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Materi2 Webinar11
COVID-19 Pandemic
Umi S. lnt ansari
Dept Pat ologi Klinik & Kedokt eran Laborat orium
FKKMK-UGM
Curriculum vitae
EDUCATION
PhD Program, Universitas Gadjah Mada, 2016
Specializat ion in Clinical Pat hology (main int erest : immunology), July 2007.
Vrije Universiteit Amsterdam- Universitas Gadjah Mada, Diploma in
Immunology, April 2004
Master in Tropical Medicine, Universitas Gadjah Mada, February 1999,
Medical Doctor: Universitas Gadjah Mada February 1995,
EMPLOYMENT
Assistant Professor, Clinical Pathology-Faculty of Medicine, Universitas
Gadjah Mada,
Teach undergraduate and graduated students
Guide undergraduate and graduated student on laboratory work and
research
Consultant on clinical pathology laboratory, Sardjito's hospital
Conduct studies in immunology field
Introduction: : Covid 19 course of disease
12.31.19 1.13.20 1 . 3 0 . 2 o
O f f ic i a l s in W The first case T h e W o r ld H e a l t h
u h a n , C h in a o u t s id e o f C h in a Or g a n i z a ti o n
re p o r t e d d o ze n s w a s r e p o r t e d ( W H O ) d e c la r e d t h e
o f ca se s of
j
in Thailand. outbreak a "public
p n e u m o n ia o f
h e a lt h e m e r g e n c y
conTm
u n k n o w n ca u se .
-----------------------------------------
of in te r na tional
1 I I
1.7.20 2 . 6 . 2 o 3.11.20
C h i n e s e o f f ic i a l s The first death W H O d e c la r e d
id e n t if ie d t h e n o v e l on American soil the outbreak
c o r o n a v ir u s . o c c u r r e d in a p a n d e m i c .
California.
1.21.2o
T h e U .S . a n n o u n c e d
t h e f ir s t c o n f ir m e d
c a s e in W a s h i n g t o n
state.
Geographic distribution
g(g k
Wor ld Health
organization
search by country. Territory or Area
Covid-19 Response Fund
Donate
~
W H O C or onav i r us D i seas e ( C O V I D - 19) D as hboar d Overview Data Table Explore
Data last updated: 2020/85, 3OOpm CEST
E
69Hii
6@.
Bubble
Map
Deaths
Total V
206,709
696,147
deaths
0 OownklaCI Map Data
Source Wonid ieanth Organization
G l obal l y , as of 3: 00pm C E S T , 5 A ugust 2020, t her e have been 18, 354, 342 conf i r m ed casesO-·
COVID-19, including 696,147 deaths, reported to WHO.
COVID-19 DI INDONESIA
INFO TERKINI: Uji PCR sebanyak 963.602 orang sudah diperiksa dan hasil negatif sebanyak 840.099
JUMLAH TERPAPAR
COVID-19 DI INDONESIA
orang. Terkonf irm asi Co v I D -19 mencap ai 123 .50 3 orang , sembuh 7 9 .306 orang , dan meninggal Update 8 Agustus 2020 PI. 12.00 WIB
dunia 5.658 orang , yang tersebar di 34 provinsi dan 480 kabu pa t e n/k ot a. Pen g ujian an t igen
berbasis real time Polymerase Chain Reaction (PC) dilakukan di selur uh Indonesia. Gunakan
masker untuk lindungi diri dan lindungi sesama, cuci tangan pakai sabun, hindari kerumunan dan @2.277 1 7 4 9 6s
DAERAH TELAH MENETAPKAN
#ProduktifAmanCovicdl9 #CuciTangan #MaskerUntukSemua #JagaJarak #AdaptasiKebiasaanBaru
3±±es .1.l.e.
