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1st Prof
α-D-Glucose β-D-Glucose
D-and L Isomerism
Optical Isomerism in Sugars
• Optically Active Compounds
• When a beam of plane polarized light passes through a solution of
certain organic molecules, such as sugar or camphor, the plane of
polarization is rotated through an angle α. Not all organic substances
exhibit this property, but those that do are said to be optically active.
• The angle of rotation can be measured with an instrument called a
polarimeter. When a solution of known concentration of an optically
active material is placed in the polarimeter, the beam of light is
rotated either to the right (clockwise) or to the left (anti-clockwise).
So the compounds which rotate the plane polarized light (PPL) to the
right (clockwise) is said to be dextrorotatory, and those which rotate
the PPL to the left is said to be levorotatory. Dextrorotatory is
indicated by + sign, while Levorotatory by a minus sign (─).
Chiral Carbon Atom
Glucosamine (2-amino-D-glucopyranose).
Galactosamine 2-amino-D-galactopyranose).
D-glucosamine
Physiologically Important Disaccharides
The physiologically important disaccharides are maltose, sucrose, and
lactose.
Physiologically Important Polysaccharides
Polysaccharides include the following physiologically important
carbohydrates.
• Starch is a homopolymer of glucose forming an α-glucosidic chain,
called a glucosan or glucan. It is the most abundant dietary
carbohydrate in cereals, potatoes, legumes, and other vegetables. The
two main constituents are amylose (15–20%), which has a non-
branching helical structure; and amylopectin (80–85%), which
consists of branched chains composed of 24–30 glucose residues
united by 1 → 4 linkages in the chains and by 1 → 6 linkages at the
branch points.
Glycogen is the storage polysaccharide in animals. It is a more highly
branched structure than amylopectin, with chains of 12–14 α-D-
glucopyranose residues (in α[1 → 4]-glucosidic linkage), with
branching by means of α(1 → 6)-glucosidic bonds.
These body proteins are continually being repaired and replaced throughout
our lives. This process (known as ‘protein synthesis’) requires a continuous
supply of amino acids. Although some amino acids can be recycled from the
breakdown of old body proteins, this process is imperfect. This means we
must eat dietary protein to keep up with our body’s amino acid demand.
As protein is essential for cell and tissue growth, adequate intake of protein
is particularly important during periods of rapid growth or increased
demand, such as childhood, adolescence, pregnancy, and breastfeeding.
Structure of Amino Acid
Although more than 300 different amino acids have been described in
nature, only 20 are commonly found as constituents of mammalian
proteins.
[Note: These are the only amino acids that are coded for by DNA, the
genetic material in the cell].
Each amino acid has a carboxyl group, a primary amino group, and a
distinctive side chain (“R-group”) bonded to the α-carbon atom except
proline, which has a secondary amino group.
At physiologic pH (approximately pH 7.4), the carboxyl group is dissociated,
forming the negatively
charged carboxylate ion (–COO–), and the amino group is protonated (–NH3+). In
proteins, almost all of these carboxyl and amino groups are combined through
peptide linkage and, in general, are not available for chemical reaction except
for hydrogen bond formation (Figure 1.1B). Thus, it is the nature of the side
chains that ultimately dictates the role an amino acids play in proteins.
It is, therefore, useful to classify the amino acids according to
the properties of their side chains, that is, whether they are
nonpolar (have an even distribution of electrons) or polar (have
an uneven distribution of electrons, such as acids and bases.
Amino acids with non-polar aliphatic side chains
These are present in glycine, alanine, valine, leucine, isoleucine and
proline.
Amino Acids with Aromatic Side Chains
These includes phenylalanine, tyrosine, and tryptophan. The
hydroxyl group of tyrosine can form hydrogen bonds and shows
polarity. Whereas, the N of imidazole ring in tryptophan gives
polarity. Phenylalanine shows little polarity.
Amino Acids with Uncharged Polar Side Chains
These are present in asparagine, glutamine, cysteine, methionine,
serine and threonine. Polarity of these amino acids is due to the
presence of functional groups that form H-bonds with water.
Amino Acids with Acidic Side Chains
These are present in glutamic acid and aspartic acid. These are
negatively charged at neutral pH and usually called as glutamate and
aspartate.
Amino Acids with Basic Side Chains
These are present in lysine, arginine and histidine. Lysine, and arginine
are strong bases with positive charge on them, while histidine is a weak
base.
Non-standard Amino Acids
These amino acids do not take part in protein synthesis but many of them
play important role in the body. Hundreds of non-standard amino acids are
known but few of which has important physiological functions. i.e.,
1. Citrulline
2. Ornithine
3. Β-Alanine
4. Pantothenic acid
5. Gamma-Aminobutyric acid (GABA)
6. Dihydroxyphenylalanine (DOPA)
7. Homocyestine
8. Iodinated Amino Acids
Citrulline
Citrulline is an amino acid that was first found in watermelon. It is
considered nonessential, meaning that your body can naturally
produce some on its own.
Ornithine
Ornithine is used for improving athletic performance, reducing
glutamine poisoning in the treatment of a brain condition due to
liver disease (hepatic encephalopathy), and for wound healing.
