Professional Documents
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Perspective
Trained Immunity: a Tool
for Reducing Susceptibility to and
the Severity of SARS-CoV-2 Infection
Mihai G. Netea,1,2,* Evangelos J. Giamarellos-Bourboulis,3 Jorge Domı́nguez-Andrés,1 Nigel Curtis,4 Reinout van Crevel,1
Frank L. van de Veerdonk,1 and Marc Bonten5
1Department of Internal Medicine and Center for Infectious Diseases, Radboud University, 6500 Nijmegen, the Netherlands
2Immunology and Metabolism, Life & Medical Sciences Institute, University of Bonn, 53115 Bonn, Germany
34th Department of Internal Medicine, National and Kapodistrian University of Athens, 12462 Athens, Greece
4Department of Paediatrics, The University of Melbourne and Murdoch Children’s Research Institute, Royal Children’s Hospital Melbourne,
*Correspondence: mihai.netea@radboudumc.nl
https://doi.org/10.1016/j.cell.2020.04.042
SARS-CoV-2 infection is mild in the majority of individuals but progresses into severe pneumonia in
a small proportion of patients. The increased susceptibility to severe disease in the elderly and in-
dividuals with co-morbidities argues for an initial defect in anti-viral host defense mechanisms.
Long-term boosting of innate immune responses, also termed ‘‘trained immunity,’’ by certain live
vaccines (BCG, oral polio vaccine, measles) induces heterologous protection against infections
through epigenetic, transcriptional, and functional reprogramming of innate immune cells. We pro-
pose that induction of trained immunity by whole-microorganism vaccines may represent an impor-
tant tool for reducing susceptibility to and severity of SARS-CoV-2.
From an Emerging Pathogen to Pandemic Epidemiological data show that the elderly and those with co-
In December 2019, health authorities in Wuhan, China, identified morbidities (diabetes, obesity, and cardiovascular, respiratory,
a series of pneumonia cases of unknown etiology that were renal, and lung diseases) are most susceptible to COVID-19
linked to the city’s seafood market. The spread of the infection and more likely to suffer from the most severe disease complica-
and the subsequent health emergency led to mobilization of tions. Interestingly, young children, including infants who are
healthcare authorities, medical professionals, and research more susceptible to other infections, have milder symptoms
communities. This resulted in rapid discovery of the pathogen and less severe COVID-19.
as a novel coronavirus, development of diagnostic tools, and
steps for treatment protocols. This new pathogen was called se- Host-Pathogen Interaction during SARS-CoV-2 Infection
vere acute respiratory syndrome coronavirus-2 (SARS-CoV-2), One very important aspect in improving the outcome of patients
and the disease has been termed coronavirus disease 2019 with COVID-19 is understanding the mechanisms leading to
(COVID-19). Transmission of SARS-CoV-2 occurs mainly via res- increased severity and mortality. The first event after inhalation
piratory droplets, similar to the spread of influenza. The esti- of SARS coronaviruses is invasion of epithelial cells and type II
mated basic reproduction number (R0) and serial interval are pneumocytes through binding of the SARS spike protein to
2.2 and 5–6 days, respectively, a doubling time of the number angiotensin-converting enzyme 2 (ACE2) receptors (Figure 1;
of infected subjects every 3 days. The clinical spectrum of Kuba et al., 2005). This complex is proteolytically processed by
SARS-CoV-2 ranges from asymptomatic disease to mild upper transmembrane protease serine 2 (TMPRSS2), leading to cleav-
respiratory tract infection symptoms (fever, sore throat, cough, age of ACE2 and activation of the spike protein (Glowacka et al.,
and fatigue) and severe pneumonia with respiratory failure and 2011), thereby facilitating viral entry into the target cell. It has
death (Huang et al., 2020). been suggested that cells in which both ACE2 and TMPRSS2
Since the first reports of cases in Wuhan, SARS-CoV-2 spread are expressed are most susceptible to entry by coronaviruses
rapidly throughout the world, and on March 11, 2020, the World from the SARS family, among which is the virus described to
Health Organization (WHO) declared the coronavirus outbreak a cause SARS (SARS-CoV) (Shulla et al., 2011) and, most likely,