@11.692 @30.565 A LM A TKES ME DIS DAN NON MEDIS TERSEBAR DI 34 PROVINSI, 480 KABUPATEN/KOTA
PENAN GA NAN BERSKALA BESAR
9 6 3 . 6 0 2 1.693.880 38.268.451 43.114%
Surnber. K@renterian Kesehatan
ORANG Sp£SIMEN
TESE aAR DI 34 PROV INSl TESEAR DI 26 PROV INSI
UPDATE TERPAPAR COV ID -19 DI DUNIA
TE RSEBA R DI 2 6 N E G A R A DAN W IL A YA H / T E IT O R IA L
r b C u a u r e a c o o 1 f a 0 . t . t r C u fu r t o o l Updat e 8 Ag u t us 2020 Pt , 12.0 0 w I8
SEBARANKUMULA'TIF KASUSAKTIF
•°
21.559,41 7
3 Inda 2,027,074 4 1,585 1,180,004,385 310
c 4 Rusi
Atrla Selat an
877,135
538,164
14,725
9,604
145,934,462
59,308,690
1o1
162
0
eloiko 456,100 49,698 128,932,753 3485
0
5°
Peru Chili 447,624 20,228 32,971,854 613
olornbia 366,671 9,889 19,116,201 517
6 l e
9 ran 345,714 11,624 50,882,891 228
ht.
10 Indonesia 120,117 17,976 81,992,949 1
2 23,503 5,658 269,603,400 21
IRE(EI DAEAW
MUMTUMUATIF ASAT( 0 0 - 1% umber: War.letMeatth Oganiatie(WNO), warloreten ifs (UN Paolion win), B88
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--IN-F-O--R-M-A-S, ICOVID-19
II : EE:
i, www co@d i9 .s o i
g!:?/
,} CENTER
119
No: 146/0100/099/0VID-19/BNP8/08082020
stages of illness & timing of therapies
Stage II Stage III
(Pulmonary Phase) (Hyperinflammation Phase)
I
llA 1 118
I
I
Viral response phase
Time course
Siddiqu HK, Mehra MR, Journal of Heart and Lung Transplantation, 2020
Timeline of coronavirus onset
Shortness of breath
NUMBER OF DAYS°
Isolation/hospitalization
Low virus titer Supportive care...
.... Bild n r
r .....;.a..
i
Normal
mmune
response
ml> Recovery
t•
A
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SARS-CoV-2
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CD4
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----------►
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IL6/IL 10/TNF/ T cell
Monocyte
Macrophage
C S F / R A N ~
Neutrop
- - - - - - - -
hil t
Anti-cytokine storm treatment:
Cytokine Cytokine antagonists/mesenchymal stem
Storm cells/convalescent plasma/chloroquine,
hydroxychloroquine/corticosteroid/
alternative medicine and others
Lung injury/septic
#
shock/organ failure/
coagu loapathy...
High virus titer ICU
FI G U R E 1 Maj or blood leukocyt e, cyt okine changes, and t her apy st rat egies in mild vs. severe SA RS-CoV-2 inf ect ion. Concept ual model of the
I
interplay between immune activation and clinical pathology from patients with mild vs. severe infection, as well as current therapeutic strategies
wit h BioRender (ht t ps:// a .biorender.com/ )
Cytokine storm induced by COVID-19 infection in some patients results in organ
damage followed by immune failure, organ failure, secondary infection, and
death.
Pre-Erstng
inflammnatory
Candrtic
cytokine
Clotting
storm 4 Renal Failure
Shock •
Cardiac
Damage
Laboratory testing strategy recommendations for COVID-19: interim guidance, 22 March 2020. https://apps.who.int
The Need for a Rapid Detection Method and Portable Detection
Devices
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TRANSPORTABLE
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To determine the actual cost ofthe
test process, each step of the service
test chain must be ident if ied and
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evaluated for it's contribution to
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POCT is an increasingly popular means of delivering laboratory testing.
