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C M Y K

SCIENCE KOLKATA WEDNESDAY 30 MAY 2012 10

Venus o n t h e move 2004-2012, the path of Venus across that takes about eight years and
Po w e r f u l t o o l
tapan kumar maitra explains how DNA
micro-arrays allow the expression of thousands
of genes to be monitored simultaneously
bipash das gupta explains the face of the solar disc at the Passage of Venus across face of the sun consists of five synodic cycles. This
what viewers can expect second transit of such a pair is At an interval of eight years near perfect pattern, also known as
ALTHOUGH the preceding kinds of observations reveal
parallel to that of the previous but “grand quintile”, occurs due to five
from this phenomena lies about 24’ south for transits at the
NORTH
cycles. that different sets of genes are transcribed in different
ascending node in December or 20’ The entire four contacts of the cell types, they cannot easily identify which individual
north at the descending node in I II transit of Venus will be visible from ones are turned on or off. One method for determining
IN our Solar System only three objects can
Transi
t of Ven whether a particular gene is active is to assay for its
June. After 16 years, the variation us 5-6 eastern Australia, New Zealand, corresponding mRNA using a technique that is somewhat
come between earth and the sun at regular becomes 48’ or 40’, which exceeds 12h June New Guinea, the Philippines,
III 2012 fancifully called Northern blotting because it is essentially
intervals while circumambulating in their the apparent 32’ diameter of the 23h northern Asia, eastern China, the “opposite” of Southern blotting. In Northern blotting,
respective orbits — the moon, earth’s satellite; solar disc. So it is impossible to have 00h III Korea, Japan, the islands of the
01h IV an RNA sample is size-fractionated by gel electrophoresis
Venus, also called the “Jewel of the Sky”; and three transits in a period of 16 years. 02h western Pacific Ocean, Hawaii, and transferred to a special blotting paper. The paper is
Mercury. The last two are considered “inferior After 243 years, the circumstances 03h Russia, Alaska and north-west
04h then exposed to a radioactive DNA probe containing the
planets” but it must be mentioned that the of the transits are similar. There is Ecliptic 2012 05h Canada. In the far north, the entire gene sequence of interest and the amount of mRNA is
planes of orbit are not the same. one single or double transit at the Ecliptic 2004 transit can also be seen since the quantified by measuring the bound radioactivity.
EAST
On 6 June this year, India will witness a rare ascending node and one single or Ecliptic 2004
WEST sun will not set. From eastern Alternatively, to monitor the expression of hundreds, or
moment in astronomy when Venus passes over double transit at the descending Ecliptic 2012 Canada, the USA, Central America, even thousands of genes simultaneously, a tool known as
the northern part of the sun, appearing as a node in between the nearest transits the Caribbean and northwest South a DNA micro-array can be used. A DNA micro-array is a
black spot. However, the initial phases will not of consecutive transit seasons, a little I II America only the first part of the thin, fingernail-sized chip made of plastic or glass that has
Transi
be visible as the planet’s transit across the sun more than a century’s lapse with t of Ven transit will be visible because first been spotted at fixed locations with thousands of DNA
us 8 Ju fragments corresponding to various genes of interest. A
will commence before sunrise. It will move in a 1882-2004 as an example. ne 2004 contact occurs in the afternoon of 5
north-south direction, also known as the Venus orbits the sun in 224.701 05h III June and the sun sets while the single micro-array may contain 10,000 or more spots,
06h each
descending node, and the five positions of the earth days, while earth revolves in 07h transit is still in progress. The last
Venus disc will occur, in Universal Time, between 365.265 days. As such, Venus is 08h III
IV part of the transit will be visible in representing a
10 pm on 5 June and 5 am the next day. moving slightly faster. It orbits the 09h
western Asia, Europe, West Asia and different gene.