pandemic. Millions of people have already been infected, and also SARS-CoV-2. Viral entry and cell infection trigger the host’s
more than 100,000 individuals have died. Despite all preventive immune response, and an inflammatory cascade is initiated by
measures, the number of cases is still rising, with Europe and innate immune cells. The receptor and signaling mechanisms
the United States being the hotspot of the pandemic but with actually responsible for induction of inflammatory mediators,
increasing numbers of cases in other countries and continents. such as cytokines or chemokines, by SARS-CoV-2 have not
Figure 1. Description of Host-Pathogen Interactions between SARS-CoVs and the Host Immune System
The first event after inhalation of SARS-CoV is invasion of epithelial cells and type II pneumocytes through binding of the virus to angiotensin-converting enzyme 2
(ACE-2) receptors through the spike protein expressed on the surface of the virus. The complex formed is processed by TMPRSS2 leading to cleavage of ACE-2
and activation of the spike protein, facilitating viral entry into the target cell. Viral entry and cell infection trigger the immune response. Two possible mechanisms
of initiation of the inflammatory cascade can be considered. One is release of danger signal molecules, such as certain cytokines (such as IL-1a or IL-8) or ATP.
The second involves different recognition pathways mediated by immune cells that initiate the inflammatory response.
yet been identified. However, two possible mechanisms can be ated pathways (Totura et al., 2015), and a similar process may be
envisaged; one is represented by release of danger signal mole- hypothesized for SARS-CoV-2. Similarly, activation of the in-
cules, such as certain cytokines (e.g., interleukin-1a [IL-1a] and flammasome and the IL-1b pathway by SARS-CoV (Shi et al.,
IL-8) or ATP, and a second may involve a different recognition 2019) is also likely to play an important role in pathogenesis;
pathway mediated in professional immune cells by known this hypothesis is supported by recent transcriptional identifica-
pattern recognition receptors, such as Toll-like receptors tion of the IL-1 pathway as being strongly upregulated in COVID-
(TLRs) (Figure 1). Indeed, it has been shown that SARS-CoV is 19 patients (Ong et al., 2020). Induction of innate immune re-
recognized by TLR3 and TLR4 that induce an inflammatory reac- sponses is a crucial step in the pathophysiology of the disease.
tion through both MyD88 (Sheahan et al., 2008) and TRIF-medi- On one hand, it triggers the anti-viral host defense mechanisms
necessary for elimination of infection, but on the other hand, it turn, triggers hyperinflammation and severe complications
may contribute to hyperinflammation and tissue damage during such as ARDS and death (Figure 2). It could therefore be argued
the later stages of the disease in a minority of patients. that a rational immune-based therapy should be adapted ac-
The major clinical complication in patients with COVID-19 is cording to the phase of the disease. In the uninfected host, the
respiratory failure due to local hyperinflammation and acute res- strategy should be to boost the innate immune responses to
piratory distress syndrome (ARDS). The pathophysiology of enable viral replication to be kept under control. In the later
these complications has strong similarities to other severe viral phase of the disease, the aim should be to interrupt the hyper-in-
lung infections, such as influenza, and other infections caused flammatory loop to prevent severe complications. We therefore
by coronaviruses (SARS and Middle East respiratory syndrome argue that induction of innate immune reprogramming (trained
[MERS]). An important mechanism mediating lung pathology in immunity) before infection may be a rational approach for boost-
these infections is a cytokine storm leading to the so-called ing antiviral responses and thus preventing infection. Treatment
‘‘macrophage activation syndrome’’ (MAS) (Channappanavar with inhibitors of the IL-1/IL-6 pathway has been proposed to be
and Perlman, 2017; Huang et al., 2005; Wong et al., 2004). useful in management of hyperinflammation in severely ill pa-
Indeed, an increasing number of very recent studies argue for tients with COVID-19, and clinical trials with this strategy are un-
an increased systemic inflammatory reaction in patients with se- derway.