POCT is not freely interchangeable with traditional core lab instrumentation in all
patient care situations
Quality issue in POCT
less analytically sensitive
more at risk of
interferences
•
· ~....- - - - - - - - - - ---= = Surveillance SARS-CoV-2
antibodies
RT-PCR
Infection Diagnosis (See Diagnostic
J
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Staging
Patient
Various IVD
Management
Overt Disease Prognostication Tests
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Death Therapeutic M onitoring
Epidemiological Anti-SARS-CoV
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Etiology diagnosis of covid 19 Infection
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lgM
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SARS-CoV-2
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neutralizing antibodies Experimental therapy
http://mbio.asm.org/
The challenge in covid 19 pandemic
Current Diagnosis method available for Covid 19
''i ) [)
'4 -'
Next generation Whole genome sequencing Highly sensitive and specific, 1-2 day High expertise
sequencing Provide all related information; Equipment dependency and high cost
(NGS)
Can identify novel strain Highly sophisticated Lab required
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detection Higher sensitivity consumables
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--- Virus isolation from respiratory tract Stool PCR lgG antibody
Kemkes: REV-OS Ped o m an P2 COV ID-19 13 Juli 2020
expressed only when the virus is actively replicating identify acute or early
infection.
false-positive results: if the ab on the test strip also recognize antigens of viruses
other than COVID-19 .
RT-qPCR
Low performance of rapid antigen detection test as frontline testing for
COVID-19 diagnosis Detected Not detected
Little use in
Can nott pandemic
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role out setting
SARS
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POSITIVE NEGATIVE
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Ag Respi-Strip Results
equivalent to 9.4 x 10 copies/mL
1. COVID-19 Ag Respi-Strip results according to viral load.
• «
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o l e i diiwi. est t i r e t/ICM SAMS
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Usulan PDS PatkLin
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terkait perijinan produk tes kit COVID-19 denaan Kemenkes tanaaal 20/3/2020
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Serology: Antibody test
In cases where NAAT assays are negative and there is a strong epidemiological
link to COVID-19 inf ect io n, paired serum samples (in t he acut e and convalescent
phase} could support diagnosis once validated serology tests are available.
Serum samples can be stored for these purposes.
Paired samples are necessary for confirmation with the initial sample collected
in the first week of illness and the second ideally collected 2-4 weeks later
C -
100
98.6
• positive detection rate was only 51.9%
in a single PCR test, but significantly
c
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L. Guo et al., Clin. Infect. Dis. (2020), doi:10.1093/cid/ciaa310.
The factors that influence antibody detection performance
False
Previously infection by SARS CoV
Positive
Anti RBD
(SP): 11-14
Collecting time samples: Different time days
seroconversion
Anti NP: 7-12
False days
Negative
Host immune factors: different
immune responses to NP and SP
among people.
Hasil survey performa RDT antibodi SARS COV-2
95%CI 95% Cl
ETTIE] 43,84 42,32 45,36 Akurasi 76,95 75,68 78,21
58,28 52,83 63,73
EIT I E E 54,33 48,70 59,97 Sensitivitas
43,01 41,43 44,58 Spesifisitas 78,43 77,15 79,71
EH7ZIEL 7,00 4,12 7,82 PPV 17,68 13,46 18,87
EE7 92,26 91,41 93,11 NPV 95,94 95,33 96,56
AI7 0,95 -0,15 2,05 +LR 2,70 0,91 4,50
) 1,06 0,74 1,39 -LR 0,53 0,31 0,76