Both citrulline and ornithine occurs in the liver and take part
in the formation of urea from NH3.
Β-Alanine
It is a part of the molecule of a vitamin called pantothenic acid
Pantothenic acid
It is a widely distributed vitamin and forms a part of the molecule of
Coenzyme A which in turn take part in many metabolic reactions
Gamma-Aminobutyric Acid (GABA)
It occurs in brain and other tissues. It act as a neurotransmitter
Dihydroxyphenylalanine (DOPA)
It is formed in tissues during metabolism of phenylalanine and tyrosine.
L-Dopa is used in treating parkinsonism because in brain it give rise to a
neurotransmitter called dopamine. It is abbreviated as Dopa because it
is also called dioxyphenylalanine.
Homocysteine
Homocysteine is a common amino acid in your blood. You get it mostly
from eating meat. High levels of it are linked to early development of
heart disease. In fact, a high level of homocysteine is a risk factor for
heart disease. It is associated with low levels of vitamins B6, B12, and
folate, as well as renal disease
Iodinated Amino Acids
It includes mono- iodotyrosine (MIT), di-iodotyrosine (DIT), tri-
iodothyronine (T3) and tetra-iodothronine (T4). T3 and T4 are thyroid
hormones, while the MIT and DIT are intermediates molecules in their
synthesis.
Classification of Proteins
Proteins Classification
Based on physiochemical properties, proteins are classified into
following types:
1. Simple Proteins
2. Compound or Conjugated Proteins
3. Derived Proteins
Simple Proteins
• These proteins on hydrolysis yield only amino acids or their
derivatives.
• These includes
1. Albumins,
2. Globulins,
3. Globins
4. Prolamin
5. Histones
6. Protamines
7. Albuminoids
Albumin
• Albumin is a family of globular proteins, the most common of which
are the serum albumin. Other includes ovalbumin and lactalbumin.
• All the proteins of the albumin family are water-soluble, moderately
soluble in concentrated salt solutions, and experience heat
denaturation.
• They can also be precipitated by full saturation with ammonium
sulphate.
• Albumin is a protein made by your liver. It helps keep fluid in your
bloodstream so it doesn't leak into other tissues. It also carries
various substances throughout your body, including hormones,
vitamins, and enzymes. Low albumin levels can indicate a problem
with your liver or kidneys.
Globulins
• These are insoluble in water but soluble in dilute salt solution and are
heat coagulable.
• Found in animals (lactoglobulins, myosin, ovoglobulin, serum
globulins) and plants (legumin).
• These are easily coagulated compared to albumin and that’s why can
be precipitated by half-saturation with ammonium sulphate. This half-
saturation can be used to separate albumins from globulins-salting
out processes.
• They are made in your liver by your immune system. Globulins play
an important role in liver function, blood clotting, and fighting
infection
Globins
• The globins are a superfamily of heme-containing globular proteins,
involved in binding and/or transporting oxygen. Two prominent
members include myoglobin and hemoglobin.
• Globins are rich in histidine but are not basic
• They combine with heme to form hemoglobin. Hemoglobin of
different species are different only with respect to globin part, heme
part is same in all cases.
• Myoglobin is a small protein found in heart and skeletal muscles that
binds oxygen. It traps oxygen within muscle cells, allowing the cells to
produce the energy required for muscles to contract. When heart or
skeletal muscle is injured, myoglobin is released into the blood.
Prolamins
• Prolamins are a group of plant storage proteins having a high proline
amino acid content but deficient in lysine. They are found in plants,
mainly in the seeds of cereal grains such as wheat (gliadin), barley
(hordein), rye (secalin), corn (zein), sorghum (kafirin), and oats
(avenin).
• They are soluble in 70-80% ethanol but insoluble in water and
absolute alcohol.
Histones
• Histones are a family of basic proteins that associate with DNA in the
nucleus and help condense it into chromatin, they are alkaline (basic
pH) proteins, and their positive charges allow them to associate with
DNA.
• They are found inside the nucleus of eukaryotic cells. The association
of DNA and histones form a complex called nucleosomes (10 nm
diameter), in which DNA strand wind around a core of histone
molecule.
• These proteins are rich in arginine, contain little or no tryptophan but
tyrosine is present in their molecules.
• These are soluble in water but not in ammonium hydroxide.
Protamines
• These proteins are present in sperm cells and are small in size and
basic in nature.
• These resembles histones but unlike them are soluble in ammonium
hydroxide.
• Like histones, they form nucleoproteins with nucleic acids and are
rich in arginine.
• Protamines lack in both tyrosine and tryptophan.
Albuminoids
• These are called scleroproteins and occurs only in animals and do not
occurs in plants.
• These proteins include;
• Collagen (found in connective tissue)
• Elastin (found in connective tissue)
• Keratin (found in nails, hairs, hoofs, horns etc.)
Collagen
• Collagen is the most abundant protein in your body.
• It is the major component of connective tissues that make up several
body parts, including tendons, ligaments, skin, and muscles.