vere SARS-CoV-2 infection. Circulating concentrations of proin-
flammatory cytokines, such as IL-6, tumor necrosis factor (TNF), Reprogramming Innate Immune Responses: Trained
MCP1, MIP1A, and IP10, are increased in COVID-19 patients in Immunity and Viral Infections
ICU when compared to those who do not need treatment in the Innate immune responses are the first line of defense against
ICU, although the concentrations of some of these cytokines are invading pathogens. Myeloid (e.g., neutrophils, monocytes,
only moderately increased (Huang et al., 2020). This strong in- and macrophages) and lymphoid innate immune cells (e.g., nat-
crease in systemic inflammation is associated with endothelial ural killer [NK] and gdT cells) contribute to activation of host de-
dysfunction, reflected by elevated d-dimers (Zhou et al., 2020) fense during infection, and they are able to eliminate the vast ma-
and hyperactive CCR6+Th17+ T cells locally in the lung (Xu jority of microorganisms that infect us every day. Only when this
et al., 2020). This is supported by a recent study that described first line of defense is overwhelmed by large numbers of patho-
the sequence of immune cell population changes in one patient gens or very invasive microorganisms is the adaptive immune
with mild to moderate COVID-19 who recovered from infection response (T and B cells) activated. For a long time, it was
(Thevarajan et al., 2020). In this patient, the increase in systemic believed that only cells of the adaptive immune system can
concentrations of proinflammatory cytokines was minimal, even mount immunological memory and protect against recurrent
during days 7–9, when the patient was symptomatic. This sug- infection. This property of lymphocytes is the basis of vaccine ef-
gests that a mild course of infection is associated with few sys- ficacy against specific infections.
temic inflammatory effects. However, an increasing number of studies show that innate
These data therefore suggest that an exuberant innate im- immune cells can also display adaptive characteristics after
mune response in the later part of the disease is the main im- certain infections or vaccines, a property that is functionally
mune dysregulation in patients with severe, but not mild, similar to building immunological memory; this process has
COVID-19 infection. However, new studies suggest that immune been termed trained immunity (Netea et al., 2020). Greater pro-
dysfunction in COVID-19 is more complex. In this respect, lym- tection against reinfection, a de facto innate immune memory,
phopenia is one of the most important immune features of the has also been reported in plants and invertebrates, which lack
disease that is associated with severity, with CD4 and CD8 lym- an adaptive immune system. Studies performed in mice defec-
phocytes being defective (Qin et al., 2020). Known age-related tive in functional adaptive immune responses, such as Scid or
differences in the immune function of T cell and B cells could Rag1 / mice, also show that partial protection from reinfection
lead to insufficient control of viral replication, increasing disease can be mediated by innate immune cells (Kleinnijenhuis et al.,
severity. Consistent with this, a recent study shows hyperinflam- 2012). Finally, long-term functional changes with increased anti-
mation of the immune response in COVID-19 patients, charac- microbial function of innate immune cells has been demon-
terized by high cytokine production capacity of circulating strated in humans after vaccination with live vaccines (Kleinnijen-
monocytes despite the severity of the disease (which is different huis et al., 2012).