ETl /_ Perhimpunan Dokter Spesialis Patologi Klinik dan Kedoteran
( ) Laboratorium Indonesia
Masalah teknis yang ditemukan
•
• Garis hasil samar / tidak jelas (Biolidies, Boson, Eagteeare, Edan, Genbody,
Hasil Tidak Wondfo, Vazyme, VivaDiag, Livzon, High Top, SD Biosensor, Star)
Jelas • Hasil sangat tebal seperti kotoran ulang = non reaktif (Egens)
{
• Strip sangat kecil (Aero)
Kit Kurang • Pipet sulit digunakan (High Top, Livzon)
Lengkap • Jumlah lgM don lgG tidak sama (Livzon)
• Tidak ado buffer don pipet (Edan, New Test)
Prosedur
unclear { • SOP rumit (Aero, Edan)
• buffer ditetes 20-30 detik sesudah sampel, strip sangat kecil (Aero)
Perhimpunan Dokter Spesialis Patologi Klinik dan Kedoteran
Laboratorium Indonesia
Kesimpulan
Banyak ROT beredar yang tidak memiliki rekomendasi/ sertifikasi gugus
tugas/ FDA/ CE
• Performa lgG secara umum lebih baik dibanding lgM anti SARS COV-2
• Ditemukan hasil PCR positif disertai hasil lgG reaktif, yang mengindikasikan lgG dapat
timbul pada fase akut
• Dijumpai banyak masalah teknis terkait pemakaian ROT COVID-19
Rekomendasi
• Pem ilihan RDT per lu dipert im bangkan dengan mem per hat ikan perf or ma dan masalah
teknis yang timbul
• Perlunya diadakan post marketing surveillance dari user untuk setiap masalah yang
ditemukan di lapangan
• Perlunya pelatihan untuk petugas (SDM) yang akan melakukan pemeriksaan RDT
terutama dalam hal pengerjaan dan interpretasi
• Berkaitan dengan rendahnya validitas RDT, tidak direkomendasikan penggunaan RDT
secara tunggal, namun dikombinasikan dengan parameter lain yaitu klinis (formulir
sesuai buku pedoman Kememkes) serta pemeriksaan lab lain (PCR, CBC)
• Tidak merekomendasikan penggunaan RDT antibody tunggal untuk skrining dan
diagnosis COVID-19 namun untuk surveilans (seroprevalence) dengan
mempertimbangkan performa RDT yang akan digunakan
Main laboratory abnormalities observed in adult patients with
unfavorable COVID-19 progression (Modified 1-30)
aboratory Test bnormalities otential clinical significance
Bacterial (super)infection
Increased white bloodcell
Bacterial (superinfection
omplete blood Increase neutrophil count
Decreased immunological response to
ount Decreased lymphoc yte count the virus
Decreased platelet count Consumption (disseminated)
coagulopa thy
lo o d ases Estimated modifications Important in critical care managment
l bum l n Decreased Impairment of liver function
Pulmonary injury and/or widespread
Increased
organ damage
Increased Liver injury and/or organ damage
Increased Liver injury and/or organ damage
otal bilirubin Increased Liver injury
reatinin Increased Kidney injury
rea Estimated Increase Kidney Injury
ardiac tror nin Increased Cardiac injury
Activation of blood coagulation and/or
Increased
disseminated coagulopathy
Activation of blood coagulation and/or
rothrombin Time Increased
disseminated coag ulo pathy
rocalcitonin Increased Bacterial (super)infection
Increased Severe viral infection/viremia/viral
reactive protein
sepsis
erritin Increased Severe inflammation IFCC Information
Guide on COVID-19
okines IL-6 Increased Cytokine storm syndrome
- IFCC. www.ifcc.org
C-REACTIVEPROTEIN
• It has higher sensitivity and specificity than total neutrophils and I/T
ratio (immature granulocyte to total).
3#
Respiratory
tract infection
·
Lr
··w
0 0
Figure 1]Functional CRPpatways. In response to cytolines suchas IL6 and IL 1$. hepatic expression of CRPincreases
dramatically. CirculatingCRPopsonie s bacteria andapoptotic cells, facilitatingtheir clearancevia the complement
system and Foy/mediated phagocytosis. CRPligation might controute to the releaseby phagocytic cells of
immunomodulatory cytolioes such as IL10. Evidence is mountingtat plasma CRPdeposited onto inflamed tssue
breaks into biologcaly active monomeric subunits, to whichhave been attributed arangeof proinflammatoryeffects .