• Collagen has many important functions, including providing your skin
with structure and strengthening your bones.
• You can think of it as the “glue” that holds all these things together. In
fact, the word comes from the Greek word “kólla,” which means glue.
• There are also several foods you can eat to increase your collagen
intake, including bone broth.
• Consuming collagen may have a variety of health benefits, from
relieving joint pain to improving skin health
Important functions of collagen
1. Can improve skin health
Collagen may help slow the aging of your skin. However, stronger evidence is
needed from studies examining the effects of collagen on its own.
2. Helps relieve joint pain
• Collagen has been shown to reduce inflammation in the body. This may
help promote pain relief among people with joint disorders like
osteoarthritis.
• Collagen helps maintain the integrity of your cartilage, which is the rubber-
like tissue that protects your joints.
• As the amount of collagen in your body decreases as you get older, your
risk of developing degenerative joint disorders such as osteoarthritis
increases (9).
• Some studies have shown that taking collagen supplements may help
improve symptoms of osteoarthritis and reduce joint pain overall.
• In one study, 73 athletes who consumed 10 grams of collagen daily for
24 weeks experienced a significant decrease in joint pain while walking
and at rest, compared with a group that did not take it.
• In another study, adults took 2 grams of collagen daily for 70 days. Those
who took collagen had a significant reduction in joint pain and were
better able to engage in physical activity than those who did not take it.
• Researchers have theorized that supplemental collagen may accumulate
in cartilage and stimulate your tissues to make collagen.
• They have suggested this may lead to lower inflammation, better
support of your joints, and reduced pain.
• If you want to try taking a collagen supplement for its potential pain-
relieving effects, studies suggest you should start with a daily dosage of
8–12 grams.
3. Could prevent bone loss
• Your bones are made mostly of collagen, which gives them structure and helps
keep them strong.
• Just as the collagen in your body deteriorates as you age, so does bone mass. This
may lead to conditions like osteoporosis, which is characterized by low bone
density and linked to a higher risk of bone fractures.
• Studies have shown that taking collagen supplements may have certain effects in
the body that help inhibit the bone breakdown that leads to osteoporosis.
• In one study, women took either a calcium supplement combined with 5 grams of
collagen or a calcium supplement and no collagen daily for 12 months.
• By the end of the study, the women taking the calcium and collagen supplement
had significantly lower blood levels of proteins that promote bone breakdown
than those taking only the calcium.
• Another study found similar results in 66 women who took 5 grams of collagen
daily for 12 months.
• The women who took the collagen showed an increase of up to 7% in
their bone mineral density (BMD), compared with women who did
not consume collagen.
• BMD is a measure of the density of minerals, such as calcium, in your
bones. Low BMD is associated with weak bones and the development
of osteoporosis.
• These results are promising, but more human studies are needed
before the role of collagen supplements in bone health can be
confirmed.
4. Could boost muscle mass
• Between 1–10% of muscle tissue is composed of collagen. This protein is
necessary to keep your muscles strong and functioning properly.
• Studies suggest that collagen supplements help boost muscle mass in
people with sarcopenia, the loss of muscle mass that happens with age.
• In one study, 27 frail men took 15 grams of collagen while participating in
an exercise program daily for 12 weeks. Compared with men who exercised
but did not take collagen, they gained significantly more muscle mass and
strength.
• Researchers have suggested that taking collagen may promote the
synthesis of muscle proteins like creatine, as well as stimulate muscle
growth after exercise.
5. Promotes heart health
• Researchers have theorized that taking collagen supplements may help reduce
the risk of heart-related conditions.
• Collagen provides structure to your arteries, which are the blood vessels that
carry blood from your heart to the rest of your body. Without enough collagen,
arteries may become weak and fragile.
• This may lead to atherosclerosis, a disease characterized by the narrowing of the
arteries. Atherosclerosis has the potential to lead to heart attack and stroke.
• In one study, 31 healthy adults took 16 grams of collagen daily for 6 months. By
the end, they had experienced a significant reduction in measures of artery
stiffness, compared with before they started taking the supplement.
• Additionally, they increased their levels of HDL “good” cholesterol by an average
of 6%. HDL is an important factor in the risk of heart conditions, including
atherosclerosis.
• Nevertheless, more studies on the role of collagen supplements in heart health
are needed.
6. Other health benefits
• Collagen supplements may have other health benefits, but these have not been studied
extensively.
• Hair and nails. Taking collagen may increase the strength of your nails by preventing
brittleness. Additionally, it may stimulate your hair and nails to grow longer.
• Gut health. Although there is no scientific evidence to support this claim, some health
practitioners promote the use of collagen supplements to treat intestinal permeability,
or leaky gut syndrome.
• Brain health. No studies have examined the role of collagen supplements in brain
health. However, some people claim they improve mood and reduce symptoms of
anxiety.
• Weight loss. Some believe that taking collagen supplements may promote weight loss
and a faster metabolism. There have not been any studies to support these claims.
• Although these potential effects are promising, more research is needed before formal
conclusions can be made.