from bacterial sepsis) and high systemic concentrations of proin- The molecular mechanisms responsible for long-term reprog-
flammatory cytokines (Giamarellos-Bourboulis et al., 2020). ramming of innate immune cells, such as monocytes, macro-
These data suggest that while sustained innate immune function phages, and NK cells, are epigenetic in nature. An initial chal-
leads to hyperinflammation, lymphocyte numbers decline and lenge of innate immune cells by vaccines or living pathogens
that their function may be defective. during infection leads to activation of intracellular pathways
It can thus be postulated that, when someone with a potent that subsequently lead to upregulation of proinflammatory
immune response encounters the SARS-CoV-2 virus, strong gene transcription. After the initial stimulus is eliminated or sub-
activation of local innate and adaptive immune responses keeps sides, gene transcription returns to baseline. Transcription of
viremia under control, leading to low systemic inflammation and genes important for host defense and production of proinflam-
recovery. In contrast, in individuals with a defective immune matory cytokines is subsequently increased more potently
response because of old age or co-morbidities, unrestricted viral when monocytes or macrophages are re-challenged with the
replication leads to high concentrations of the virus, which, in same or a different stimulus (Netea et al., 2020). To allow this
to happen, the cell machinery must grant access to the regions of vironments in the tissue and, in the case of respiratory infections,
the genome that contain the target sequences and the regulatory in the lung. Experimental studies have demonstrated that alveolar
elements of the genes involved in these processes. This is regu- or lung macrophages can also undergo long-term reprogramming
lated through durable epigenetic modifications, which allow un- after infection. A gammaherpesvirus infection can protect against
folding of the chromatin and accessibility of transcription factors an allergic response (Machiels et al., 2017), while adenovirus infec-
to the promoter and enhancer regions of the involved immune- tion induced remodeling in alveolar macrophages and subse-
related genes (Netea et al., 2020). The persistence of epigenetic quently induced more pronounced anti-bacterial immunity (Yao
modifications permits cells to remain in a ‘‘trained’’ functional et al., 2018). This suggests that induction of trained immunity can
state and allows increased accessibility to proinflammatory also provide protection from infections in which local host defense
genes, facilitating faster and increased responsiveness after mechanisms are important in specific organs, such as the lung.
re-challenge. Metabolic processes leading to selective accumu- The vaccine that has probably been best studied for induction
lation or depletion of certain metabolites of the central meta- of trained immunity is the tuberculosis (TB) vaccine bacillus
bolism regulate this process because they function as co-regu- Calmette-Guérin (BCG). BCG is a live attenuated strain derived
latory molecules for epigenetic enzymes (Figure 3). from an isolate of Mycobacterium bovis and is one of the most
An important aspect relates to the durability of the trained immu- widely used vaccines in the world, with more than 130 million in-
nity response, which is ensured at two levels: through effects at fants receiving this vaccine every year. Although developed as a
the level of bone marrow precursors (central innate immune mem- vaccine against tuberculosis, numerous studies have shown its
ory) and at the level of tissue macrophages (peripheral innate im- ability to induce potent protection against other infectious dis-
mune memory). While transcriptional, epigenetic, and functional eases, so-called off-target or non-specific effects (NSEs).
changes have been identified in circulating myeloid cells months Several epidemiological studies in low-income countries have
after induction of trained immunity, these cells have a lifespan of shown an association between neonatal BCG vaccination and
only days in the circulation. This paradox has been explained by a profound reduction in neonatal mortality (Benn et al., 2013).
the finding that this process also takes place at the level of myeloid Two meta-analyses performed at the request of the WHO have
bone marrow progenitors, leading to a myelopoiesis bias and concluded that BCG vaccination is very likely to have important
release of monocytes with a heightened preparedness to respond beneficial NSEs, although the quality of some of the studies was
to pathogens (Mitroulis et al., 2018). Importantly, a second level at questioned, and it was concluded that more research is war-
which trained immunity is induced is represented by the local en- ranted (Higgins et al., 2016). In addition, experimental studies
vaccination may offer protection against respiratory tract infec- years) under chronic care for conditions like hypertension and
tions, including viral infections. We therefore hypothesize that in- diabetes.
