Professional Documents
Culture Documents
1.0 INTRODUCTION
Pectin is high molecular weight acid polysaccharide, primarily made up of α-(1-4) linked
Dgalacturonic acid residues with a small number of rhamnose residues in the main chain and
arabinose, galactose and xylose on its side chain (Galiotou-Panayotou et al., 2013). Pectin is
found in the plant cell wall where it contributes to cell wall rigidity (Steven et al., 2000). Three
major pecticpolyssacharide groups are recognized with all containing D-galacturonic acid to a
greater or a lesser extent (Abe et al., 2008). They are homogalacturonan (HG) which is a linear
polymer formed by D-galacturonic acid which can be acetylated and/or methyl esterified.
attached to the galacturonic residues. Industrially extracted pectin is used for pectinase
production using Aspergillus species. Pectinase is a generic name for a family of enzymes that
catalyze hydrolysis of the glycosidic bonds in the pectic polymers (Yogesh et al., 2009).
Lyases (PL) (McCready, 2010). Pectinase is sourced from different genera of bacteria, yeasts and
Fusarium and Rhizopusare the genera most frequently used over the years, with strains of
Aspergillus, Penicillium and Erwiniamainly used for enzyme production studies (Aschoff et al.,
2015). The choice for microbial source for pectinase production depends on the type of culture
required for their production, (solid-state or submerged fermentation), number and type of the
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and thermal stability of the enzymes, and genotypic characteristic of the strain (wild type,
Pectinases are applied in several conventional industrial processes, such as textile, plant fibre
processing, oil extraction, treatment of industrial waste water, containing pectinacious material
etc. Pectinases have also been reported to work on purification of viruses and in making of paper
(Reena et al., 2005). The frequent use of fruits such as mango, orange and pineapple for
production of juices, nectars, concentrates, jams, jelly powders and flakes generate lots of wastes
in the form of peel wastes and seed kernels which could bring about environmental pollution
(Bali, 2003). The current study is focused on harnessing the wastes generated from fruits juice
industry in the form of peels into pectin. The pectins extracted from those peals as the only
carbon source for Aspergillus fumigates and Aspergillus niger in submerged fermentation system
for pectinase production. The optimal pH and temperature for for pectinase industrial activity
This study is aim to determine the effect of pH and temperature on the activity of pectinase
To identify the fungal species using its microscopic and microscopic features.
(Aspergillus niger).
substrate.
carbon source.
3
CHAPTER TWO
All citrus trees belong to the single genus Citrus and remain almost entirely interfertile. This
includes grapefruits, lemons, limes, oranges, and various other types and hybrids. As the
interfertility of oranges and other citrus has produced numerous hybrids and cultivars, and bud
mutations have also been selected, citrus taxonomy is fairly controversial, confusing or
inconsistent (Aguilar and Huirton, 2010). The fruit of any citrus tree is considered a hesperidium,
a kind of modified berry; it is covered by a rind originated by a rugged thickening of the ovary
wall. Different names have been given to the many varieties of the species. Orange applies
primarily to the sweet orange – Citrus sinensis (L.) Osbeck. The orange tree is an evergreen,
flowering tree, with an average height of 9 to 10 m (30 to 33 ft), although some very old
specimens can reach 15 m (49 ft). Sweet oranges grow in a range of different sizes, and shapes
varying from spherical to oblong. Inside and attached to the rind is a porous white tissue, the
white, bitter mesocarp or albedo (pith). The orange contains a number of distinct carpels
(segments) inside, typically about ten, each delimited by a membrane, and containing many
juice-filled vesicles and usually a few seeds (pips) (Sinclair et al., 2005). When unripe, the fruit
is green. The grainy irregular rind of the ripe fruit can range from bright orange to yellow-
orange, but frequently retains green patches or, under warm climate conditions, remains entirely
green. Like all other citrus fruits, the sweet orange is non-climacteric. The Citrus sinensis group
is subdivided into four classes with distinct characteristics: common oranges, blood or pigmented
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Other citrus groups also known as oranges are:
Bitter orange (Citrus aurantium), also known as Seville orange, sour orange (especially
when used as rootstock for a sweet orange tree), bigarade orange and marmalade orange.
Like the sweet orange, it is a pomelo x mandarin hybrid, but arose from a distinct
hybridization event.
Bergamot orange (Citrus bergamia Risso), grown mainly in Italy for its peel, producing a
primary essence for perfumes, also used to flavor Earl Grey tea. It is a hybrid of bitter
orange x lemon.