Elastin
• Elastin is a key protein of the extracellular matrix. It is highly elastic
and present in connective tissue allowing many tissues in the body to
resume their shape after stretching or contracting.
• Elastin helps skin to return to its original position when it is poked or
pinched.
• Elastic tissues is a mixture of elastin, collagen and a carbohydrate
containing protein called elastomucin.
• Elastin has characteristic non-standard aminoacids called desmosin
and isodesmosin which are derived from lysine.
Keratin
• Keratin is the type of protein that makes up your hair, skin, nails, horns,
hoofs, feathers, tortoise shell etc.
• Keratin can also be found in your internal organs and glands.
• Keratin is a protective protein, less prone to scratching or tearing than
other types of cells your body produces.
• Unlike collagen and elstin which are extracellular, keratin is found within
the cell.
• It has high cysteine content and forming cross links between peptide
chains.
• It is insoluble in water, organic solvents, dilute acids and alkalies.
• Chemically, keratin is quite inert and resistant.
Compound or Conjugated Proteins
• In these molecules the protein is attached or conjugated to some
non-protein groups which are called prosthetic groups. For
example, phospho-proteins are conjugated with phosphoric
acid; lipoproteins are conjugated with lipid substances like lecithin,
cholesterol and fatty acids.
• Conjugated proteins are proteins that contain non-protein
constituents or prosthetic groups. The prosthetic groups are
permanently associated with the molecule, usually through covalent
and/or non-covalent linkages with the side chains of certain amino
acids
Major Classes of Conjugated Proteins
Conjugated proteins can be divided into three major classes:
• Waxes are esters of fatty acids with alcohol other than glycerol
(higher molecular weight monohydric alcohols)
Compound Lipids
These are esters of fatty acids containing groups in addition to an
alcohol and a fatty acid. For example, the additional group in
phospholipids are phosphoric acid residue.
• Phospholipids = Alcohol, fatty acid, and phosphoric acid residue.
Additional groups may also be N-containing bases and other
substituents. Based on alcohol, these can be divided into
glycerophospholipids and sphingophospholipids.
• Glycolipids = sphingosine, fatty acid and a carbohydrate
• Sulfolipids = sphingosine, fatty acid, sugar and sulfate group
• Gangliosides = sphingosine, fatty acid, sugar units, N-acetyl
hexosamine and N-acetylneuraminic acid.
• Lipoproteins = complexes of lipids with proteins.
Derived, precursor and associated lipids
• These are the hydrolytic products of simple and compound lipids
Fatty Acids
Fatty Acids
• Fatty acids are long-chain carboxylic acids ranging mostly in chain length from 4-
24 carbon atoms. With some exceptions, they contain even number of carbon
atoms and the majority containing 16 and 18 carbon atoms.
• In waxes, fatty acids contain up to 34 carbon atoms, whereas waxes extracted
from a bacteria (Tubercle bacilli) have very complex fatty acids containing
around 90 carbon atoms.
• Fatty acids are insoluble in water, and may be saturated or unsaturated.
Naturally occurring saturated fatty acids below 8 carbons are liquid at room
temperature.
• Simply, Fatty acids are aliphatic carboxylic acids having a general formula R-
COOH, where R represents a hydrocarbon chain. Fatty acids are not found in a
free state in nature; commonly they exist in combination with glycerol (an
alcohol) in the form of triglyceride.
Fatty Acid Formulas
The formulas for fatty acids are written as
• Condensed formulas.
• Line-bond formulas.
• For example caprylic acid with 8 carbon atoms.
O
CH3—(CH2)6—COOH OH
CH3—CH2—CH2—CH2—CH2—CH2—CH2—COOH
Types of fatty acids
Since soaps have free alkali ions, they are alkaline in nature.
Hence, the soap solutions are slippery to the touch.
Formation of detergents
• Reduction of carboxyl group of fatty acids produce alkyl alcohols which can
be sulfated or sulfonated to form alkyl sulfates or sulfonates which acts as
detergents.
• Unlike soaps, detergents are stable in acidic solutions and do not form
insoluble salts with calcium or magnesium. They can therefore be used for
washing clothes in hard water.
• Detergents are good cleansers because they are efficient wetting agents
and emulsifiers.
• Hard water... is water that contains an appreciable quantity of dissolved
minerals (like calcium and magnesium).
• Soft water... is treated water in which the only ion is sodium.
Formation of esters
• The most chemically reactive portion of fatty acids is the acidic
carboxyl group (COOH). It reacts with alcohols (R′OH) to form
products known as esters (RCOOR′) and releases water in the process.
This ester bond is the principal covalent bond linking fatty acid
moieties to other groups.
Much of Flax seed’s benefits are a function of its alpha linolenic acid
(ALA) content, and the fact that ALA can be converted by the body
into EPA—the same omega-3 found in fish oil. As a matter of fact
research has found that supplementation with Flax seed oil can
effectively increase EPA concentrations in tissues.
Studies involving Flax seed have been conducted on its anti-
inflammatory properties, its anti-lupus properties, and its
cardiovascular enhancing properties.