duction of trained immunity in general, and by BCG vaccination In addition to BCG, induction of trained immunity by other
in particular, might be a potent preventive measure against vaccinations or microbial stimuli might be envisaged to protect
SARS-CoV-2 infection and/or might reduce disease severity. against COVID-19. The measles vaccine and oral polio vaccine
The administration of the BCG vaccine in immunocompetent (OPV) have also been shown to provide protection against het-
adults is safe, even in latently TB-infected adults and in those erologous infections and mortality (for a review, see Goodridge
with prior BCG vaccination (Hatherill et al., 2014). In a random- et al., 2016). Based on these data, it is justifiable to also eval-
ized controlled trial that compared BCG revaccination with a uate these vaccines for induction of a non-specific boost of
novel TB vaccine and with a placebo, no vaccine-related serious anti-viral mechanisms against COVID-19. Similarly, intranasal
adverse events were observed in the 312 patients in the BCG administration of the TLR3 ligand poly(IC:LC) has been shown
group (Nemes et al., 2018). Based on publicly available data on to protect against SARS in experimental models (Kumaki
BCG vaccination and reported COVID-19 cases, several prelim- et al., 2017) and could be tested against infection with SARS-
inary studies suggest that countries without universal policies of CoV-2.
BCG vaccination (Italy, the Netherlands, Spain, the United
States, and Ecuador) are more prone to be severely affected Boosting or Inhibiting the Immune Response in COVID-
compared with neighboring countries with universal and long- 19 Patients
standing BCG vaccination policies, which would be consistent In relation to the modulatory approaches presented here, we
with the idea that BCG protects the vaccinated elderly popula- propose using strategies that can improve the anti-viral re-
tion. These data are, however, observational and prone to con- sponses of the host (namely, trained immunity) to protect against
founding issues such as limited testing and reporting in many infection with SARS-CoV-2. Induction of trained immunity with
countries; hence, they provide at most indirect support for a pro- BCG vaccination results in a more effective cytokine response;
tective effect of BCG (Dayal and Gupta, 2020; Green et al., 2020; cytokines important for anti-viral effects, including IL-1b, TNF,
Miller et al., 2020). and IFNs, are more readily produced. Importantly, however,
A randomized controlled trial provides the highest quality of these cytokines are also present in high circulating concentra-
evidence for this research question. Given the immediate threat tions in patients with severe forms of the disease and can
of the SARS-CoV-2 epidemic, trials should be designed as prag- contribute to ARDS (Channappanavar and Perlman, 2017). In-
matic studies with a highly feasible primary endpoint that can be flammatory Th1/Th17 responses (Wu and Yang, 2020) may
measured continuously (on a weekly basis). This allows the most also contribute to lung injury in the late phase of the disease.
rapid identification of a beneficial outcome that would allow the Therefore, the theoretical possibility that induction of trained im-
community to also benefit from the intervention if and as soon as munity could have deleterious effects by boosting or inhibiting
it has been demonstrated to be effective. Such trials could be innate immune responses needs to be considered.
first initiated in populations at high risk of infection or those at The answer to this question relies on the pathophysiological
high risk of mortality; hospital staff caring for COVID-19 patients stage of the disease when these two approaches are initiated.
are in the first category, while elderly individuals or patients with In healthy individuals who are vaccinated with BCG and in
co-morbidities are in the second. Although immunosenescence whom the innate antimicrobial mechanisms would be boosted
may result in less effective responses in the elderly, a recent by trained immunity, this is inferred to lead to decreased
study demonstrated largely preserved innate immune function, viremia, faster viral elimination as well as decreased inflamma-
while adaptive immune responses (especially interferon g tion, fewer symptoms, and quicker recovery. In this context,
[IFNg]/IL-22 production) are defective (Ter Horst et al., 2016). both the circulating concentrations of inflammatory cytokines
These findings suggest that an effective trained immunity and the inflammatory Th1/Th17 responses would be induced
response after vaccination may also occur in the elderly. less strongly. In contrast, an initial defective antiviral response
Based on these data, trials assessing the efficacy of BCG in some individuals at risk (e.g., the elderly) probably leads to
vaccination in healthcare workers have been started in the high viremia, deleterious systemic inflammation, and severe
Netherlands and Australia and are being prepared in Denmark, disease. Breaking the loop of systemic inflammation in these
the United States, France, Uruguay, and South Africa. In addi- patients (for example, by blocking the IL-1 pathway with ana-
tion, a randomized clinical trial in which hospitalized elderly pa- kinra or IL-6 function with tocilizumab) could have life-saving
tients without immunosuppression have been vaccinated at hos- effects in some of these patients.