10h To Normal cells Cancer cells
From the diagram we see that Venus enters sun 2.6 times while earth does so 1.6 11h eastern Africa. determine
from the left as it makes its way westward. Each times before the two planets are 12h However, no portion of the 1 Isolate mRNA
The timings are expressed SOUTH which genes
of the black spots represents the position of the again aligned. The earth-Venus in Universal Time transit will be visible from Portugal are being
planet’s centre at those instants. Venus is shown alignment while revolving around The position of Venus at “I” – showing first contact — Ingress, or southern Spain, western Africa expressed in
immediately before and after it appears over the the sun in their respective orbits is and a portion of southeastern South 2 Use reverse transcriptase
exterior contact; the position of Venus at “II” — showing second any given cell to make cDNAs labelled
sun at mid-transit and, similarly, just before and thus: For earth — 365.256 earth days contact — Ingress, interior contact; the position of Venus at “m” America. population, with fluorescent dyes
after leaving the solar disc from the right. x 1.6 times = 584.4096 days. showing least angular distance; the position of Venus at “III” — ˜ The greatest transit is the instant RNA
The angle at Ingress-Exterior Contact (I), which For Venus: 224.701 earth days x 2.6 showing third contact – Egress, interior contact; and the of minimum separation between molecules
is 41º, as well as at Egress, Exterior Contact (IV) times = 584.2226 earth days. position of Venus at “IV” — showing fourth contact — Egress, Venus and the sun, as seen from (which 3 Combine cDNAs and
at 290º, are measured counter-clockwise along So earth is advanced by 584.4096 exterior contact. earth, on 6 June at 6:59:37 am represent the hybridise to DNA micro-array
the solar limb from the North through East- Indian Standard Time. The chief products of
South-West for the transit of Venus on 6 June. VISIBILITY ACROSS THE WORLD AS A WHOLE ~ 5 & 6JUNE 2012 importance is that their timings add gene tran-
The position angle at Ingress, Interior Contact to information about the motion of scription) are
(II) is 38º and that of Egress, Interior Contact the planet in its orbit. The whole isolated from
(III) 293º, both determined by the same process. transit lasts for approximately six the cells and
The position angles of Venus’ transit on 8 June Entire hours, 39 minutes and 50 seconds. copied with
Entire
2004 were ascertained by the same procedure transit
transit Observers of the 1761 transit of the enzyme
for the five positions of the Venus disc as shown
visible
visible Venus noticed that when the planet reverse Gene expression in cancer cells and
below the ecliptic – the apparent path of the partially overlapped the sun’s disc, transcriptase into normal cells is compared by (1)
sun. In the southern part of the solar disc, Venus part of its limb extending beyond single-stranded isolating mRNA from the two
cDNA molecules, populations of cells and (2) using
has been traced across the face of the sun as a Partial transit visible the sun appeared to be surrounded which are then
black circular spot. Venus transits are rare, with Progress of sunset Partial transit visible with a radian aureole, inferring the reverse transcriptase to make cDNA
attached to a copies of the mRNA that are labelled
only 81 transits between 2000 and +4000. Progress at sunrise presence of atmosphere on Venus. fluorescent dye. with a green fluorescent dye for the
Transit
Eight years after a transit, another can be not visible Second, it was after the second When the DNA normal cDNAs and a red fluorescent
expected at the same node, which often happens contact, when Venus just touched micro-array is dye for the cancer cell cDNAs. A DNA
— the reason being that 13 sidereal revolutions Transit ends at sunset the limb of the sun on the inside, bathed with the micro-array containing thousands of
of Venus are nearly equal to eight sidereal Egress, interior contact Transit ends at sunrise Transit begins at sunrise that a little dark thread known as a fluorescent cDNA, DNA fragments representing different
revolutions of earth, namely: Transit ends at sunset
Transit begins at sunset Egress, interior contact Ingress, exterior contact black drop-like connection each cDNA genes is then bathed (3) with a mixture
Ingress, exterior contact
Venus sidereal period: 224.70080 earth days x 13 Egress, exterior contact Transit ends at sunrise Transit begins at sunrise developed and was sustained for molecule will bind of the two cDNA populations (only a
= 2921.11040 earth days; Earth sidereal period:
Transit begins at sunset Egress, exterior contact Ingress,interior contact several seconds. When the thread by small section of the DNA micro-array is
Ingress,interior contact illustrated). Red spots represent genes
365.25636 earth days x 8 = 2922. 05088 earth broke up, the planet was seen complementary
base-pairing to expressed preferentially in cancer
days. (Nearly equal.); Five synodic period of earth days - 584.2226 completely over the sun’s disc. As cells, green spots represent genes
Venus = 5 x 583.9234 earth days = 2919.617 earth days = 0.1870 4 PATH OF VENUS RELATIVE TO SUN AT INFERIOR such, time of contact could not be the spot expressed preferentially in normal
earth days; 152 synodic period of Venus = 152 x earth days. Thus the VENUS CONJUNCTION IN 2004,2012 & 2020 determined accurately in those days containing the cells, yellow spots represent genes
583.9234 earth days = 88,756.3568 earth days significant alignment (The dates along the path of Venus are for 2012) due to the black drop effect. It was specific gene whose expression is similar in the two
= 243 years + two or three days (depending on point may be obtained 5 presumed that this was due to from which it was cell populations, and dark regions
the number of leap-years.) by the following atmospheric agitation and transcribed. (missing spots) represent genes that
The synodic period is the interval of time the method: For earth — VENUS diffraction or an instrumental The diagram are not expressed in either cell type.