However, studies repeatedly prove that women who consume the most
omega-3s have milder menstrual pain. One study even determined that an
omega-3 supplement was more effective than ibuprofen in treating severe
pain during menstruation.
15. Improve Sleep
Good sleep is one of the foundations of optimal health. Studies tie sleep
deprivation to many diseases, including obesity, diabetes and depression.
Low levels of omega-3 fatty acids are associated with sleep problems in
children and obstructive sleep apnea in adults. Low levels of DHA are also
linked to lower levels of the hormone melatonin, which helps you fall
asleep.
Studies in both children and adults reveal that supplementing with omega-3
increases the length and quality of sleep.
1. Phospholipids
2. Glycolipids
3. Sulfolipids
4. Gangliosides
Phospholipids
Cardiolipin:
• Abundantly found in mitochondrial membrane.
• This is the only phospholipid with antigenic properties.
• Cardiolipins are present in heart muscles and is used as an antigen for
detection of syphilis.
(B) Sphingolipids
Ceramide: If R= H
Cerebroside: If R= Glucose
As the name indicates it is found in the brain especially
in the myelin sheath
Sphingomyelin: If R= Phosphocholine or
phosphoethanolamine
Sphingomyelin is found in axons
and Myelin sheath. Enriched in
CNS
2. Glycolipids
• Glycolipids are carbohydrate containing lipid molecules that
resembles sphingolipids because it contain sphingosine.
• Glycolipids = sphingosine, fatty acid and a carbohydrate.
• Also called ceramide sugars
• Fatty acids usually contain 22-26 carbon atoms
• Each molecule of glycolipid may
contain one to six sugar units
• They are also called glycosphingolipids or simply sphingolipids.
• It differs from sphingophospholipids in the respect that does not contain
Phosphocholine or phosphoethanolamine
• Found in white matter of brain and myelin sheath of nerves
• Glycolipids containing one sugar unit are called cerebrosides.
• Individual glycolipids are differentiated on the basis of kind of fatty acids or
sugar in the molecule. Four types are commonly observed)
a) Kerasin- contains Lignoceric acid
b) Cerebron- Contains cerebronic acid
c) Nervon- contains Nervonic acid
d) Oxynervon- contains hydroxy derivative of nervonic acid
C. Specificity
Enzymes are highly specific, interacting with one or a few substrates
and catalyzing only one type of chemical reaction.
Note: The set of enzymes made in a cell determines which metabolic
pathways occur in that cell.
D. Regulation
Enzyme activity can be regulated, that is, increased or decreased, so
that the rate of product formation responds to cellular need.
E. Location within the cell
Many enzymes are localized in specific organelles within the cell. Such
compartmentalization serves to isolate the reaction substrate or
product from other competing reactions. This provides a favorable
environment for the reaction, and organizes the thousands of enzymes
present in the cell into purposeful pathways.
HOW ENZYMES WORK
The catalytic efficiency of enzymes is explained by two perspectives:
Mechanism of Enzyme Action
The mechanism of enzyme action can be viewed from two different
perspectives.
• The first treats catalysis in terms of energy changes that occur during
the reaction, that is, enzymes provide an alternate, energetically
favorable reaction pathway different from the un-catalyzed reaction.
• The second perspective describes how the active site chemically
facilitates catalysis.
THERMODYNAMIC CHANGES
• All chemical reactions have energy barriers between reactants and
products.
• The difference in transitional state and substrate is called activational
barrier.
• Only a few substances cross the activation barrier and change
into products. That’s why rate of un-catalyzed reactions is
much slow.
• Enzymes provide an alternate pathway for conversion of
substrate into products.
• Enzymes accelerate reaction rates by forming transitional
state having low activation energy. Hence, the reaction rate is
increased many folds in the
presence of enzymes.
• The total energy of the system remains the same and
equilibrium state is not disturbed.
Alternate reaction pathway: An enzyme
allows a reaction to proceed rapidly under
conditions prevailing in the cell by providing
an alternate reaction pathway with a lower
free energy of activation.
The enzyme does not change the free
energies of the reactants or products and,
therefore, does not change the equilibrium
of the reaction. It does, however, accelerate
the rate with which equilibrium is reached.
Chemistry of the Active Site
The active site is not a passive receptacle for binding the substrate, but
rather is a complex molecular machine employing a diversity of chemical
mechanisms to facilitate the conversion of substrate to product. A number
of factors are responsible for the catalytic efficiency of enzymes, including
the following:
1. Transition-state stabilization:
The active site often acts as a flexible molecular template that binds the
substrate and initiates its conversion to the transition state, a structure in
which the bonds are not like those in the substrate or the product. By
stabilizing the transition state, the enzyme greatly increases the
concentration of the reactive intermediate that can be converted to product
and, thus, accelerates the reaction.
2. Other mechanisms
The active site can provide catalytic groups that enhance the
probability that the transition state is formed.
In some enzymes, these groups can participate in general acid-base
catalysis in which amino acid residues provide or accept protons.
In other enzymes, catalysis may involve the transient formation of a
covalent ES complex.
3. Visualization of the transition state
INHIBITORS
Any substance that can diminish the velocity of an
enzyme catalyzed reaction is called an inhibitor.
