green Seeded
DIANNA KYLE A TAGALOG BSED - SCI
BIO 2242
Example:
• organism with genotype AaBbCcDDeeFfGg (assuming all genes are in separate
chromosomes)
• Kinds of gametes = (2)(2)(2)(1)(1)(2)(2) = 32
• Pr of each gamete = 1/32
• Mate with AaBbCcDdEeFFGg
• Probability of getting a particular phenotype/genotype among the offspring could be
obtained by considering every combination individually and applying the product rule
of probability
• Pr of getting an offspring with ABcDeFg phenotype = A(3/4) x B(3/4) x c (1/4) x D(1) x
e(1/2) x F(1) x g(1/4) = 9/512
Pascal’s Pyramid:
n Binomial coefficients Total number
of combinations
0 1 1
1 1 1 2
2 1 2 1 4
3 1 3 3 1 8
4 1 4 6 4 1 16
5 1 510 5 1 10 32
6 1 6 15 20 15 6 1 64
7 1 7 21 35 35 21 7 1 128
Example 1 :
combinations of boys and girls for families of a given size may be calculated by the binomial
expansion
• In a family of 4 children which combination of boys and girls will most likely occur?
(p + q)4 = p4 + 4p3q + 6p2q2 + 4pq3 + q4
Answer: 2 boys and 2 girls Pr = (6)(1/2) 2(1/2)2
• If Pr of alternative events are the same, the combination that would most likely occur
would be the combination (term) with highest coefficient.
Use of Factorials:
DIANNA KYLE A TAGALOG BSED - SCI
BIO 2242
When the Pr of only a certain combination of the two alternative events in a given size group
is required, factorials may be used:
P = n! pxq(n-x)
x!(n-x)!
where n! = product of the integers making up the total size of the group
x! = product of the integers for the class with probability p
(n-x)! = product of the integers for the class with probability q
p = probability for one occurrence
q = probability for the other
Example 1:
6 babies born in a given hospital on same day, what is the Pr of 2 boys and 4 girls
P = 6! (1/2)2(1/2)4
2!4!
Same as 15(1/2)2(1/2)4 if (p+q)6
Example 2:
In a polyhybrid cross, if the specific gene combination is not required in determining the
combination of dominant and recessive phenotypes, Pr may be determined from the specific
term of the binomial or using factorials.
Pentahybrid cross:
AaBbCcDdEe x AaBbCcDdEe
Pr of dominant phenotype = ¾
Pr of recessive phenotype = ¼
Pr of 3 dominant and 2 recessive phenotypes in the progeny:
P = 5! (D)3(d)2
3!2!
= 5! (3/4)3(1/4)2 or P = 10(3/4)3(1/4)2
3! 2!
Dominance relationships
Mendel’s experiments → demonstrated complete dominance relationship between
two different alleles for each gene pair
Other experiments → phenotypes and ratios cannot be explained on the basis of
complete dominance
Exceptions did not disprove Mendel’s principles but instead extended and developed
the forwarded principles
2. Co-Dominance
➢ Both alleles are fully expressed in the heterozygotes → phenotypically distinguishable
from both homozygotes
➢ Each allele of a gene → associated with a specific gene product → both gene products
coded for by the two different alleles will occur in the heterozygote
Multiple Alleles:
- Allele → specific form of a gene
- Generally assumed that for a gene there are only two alternative forms or alleles
- Alleles → may produce a whole series of variable phenotypes → there are more
than two alleles that exist for the gene → defined as a system of multiple alleles
Isoalleles:
- alleles that act within the same phenotypic range
- Wild type isoalleles → isoalleles that act within the phenotypic range of a normal
character
- Mutant isoalleles → isoalleles that act within the phenotypic range of an abnormal
character
Examples of isoalleles:
blood type AB → have both A and B antigens but no anti-A and anti-B
blood type O
- lack both antigens; carry both anti-A and anti-B
- can be transfused to individuals of any blood type if blood is introduced slowly
enough to permit sufficient dilution of anti-A and anti-B antibodies present in the
serum of the donor
4. Rh factor alleles
- Discovered by K. Landsteiner and A.S. Wiener (1940) from rabbits immunized with
blood from monkey (Macaca rhesus)
- Antibodies produced by rabbits were found to agglutinate the RBC of monkey and a
high % of Caucasians of New York
- Rh positive individuals → RBC react with Rh antibody
Rh negative individuals can get sensitized with RBC positive for Rh factor through blood
transfusions
Transfusion of Rh positive blood can be fatal
1. Distinct phenotypic classes are produced, each clearly discernible from all others. Such
traits illustrate discontinuous variation, where phenotypic categories are discrete from
one another.
2. Non-allelic genes are not linked → can assort independently of one another
4. All P1 crosses involve homozygous individuals (e.g. AABB x aabb, AAbb x aaBB or
aaBB x AAbb)
• All F1 consists only of heterozygotes of genotype AaBb
5. In each example, the F2 generation from the heterozygous parents is the main focus of
analysis.
• When 2 non-allelic genes are involved, the F2 genotypes fall into 4 categories:
9 A_B_
3A_bb
3aaB_
1aabb
I. Epistasis
- Greek word “stoppage”
- Effect of one gene masks the effect of a non-allelic gene
- Genes involved influence the same general phenotypic characteristic
Epistatic gene - gene that masks
Hypostatic gene - gene that is masked
A. Dominant Epistasis
A = white a = colored
B = yellow b = green
P1P2 AAbb x aaBB
white yellow
F1 AaBb x AaBb
white white
F2 9 A_B_ white
3 A_bb white
3 aaB_ yellow
1aabb green
B. Recessive Epistasis
Gene A Gene B
Precursor ---------------→ black ---------------→ Agouti
Molecule pigment pattern
(colorless)
• Presence of gene A → black pigment produced from colorless precursor
• Presence of gene B → black pigment is deposited during the development of hair in a
pattern producing the agouti phenotype
• bb genotype → all the hair remains black
• aa genotype → no black pigment is produced regardless of the presence of B or b →
masks or suppresses the expression of B or b allele
Modifiers
- Genes that change the phenotypic effects of other genes in a quantitative fashion
- Specific mode of action is achieved through dilution or enhancement of the effects of
major genes
Suppressors/Suppressor Genes
- Genes that completely suppress the expression of another gene although the latter is
present