pital discharge with a placebo or BCG is ongoing in Greece. The We thus propose that induction of trained immunity is an
primary study endpoint is the time until the first infection. Enroll- important host-directed approach in COVID-19 patients, which
ment has finished, and results are anticipated by October 2020. might lead to improved anti-viral host defense as well as
Moreover, another clinical study will assess the capacity of the decreased systemic inflammation, ultimately leading to a better
VPM1002 vaccine to protect against COVID-19. VPM1002 is a chance of a favorable outcome (Figure 1).
BCG strain that was genetically modified to improve its immuno-
genicity by replacing the urease C-encoding gene with the lister- Conclusions and Perspectives
iolysin-encoding gene from Listeria monocytogenes (Nieuwen- The COVID-19 pandemic is the most serious global health crisis
huizen et al., 2017). Finally, in Tanzania and Uganda, an RCT is since the Spanish flu in 1918 and probably the most important
under preparation that will randomize 2,000 older adults (>50 global crisis since the end of the Second World War. In such
Figure 4. Trained Immunity Can Be Used to Prevent the Spread of New Infections
Boosting the host defense by induction of trained immunity induces a durable state of activation in the cells of the innate immune system. In this scenario, these
cells would offer faster and increased responsiveness upon contact with a new pathogen, decreasing the severity of the infection and limiting its transmission.
difficult situations in which hundreds of thousands of patients Finally, clinical trials testing the capacity of BCG to protect
have already been infected and thousands have died already, against COVID-19 have been initiated in several countries. How-
rapid mobilization not only of healthcare authorities and the med- ever, BCG may not be the only vaccine that may have such pos-
ical community but also of the entire strength of the research itive heterologous effects; new recombinant MTB-based vac-
community is needed to identify the best methods for diagnosis, cines, such as VPM1002, or other vaccines, such as the
prevention, and treatment of patients. measles vaccine and OPV, may have similar effects and are
One important component of the pathophysiology of COVID- also considered for clinical trials. Such an approach to vaccina-
19 is dysregulation of inflammatory responses, and here we pro- tion using trained immunity, even if successful, will only provide
vided an overview of these processes and proposed a rationale partial protection for a limited period of time. Therefore, induc-
for host-directed therapy based on induction of trained immunity tion of trained immunity while useful, is only a bridge toward
in populations at risk. development of a specific vaccine against SARS-CoV-2, which
Several very important questions need to be tackled urgently is the most important tool for controlling the pandemic. However,
regarding SARS-CoV-2 infection. First, joint efforts should be employing trained immunity boosters of the host defense, even if
made to decipher in detail the pathophysiology of the disease. effective for a limited period of time, might contribute to reducing
While at this stage there are several similarities with other severe the spread of the infection in the first phases of a pandemic and
respiratory viral infections such as influenza, which help us to are an important tool in the fight against a rapidly spreading
propose a first battery of immunomodulatory agents to be tested emerging pathogen (Figure 4).
(such as anakinra or tocilizumab), there are also important differ- One important aspect that should be underlined for all compo-
ences and, most likely, additional pathways involved. Second, nents of research regarding COVID-19 is collaboration. In a se-
understanding in detail the pathophysiology of the disease will vere crisis, such as the SARS-CoV-2 pandemic, full exchange
ultimately lead to better design of new trained immunity ap- of methodologies and protocols as well as collaboration within
proaches, and large studies are needed to demonstrate clinically clinical trials is crucial for increasing the chances to identify
relevant benefits and identify subgroups with the highest medi- new tools for diagnosis and therapy and improving the outcomes
cal gain. of our patients.