REVERSIBLE INHIBITION
It is an inhibition of enzyme activity in which the inhibiting molecular
entity can associate and dissociate from the protein‘s binding site.
TYPES OF REVERSIBLE INHIBITION
There are four types
1. Competitive inhibition
2. Non-competitive inhibition
3. Uncompetitive inhibition
4. Mixed inhibition
1. Competitive inhibition
This type of inhibition occurs when the inhibitor binds reversibly
to the same site (active site of enzyme) that the substrate would
normally occupy and, therefore, competes with the substrate for
that site. Formation of Enzyme-Substrate complex is reduced
while a new Enzyme-Inhibitor complex is formed
3. MIXED INHIBITION
In this type of inhibition both E.I and E.S.I complexes are formed.
Both complexes are catalytically inactive.
4. UNCOMPETITIVE INHIBITION
In this type of inhibition, inhibitor does not compete with the
substrate for the active site of enzyme instead it binds to another site
known as allosteric site.
EXAMPLES OF UNCOMPETITIVE INHIBITION
Drugs to treat cases of poisoning by methanol or ethylene glycol act as
uncompetitive inhibitors. Tetramethylene sulfoxide and 3- butylthiolene 1-oxide
are uncompetitive inhibitors of liver alcohaldehydrogenase.
IRREVERSIBLE INHIBITION
This type of inhibition involves the covalent attachment of the inhibitor
to the enzyme. The catalytic activity of enzyme is completely lost. It can
only be restored only by synthesizing molecules.
Aspirin which targets and covalently modifies a key enzyme involved in
inflammation is an irreversible inhibitor.
SUICIDE INHIBITION :
It is an unusual type of irreversible inhibition where the enzyme
converts the inhibitor into a reactive form in its active site.
ENZYME ACTIVATION
Activation is defined as the conversion of an inactive form of an
enzyme to active form which processes the metabolic activity.
TYPES OFACTIVATION
• Activation by co-factors.
• Conversion of an enzyme precursor.
ACTIVATION BY CO FACTORS
Many enzymes are activated by co-factors.
Examples: DNA polymerase is a holoenzyme that catalyzes the
polymerization of de -oxyribonucleotide into a DNA strand. It uses Mg-
ion for catalytic activity. Horse liver dehydrogenase uses Zn- ion for it’s
activation.
Classification
Nomenclature
Each enzyme is assigned two names. The first is its short,
recommended name, convenient for everyday use. The second is the
more complete systematic name, which is used when an enzyme must
be identified without ambiguity.
Most commonly used enzyme names have the suffix “-ase” attached to
the substrate of the reaction (for example, glucosidase and urease), or
to a description of the action performed (for example, lactate
dehydrogenase and adenylyl cyclase).
[Note: Some enzymes retain their original trivial names, which give no
hint of the associated enzymic reaction, for example, trypsin and
pepsin.]
To address the ambiguity and confusion arising from these
inconsistencies in nomenclature and the continuing discovery
of new enzymes, the International Union of Biochemists
(IUB) developed a complex but unambiguous system of
enzyme nomenclature.
In the IUB system, each enzyme has a unique name and code
number that reflect the type of reaction catalyzed and the
substrates involved. Enzymes are grouped into six classes,
each with several subclasses.
Listed below are the six IUB classes of enzymes and the reactions they
catalyze.
1. Oxidoreductases catalyze oxidations and reductions.
2. Transferases catalyze transfer of groups such as methyl or glycosyl
groups from a donor molecule to an acceptor molecule.
3. Hydrolases catalyze the hydrolytic cleavage of C──C, C──O, C──N, P──O,
and certain other bonds, including acid anhydride bonds.
4. Lyases catalyze cleavage of C──C, C──O, C──N, and other bonds by
elimination, leaving double bonds, and also add groups to double bonds.
5. Isomerases catalyze geometric or structural changes within a single
molecule.
6. Ligases catalyze the joining together of two molecules, coupled to the
hydrolysis of a pyrophosphoryl group in ATP or a similar nucleoside
triphosphate.
For example, the enzyme commonly called “hexokinase”
is designated “ATP:D-hexose-6-phosphotransferase E.C.
2.7.1.1.” This identifies hexokinase as a member of class 2
(transferases), subclass 7 (transfer of a phosphoryl group),
sub-subclass 1 (alcohol is the phosphoryl acceptor).
Finally, the term “hexose-6” indicates that the alcohol
phosphorylated is that of carbon six of a hexose.
Vitamins
Vitamins
A vitamin is defined as “an organic compound that is
required in the diet in small amounts for the
maintenance of normal metabolic integrity”.
OR
“A group of organic nutrients required in small
quantities for a variety of biochemical functions and
which, generally, cannot be synthesized by the body
and must therefore be supplied in the diet”.
Biomedical Importance
On the basis of solubility vitamins are classified into lipid soluble
and water soluble vitamins.
The lipid-soluble vitamins are apolar hydrophobic compounds
that can only be absorbed efficiently when there is normal fat
absorption. They are transported in the blood, like any other
apolar lipid, in lipoproteins or attached to specific binding
proteins.