planet takes to cross two successive identical 584.4096 - (0.1870 x 6 factor. illustrates how
Ecliptic this approach can be used to compare the pattern of gene
configurations in space with respect to earth. At 2.6 times that of On the morning of 6 June, expression in two different cell populations.
the end of this period, Venus and earth have Venus) = 584.4096 - VENUS
people in India will witness sunrise The use of DNA micro-arrays for gene expression pro-
returned very nearly to their former positions, 0.4862 = 583.9234 7 with Venus seen as a dark circular filing is a powerful basic research tool that also has
not only with respect to each other but also with days or 584 days. For spot on the sun’s face. As such, the practical applications. For example, human cancers that
respect to nodes. Venus — 584.2226 - N 2020 inferior 2012 Transit 2004 Transit 8 beginning of the transit — Contact-I appear to be the same disease when examined with a
The nodes are the two imaginary points in (0.1870 x 1.6 times conjunction North hemisphere at Ingress, exterior contact and
E South hemisphere microscope are sometimes found to exhibit different gene
space at which an orbit crosses a given plane, that of earth) = Contact-II at Ingress — will not be expression profiles when examined using DNA micro-array
such as the plane of the ecliptic. Transits repeat 584.2226 - 0.2992 = 583.9234 days, or 584 The path of Venus relative to the sun in visible over India. Both contacts will occur when technology. Such information is beginning to allow
with great similarity and are separated by a time days. 2004, 2012 and 2020. As can be seen, in the sun remains below the horizon. However, cancers from different patients to be more accurately
belonging to the same series. The period of 584 days as calculated above is 2020 Venus will pass north of the sun, so the ending of the transit, which includes Contact- characterised, thereby improving the prospects for
In the case of long period series, at each return called the earth-Venus synodic cycle, which there is no transit. III at Egress, interior contact and Contact-IV at custom-tailored treatments that are most appropriate for
the path which Venus appears to take across the means “place of meeting”. An alignment of earth, Egress, will be visible throughout the country. each individual person.
sun is slightly displaced southwards. The series Venus and the sun is taking place in space. A new alignment occurs at about 215.6º further than
ends with a grazing transit at the southern limits earth-Venus synodic cycle begins at inferior the previous one. This process continues as five The writer is scientific officer, MP Birla The writer is associate professor and head, Department of
of the solar disc. conjunction, while the superior conjunction unique Venus-earth locations are created in the Institute of Fundamental Research, MP Botany, Ananda Mohan College, Kolkata
For the transits in pairs for 1874-1882 and marks mid-point in the synodic cycle. Each ecliptic. The result is a pentagonal synodic series Birla Planetarium, Kolkata
sunlight into electricity. But the trouble is the need decomposition of damage to seals by expansion. The

Putting solar cells on the assembly line electrons would return to the atomic
for very pure silicon crystals and the efficiency of
converting sunlight to electricity, at best, is about 10
per cent. It thus has a high cost to output ratio and its
use was limited to areas where
dye and conducting glass material is costly and the
electrolyte permeates plastics and has components
that cause harm if allowed to leak. These
disadvantages have prevented wide use and
They are growing cheaper and shells they came from and the energy very low currents were needed or integration with flexible structures. There have been
hardier, says obtained from the photon would be
Light energy
where there was really no solid state alternatives, in the form of solidified
s ananthanarayanan dissipated. But if there is a voltage alternative. Solar cells were hence melted salts, but these are found to degrade, are not
that draws the released electrons used for powering a satellite in flexible and are not notably efficient.