Citrus trifoliata). It often serves as a rootstock for sweet orange trees and other Citrus
5
Plate 1: Orange fruit. (Bai et al., 2016)
Orange juice is obtained by squeezing the fruit on a special tool (a juicer or squeezer) and
collecting the juice in a tray underneath. This can be made at home or, on a much larger scale,
industrially. Brazil is the largest producer of orange juice in the world, followed by the United
States, where it is one of the commodities traded on the New York Board of Trade (Widmer et
al., 2009). Frozen orange juice concentrate is made from freshly squeezed and filtered orange
juice
Sweet orange oil is a by-product of the juice industry produced by pressing the peel (Bai et al.,
2014). It is used for flavoring food and drinks and also in the perfume industry and aromatherapy
for its fragrance. Sweet orange oil consists of approximately 90% D-limonene, a solvent used in
various household chemicals, such as wood conditioners for furniture and along with other citrus
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oils detergents and hand cleansers (McCready, 2010). It is an efficient cleaning agent with a
pleasant smell, promoted for being environmentally friendly and therefore, preferable to
petrochemicals. D-limonene is, however, classified as irritating to the skin and as very toxic to
aquatic life in different countries. Marmalade preserves are traditionally made with Seville
oranges, which are less sweet. All parts of the fruit are used: the pith and pips (separated and
placed in a muslin bag) are boiled in a mixture of juice, slivered peel, sliced-up flesh, sugar, and
water to extract their pectin, which helps the conserve to set. Gardeners use orange peel as a slug
61.6 calories
0.16 g of fat
15.4 g of carbohydrate
12.2 g of sugar
The same orange provides the following percentages of a person’s daily requirement of several
guidelines:
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Nutrient Percentage of daily requirement for adults
Thiamin 10.36%
Folate 9.83%
Choline is an important nutrient in oranges that helps with sleep, muscle movement, learning,
and memory. Choline also aids the transmission of nerve impulses, assists in the absorption of
fat, and reduces chronic inflammation. Zeaxanthin is a type of carotenoid antioxidant that can
reduce inflammation (Reena et al., 2005). it can positively benefit heart, liver, skin, and eye
health.
2.2 Pectin
The plant cell wall is a complex macromolecular structure that surrounds and protects the cell,
and is a distinguishing characteristic of plants essential to their survival (Alkorta et al., 2008). As
a consequence of limited mobility, plants are plastic in their ability to withstand a variety of
harsh environmental conditions and to survive attack by pathogens and herbivores. The structure
formed by the polysaccharides, proteins, aromatic, and aliphatic compounds of the cell wall
8
enables plants to flourish in diverse environmental niches. Cell wall structure is continually
modified to accommodate the developmental stage and the environmental condition. The plant
cell lays down the middle lamella and the primary wall during initial growth and expansion of
the cell (Albersberg, et al., 2003). In many cells, the wall is thickened and further strengthened
by the addition of a secondary wall. The primary wall is thought to contribute to wall structural
integrity, cell adhesion, and signal transduction (Perez-Cacho and Rouseff, 2008). The structural
constituents of a young plant cell wall are cellulose, hemicellulose and pectic substances (Alonso
et al., 2003). The cellulose micro fibrils provide strength to the cell wall, while hemicelluloses
and pectic substances act as the cementing substance for the cellulose network. Pectins or pectic
substances contribute to complex physiological processes like cell growth and cell differentiation
and so determine the integrity and rigidity of plant tissue. Pectic substances are polysaccharides
of high molecular weight, with a negative charge, appearing mostly in the middle lamella and the
primary cell wall of higher plant (Penniston et al., 2008). They are formed by a central chain
containing a variable amount although in high proportion of galacturonic acid residues linked
through α-(1-4) glycosidic bonds partially esterified with methyl groups. This molecule is known
as pectin, while the demethylated molecule is known as polygalacturonic acid or pectic acid.
Pectin was discovered in 1790 by Vauquelin and later in 1825 crudely characterized by
Braconnot (Amorim and Amorim, 2007). Compared with young, actively growing tissues,
lignified tissues have a low content of pectic substances. The content of the pectic substances is
very low in higher plants usually less than 1%. They are mainly found in fruits and vegetables,
constitute a large part of some algal biomass (up to 30%) and occur in low concentration in
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Pectin is naturally found in a number of plants namely: lemon peel, orange peel, apple pomace,
carrots, sunflower-heads, guava, mangoes and papaya (Arenas-Ocampo et al., 2003). The
European countries, Switzerland and USA largely produce pectin either from apple pomace or
peels of citrus fruits. Evaluation and standardization of pectin is based on its ‘Gelly-Grade’ that
is, its setting capacity by the addition of sugar. Usually, pectin having ‘gelly grade’ of 100, 150
and 200 are recommended for medicinal and food usuages (Galiotou-Panayotou and Kapantai,
2013).
carrying out the hydrolysis in an acidic medium of the inner part of the rind of citrus peels, for
instance: Citrus limon (or Lemon) and Citrus aurantium belonging to the family Rutaceae, or
from apple pomace Malus sylvestris Mill (Syn: Pyrus malus Linn, family: Rosaceae).
2.2.1.2 Geographical Source: Lemon and oranges are mostly grown in India, Africa and other
tropical countries. Apple is grown in the Himalayas, California, many European countries and
the countries located in the Mediterranean climatic zone. One of the richest sources of pectin is
lemon or orange rind which contains about 30% of this polysaccharide (Aschoff et al., 2015).