They have diverse functions, for example vitamin A, vision;
vitamin D, calcium and phosphate metabolism; vitamin E,
antioxidant; vitamin K, blood clotting.
Deficiency of lipid-soluble vitamins
Deficiency of lipid-soluble vitamins occurs due to the following reasons;
1. dietary inadequacy,
2. steatorrhea (affect digestion and absorption)
3. disorders of the biliary system (affect digestion and absorption)
Deficiency of;
Vitamin A: Night blindness and xerophthalmia
Vitamin D: Rickets in young children and osteomalacia in adults
Vitamin E: Neurologic disorders and anemia of the newborn
Vitamin K: Hemorrhage of the newborn.
Water-soluble vitamins
Water-soluble vitamins = Vitamin-B complex and vitamin C and
function as enzyme cofactors. Folic acid also called as B9 vitamin, it
helps the body make healthy red blood cells.
Deficiency of a single vitamin of the B complex is rare, since poor diets
are most often associated with multiple deficiency states.
beriberi (thiamin);
cheilosis, glossitis, seborrhea (riboflavin); pellagra (niacin);
peripheral neuritis (pyridoxine); megaloblastic anemia, methylmalonic
aciduria, and pernicious anemia (vitamin B12); and megaloblastic
anemia (folic acid). Vitamin C deficiency leads to scurvy.
THE VITAMINS ARE A DISPARATE GROUP OF COMPOUNDS WITH A
VARIETY OF METABOLIC FUNCTIONS
The U.S. Preventive Services Task Force (USPSTF) stated that, due to insufficient
evidence, it was unable to assess the balance of benefits and harms of
supplemental vitamin D to prevent cancer. Taken together, studies to date do not
indicate that vitamin D with or without calcium supplementation reduces the
incidence of cancer, but adequate or higher 25(OH)D levels might reduce cancer
mortality rates.
6. Cardiovascular disease
The U.S. Preventive Services Task Force (USPSTF) stated that, due to insufficient
evidence, it was unable to assess the balance of benefits and harms of
supplemental vitamin D to prevent cancer. Taken together, studies to date do not
indicate that vitamin D with or without calcium supplementation reduces the
incidence of cancer, but adequate or higher 25(OH)D levels might reduce cancer
mortality rates.
Sun exposure & Vitamin-D
Most people in the world meet at least some of their vitamin D needs
through exposure to sunlight. Type B UV (UVB) radiation with a wavelength
of approximately 290–320 nanometers penetrates uncovered skin and
converts cutaneous 7-dehydrocholesterol to previtamin D3, which in turn
becomes vitamin D3.
Season, time of day, length of day, cloud cover, smog, skin melanin content,
and sunscreen are among the factors that affect UV radiation exposure and
vitamin D synthesis.
Older people and people with dark skin are less able to produce vitamin D
from sunlight. UVB radiation does not penetrate glass, so exposure to
sunshine indoors through a window does not produce vitamin D
How Much Sun exposure is needed to maintain adequate vitamin D levels
The factors that affect UV radiation exposure, individual responsiveness
(white/blacks), and uncertainties about the amount of sun exposure
make it difficult to provide guidelines on how much sun exposure is
required for sufficient vitamin D synthesis. But
Some expert bodies and vitamin D researchers suggest, for example,
that approximately 5–30 minutes of sun exposure, particularly between
10 a.m. and 4 p.m., either daily or at least twice a week to the face,
arms, hands, and legs without sunscreen usually leads to sufficient
vitamin D synthesis.
Moderate use of commercial tanning beds that emit 2% to 6% UVB
radiation is also effective.
Is sunlight exposure worth the skin cancer risk to
make sure people get enough vitamin D?
It does seem like 10–15 minutes of sun exposure a few times a week is
harmless, but that exposure can have consequences over your lifetime.
Despite the importance of the sun for vitamin D synthesis, limiting skin
exposure to sunlight and UV radiation from tanning beds is prudent. UV
radiation is a carcinogen, and UV exposure is the most preventable cause of
skin cancer.
Experts recommend taking photoprotective measures to reduce the risk of
skin cancer, including using sunscreen with a sun protection factor (SPF) of
15 or higher, whenever people are exposed to the sun. Sunscreens with an
SPF of 8 or more appear to block vitamin D-producing UV rays. As little as 60
seconds of UVA exposure to the sun can increase your risk for melanoma.
Recommended Dietary Allowances (RDAs)
for Vitamin D
Recommended Dietary
Allowance (RDA):
Average daily level of intake
sufficient to meet the nutrient
requirements of nearly all
(97%–98%) healthy individuals;
often used to plan nutritionally
adequate diets for individuals.
1 Micro gram (mcg) of Vitamin
D is equal to 40 IU.
Vitamin D content of selected foods
Deficiency
Although the body can create vitamin D, a deficiency can occur for many reasons.
Causes
Skin type: Darker skin, for example, and sunscreen, reduce the body’s ability to
absorb the ultraviolet radiation B (UVB) rays from the sun. Absorbing sunlight is
essential for the skin to produce vitamin D.