Abbreviations. CRP
foeti nwnt ale p lnhaenhaihritrlre
Original article
C-reactive protein levels in the early stage of COVID-19
L Wang
IN FO AR T I C L E A B S T R A C T
Hitorigue de tarncie Ba oiground c0OVID 19 is a new infect ious dise ase , for w hich there
ru le 26 mar a0U th er efo re necessary to explore biomarkers to determine the ext ent of lu
Accept& e 30 mars 20.20 Objective. We ai m ed to a ssess the use fulness c& CP leve ls in the e a r l y s t,
Dispou ble sur Interre t le 11 Mr« h 20t th em w ith tung lesions and severe prese nt at io n
,
C reactive protein
CT scores
%z ·
15
- S e v e n t y group - Seventy group
-« Mild group -« Mild group
compared with severity 10 compared withseverity
5«
%
group.P<0.05 group.P<0 05
c:i.
Stage l ·. stage s
: Initial
•£ z0 •
•
Stage 2 : Progression stag
A v , r a g e d se e sf.e d
3 4 Stage 4 : Recove ry stage 2 3
Stage of illness Stage of illness
! ~
Thyroxine Calcitonin
Heart
Muscle
Skin
Adipose Tissue
e $ Testes
No. (%)
Characteristic
Total Asymptomatic l\Iild Moderate
(n =257) (n=22) (n = 78) (n= 140) (n= 17)
Co-infections 242 21 (95.5) 75 129 (92.1) 17 (100)
(94.2) (96.2)
any virus isolated 81 (31.5) 4(8.2) 26 45 (32.1 6(35.3)
(33.3)
any bacteria 236 21(95.5) 75 124(88.6) 16 (94.1)
isolated' (91.8) (96.2)
any fungi isolated° 60 (23.3) 6 (27.3) 18 31 (22.1) 5(29.9)
(23.8)
Bacteria-virus 77 (30.0) 4 (18.2) 26 42 (30) 5(29.5)
(33.3)
Bacteria-fungi 61 (23.7) 6 027.3) 20 30 (21.9 5 (29.5)
(25.6)
Virus-fungi 24 (9.3) 1(4.5) 11 11 (7.9) 1(5.9)
(14.1)
Bacteria- virus-fungi 23 (8.9) 1(4.5) 10 (7.1) 1(5.9)
Procalcitonin
Contents lists available at ScienceDirect
serial procalcitonin measurement may play
Clinica Chimica Acta
journal homepage: www.elsevier.com/locate/cca
a role for predicting evolution towards a
more severe form of disease
reflect bacterial coinfection in those
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Abnormal Clotting Optimal time for
B
D-Dimer
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and blood clots is
potential
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cytokines
D-dimer
a marker for increased coagulation processes in the body.
'
No
Is D-dimer above 1,000-2,000 ng/ml?
fpvr prophylactic anticoagulation (consider
higher dose than normal, if D-dimer is
moderately elevated).
]rs
Follow serial D-dimer (If D-dimer rises above
Yes 1,000-2,000 ng/mu, then re-consider
Contraindication to anticoagulation?
anticoagulation).
]
Check fibrinogen level and/or thromboelastography (TEG)
The role of anticoagulation remains unknown and highly controversial. This is one general approach which could
be reasonable, but treatment decisions should always be individualized.
f ltrnt Seel el Critical Care, ty r ut C r it
15TH interim guidance on recognition and management of coagulopathy in COVID-19
1. D-dimer* I
I
2. Prothrombin time
I
3. Platelet count I
4. Fibrinogen**
vI
I
V
Admit (even if no other If admitted for other clinical reasons, If discharged, use as baseline
concerns) Monitor daily for
Monitor once or twice daily if re-presenting with symptoms
l
•
In all patients