away, or there is a way to prevent the orbit around the earth or on a
electrons from directly returning to mission to another planet! There Efficient solid state
THE
Electron-type
solar cell takes the direct path from sunlight their source, then the energy of the semiconductor have also been applications for Chung and others at Evanston, Illinois, have
to electricity. Conventionally, it is in resources like photons can be converted to Electrical devices in remote places on earth, demonstrated that an inorganic semiconductor solid,
coal, oil and natural gas that solar energy is stored electricity. In the photocell, it is the energy and these applications have in place of the liquid electrolyte, acts as an efficient
“Hole” type
and theses materials are mined for generation of second of these conditions that is semiconductor multiplied when solar energy carrier of “holes” that arise on exposure to light, with
electricity, for transport to distant places and use. The effective — the photocell consists of started to become cheaper to better results and more stability. The working of DSCs
complete process involves the fixing of atmospheric silicon semiconductor layers that produce and arrange in panels. depends on a mono-molecular layer of the
carbon into vegetation over centuries and then quick allow a stream of electrons to flow in Photovoltaic device The major development for photosensitive dye working between the surface of
release when electricity is generated. But direct one direction only. possible widespread application is titanium dioxide and the electrolyte, which carries
conversion of sunlight, on a large scale, could avoid Silicon consists of a special kind of the Dye-sensitised Solar Cell. In “holes” away from the working material. Liquid
the release of greenhouse gases into the atmosphere. atoms whose outer electron shell, this arrangement, the active electrolytes are good “hole” conductors and prevent
It would also facilitate the use of electrically operated with four electrons, is half-way from component is an organic dye instances of photo-generated electron – “hole” pairs
devices where there are no sources of conventional being in the ideal, stable state, of Transparent electrode placed in contact with a metal coming together and annihilation before they form
-
electricity. none or eight electrons. A lattice of e- e e- oxide in a conducting liquid part of the photocell current. Solid state materials
c
When solar cells were first developed the world was silicon atoms can thus have electrons medium, like the acid in a lead used so far have been poor “hole” conductors and,
e- u
not conscious of the need to reduce the burning of “holding hands”, with each atom acid battery. When the dye is hence, inefficient. The semiconductor material used
r
coal and oil. The applications were also only in areas simulating the “eight electron” TiO2 with
higher
bathed in light it creates a charge by Chung and others is a crystalline compound of
adsorbed r
where the difficulty of carrying an electric cable was condition. Now if an impurity is annihilate
energy DSC at the surface of the metal oxide, caesium, tin and iodine with trace impurity of
dye e
extreme, like in outer space. The devices, hence, introduced, of atoms that have either e- photon level in this case nano-particles of fluorine. This material can be dissolved in organic
n
stayed based on expensive silicon and there was no five or three outer shell electrons, titanium oxide, while oppositely solvents and made to crystallise within the crevices
e- t
emphasis on low cost mass production. But progress the lattice would be peppered with electrolyte charged particles move to the provided by the titanium dioxide nanoparticles. The
in electronics and awareness over the past few either an “extra” electron or with a platinum sheet that is placed on material has high “hole” conductivity and performs as
decades have led to advances and prices have fallen, “missing electron”, ie, a “hole”. In the other side of the oxide sheet. well as liquid electrolyte. With the solid state material
with less-than-electronics-quality silicon wafers and, semiconductors, these “extra” or Connecting the two sides then used, in fact, there is a double advantage of any
later, even other materials being used for building “missing” electrons are freely passed electrode drives a current and neutralises diffusion of electrons to neutralise “holes” being
photocells. This last category, the dye sensitised solar from one atom to another and can the effect on the conducting completely avoided.
cell, is promising, but it has a liquid layer in its act as carriers of charge, like the “free” electrons in surface is rich with electrons stripped from atoms liquid. The conversion efficiency is shown to be 10.2 per
construction that makes it less robust. In Chung, metals. within, while the junction area is “depleted” of The design is conceptually simple and if the cent, which is comparable with liquid based DSCs .
Byunghong Lee, Jiaqing He, Robert PH Chang and Now if there is a junction, of a sheet of the first kind electrons. As depleting amounts to the same charge as quantities of titanium and platinum are limited the The material also allows more efficient use of light in
Mercouri G Kanatzidis, of Northwestern University, of semiconductor stuck on to a sheet of the second that of a “hole”, the “holes” in the other part of the cost is not high. Manufacture is not complex and the the red and infrared regions, over the normal DSCs.
Illinois, report in the journal Nature an effective solid kind, free electrons from the first sheet can travel to junction are repelled and collect at the surface. As the cell can take different shapes or be flexible. It is much The family of solution-based semiconductors, to
state replacement for this function. the second sheet but there can be no current in the two surfaces are thus oppositely charged, connecting less efficient that the normal solar cell, but the cost which the caesium-tin-iodine compound belongs
The photocell is based on the photoelectric effect — opposite direction because the sheet with “holes” in them with a wire would drive an electric current. per unit of electricity produced can be competitive. promises more efficient materials for solar cells.
that energetic photons, or particles of light, can its lattice cannot pass electrons from atom to atom. If The problem is really the conducting liquid, the
dislodge loosely bound electrons from atoms and set such a junction is exposed to energetic photons, Solar cells electrolyte. The electrolyte may freeze and stop The writer can be contacted at
them free as an electric current. Normally, such which is to say visible light or ultra-violet light, the This simple design can thus readily convert working or cause damage. Heat may cause simplescience@gmail.com

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