Sunscreen: A sunscreen with a sun protection factor (SPF) of 30 can reduce the
body’s ability to synthesize the vitamin by 95% or more. Covering the skin with
clothing can inhibit vitamin D production also.
Geographical location: People who live in northern latitudes or areas of high
pollution, work night shifts, or are homebound should aim to consume vitamin D
from food sources whenever possible.
Breastfeeding: Infants who exclusively breastfeed need a vitamin D supplement,
especially if they have dark skin or have minimal sun exposure. The American
Academy of Pediatrics recommend that all breastfed infants receive 400
international units (IU) per day of oral vitamin D.
Deficiency Symptoms
Symptoms of vitamin D deficiency may include:
1. regular sickness or infection
2. fatigue
3. bone and back pain
4. low mood
5. impaired wound healing
6. hair loss
7. muscle pain
If Vitamin D deficiency continues for long periods, it may result in
complications, such as:
1. cardiovascular conditions
2. autoimmune problems
3. neurological diseases
4. infections
5. pregnancy complications
6. certain cancers, especially breast, prostate, and colon.
Risks
The upper limit that healthcare professionals recommend for vitamin D is 4,000 IU per
day for an adult. However, the National Institutes of Health (NIH) say that vitamin D
toxicity is unlikely at intakes under 10,000 IU per day. Excessive consumption of vitamin
D can lead to over calcification of bones and the hardening of blood vessels, kidney,
lung, and heart tissues. The most common symptoms of excessive vitamin D include
headache and nausea. However, too much vitamin D can also lead to the following:
loss of appetite
dry mouth
a metallic taste
vomiting
constipation
diarrhea
Vitamin-E
Vitamin E is found naturally in some foods, added to others, and
available as a dietary supplement. “Vitamin E” is the collective name
for a group of fat-soluble compounds with distinctive antioxdant
activities”.
Naturally occurring vitamin E exists in eight chemical forms (alpha-,
beta-, gamma-, and delta-tocopherol and alpha-, beta-, gamma-, and
delta-tocotrienol) that have varying levels of biological activity.
Alpha- (or α-) tocopherol is the only form that is recognized to meet
human requirements.
Serum concentrations of vitamin E (alpha-tocopherol)
depend on the liver, which takes up the nutrient after
the various forms are absorbed from the small intestine.
The liver preferentially resecretes only alpha-tocopherol
via the hepatic alpha-tocopherol transfer protein;
whereas the liver metabolizes and excretes the other
vitamin E forms.
As a result, blood and cellular concentrations of other
forms of vitamin E are lower than those of alpha-
tocopherol and have been the subjects of less research.
Antioxidant Activity of Vitamin E
Vitamin E protect cells from the damaging effects of free radicals,
which are molecules that contain an unshared electron. Free radicals
damage cells and might contribute to the development of
cardiovascular disease and cancer.
Unshared electrons are highly energetic and react rapidly with oxygen
to form reactive oxygen species (ROS). The body forms ROS
endogenously when it converts food to energy, and antioxidants might
protect cells from the damaging effects of ROS.
The body is also exposed to free radicals from environmental
exposures, such as cigarette smoke, air pollution, and ultraviolet
radiation from the sun.
Vitamin E is a fat-soluble antioxidant that stops the
production of ROS formed when fat undergoes oxidation.
One study of approximately 90,000 nurses found that the incidence of heart
disease was 30% to 40% lower in those with the highest intakes of vitamin
E.
Among a group of 5,133 Finnish men and women followed for 14 years,
higher vitamin E intakes from food were associated with decreased mortality
(Deaths) from CHD.
Roles in Cancer
Vitamin E protect cell constituents from the damaging effects of free
radicals that, if unchecked, might contribute to cancer development.
Vitamin E might also block the formation of carcinogenic nitrosamines
formed in the stomach from nitrites in foods and protect against cancer
by enhancing immune function.
Roles in Eye Health
Age-related macular degeneration (AMD) and cataracts are among the
most common causes of significant vision loss in older people. Their
etiologies are usually unknown, but the cumulative effects of oxidative
stress have been postulated to play a role.
Therefore, nutrients with antioxidant functions, such as vitamin E,
could be used to prevent or treat these conditions.
Roles in Congnitive decline
The brain has a high oxygen consumption rate and abundant
polyunsaturated fatty acids in the neuronal cell membranes.
Researchers hypothesize that if cumulative free-radical damage to neurons
over time contributes to cognitive decline and neurodegenerative diseases,
such as Alzheimer’s disease, then ingestion of sufficient or supplemental
antioxidants (such as vitamin E) might provide some protection.
This hypothesis was supported by the results of a clinical trial in 341 patients
with Alzheimer’s disease of moderate severity who were randomly assigned
to receive a placebo, vitamin E and selegiline.
Over 2 years, treatment with vitamin E and selegiline, separately or together,
significantly delayed functional deterioration and the need for
institutionalization compared to placebo.
Recommended Dietary Allowances (RDAs)
International Units and Milligrams