Pectins are a family of covalently associated galacturonic acid-rich plant cell wall
polysaccharides. About 70% of all pectin contains galacturonic acid and all pectin
polysaccharides contain galacturonic acid linked at the O-1 and O-4 positions of the polymer.
The structural elements of pectin are classified into two families; galacturonans and
residues (El Hadi et al., 2013). The branched can either be branched or unbranched. The
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backbone in rhamnogalacturonans, however, contains diglycosyl repeating units of α-L-
rhamnose-(1,4)-α-D-galacturonic acid. The rhamnose residues are ramified at the O-4 and O-3
positions with polymeric side chains that include arabinose and galactose residues at other
positions. In pectin, four different types of polymeric side chains might exist; arabinans,
galactans, type I arabinogalactans, and type II arabinogalactans. The chemical structure of pectin
by twenty different linkages (Chadha et al., 2005). The overall structure of pectin is explained in
terms of smooth and hairy regions. The smooth regions contain linear chains of homo or
heteropolymer, whereas the hairy region contains simple or complex side chains (Bai et al.,
2016).
hetero galacturonans. Homogalacturonans form the smooth region of pectin, that is unbranched
Homogalacturonans accounts form about 60% of all pectin found in different living beings. In
the polymer is substituted with complex side chains like rhamnose, it forms
rhamnogalacturonans.
consisting of a long chain of alternating L-rhamnose and D-galacturonic acid residues (Albers et
al., 2004). In some cases, the rhamnose residues might even be replaced by a variety of L-
arabinosyl and D-galactosyl-containing side chains. A small number of glucuronic acid and 4-O-
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methyl glucuronic acid residues might be present. Rhamnogalacturonans account for about 20-
35% of the total pectin content in nature, but the amount is as high as 75% in the soybean plant.
Based on the type of modifications of the backbone chain, The American Chemical Society
2.2.3.1 Pectinic Acids: These are the galacturonans with various amounts of methoxyl
groups.Pectinates are normal or acid salts of pectinic acids. Pectinic acid alone has the unique
property of forming a gel with sugar. The salts of pectinic acids are either normal or acid
pectinates.Under suitable conditions, pectinic acids are capable of forming gels with sugars and
acids or if suitably low in methoxyl content with certain metallic ions (Neill, 2001).
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2.2.3.3 Pectic Acids: These are the galacturonans that contain negligible amounts of methoxyl
2.23.4 Protopectin: This is a parent pectic substance and upon restricted hydrolysis yields pectin
or pectinic acid. Protopectin is occasionally a term used to describe the water-insoluble pectic
substances found in plant tissues and from which solublepectic substances are produced (Chadha
et al., 2005).
charged and very much hydrated particles. 2. Dissolves more swiftly in water, if previously
moistened with sugar syrup, alcohol, glycerol or if first mixed with 3 or more parts of sucrose.
Chemical Constituents Pectin occurs naturally as the partial methyl ester of a (1→4) linked (+)
– polygalacturonate sequences interrupted with (1–2) – (–) – rhamnose residues. The neutral
sugars that essentially form the side chains on the pectin molecules are namely: (+) – galactose,
(–) –arabinose, (+) – xylose, and (–) – fructose. (Bai et al., 2014)
The specific method of preparation of pectin is solely guided by the source of raw material i.e.,
lemon/orange rind or apple pomace; besides the attempt to prepare either low methoxy group or
high methoxy group pectins. In general, the preserved or freshly obtained lemon peels are gently
boiled with approximately 20 times its weight of fresh water maintained duly at 90ºC for a
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duration of 30 minutes. The effective pH (3.5 to 4.0) must be maintained with food grade lactic
acid/citric acid/tartaric acid to achieve maximum extraction. Once the boiling is completed the
peels are mildly squeezed to obtain the liquid portion which is then subjected to centrifugation to
result into a clear solution. From this resulting solution both proteins and starch contents are
suitably removed by enzymatic hydrolysis. The remaining solution is warmed to deactivate the
added enzymes. The slightly coloured solution is effectively decolourized with activated carbon
or bone charcoal. Finally, the pectin in its purest form is obtained by precipitation with water-
miscible organic solvents (e.g., methanol, ethanol, acetone), washed with small quantities of
solvent and dried in a vaccum oven and stored in air-tight containers or polybags (Reena et al.,
2005).
polygalacturonic acids may exert an adsorbent action in the internal layers of the intestine,
thereby producing a protective action along with Kaolin to prevent and control diarrhoea. As a
pharmaceutical aid pectin is used frequently as an emulsifying agent and also as a gelling agent
preparation of jellies and similar food products e.g., jams, sauces, ketchups. Pectin in the form of
pastes exerts a bacteriostatic activity and hence, is used frequently in the treatment of indolent
ulcers and deep wounds. A combination of pectin and gelatin find its application as an
characteristics.
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2.2.1 Feature of aspergillus niger
The Conidiophores are 400-3000um long, they are smooth and hyaline.The conidiophore
becomes dark at the apex and terminating in a globose vesicle which is 30-75um in diameter.
The metulae and phialides cover the vesicle. The phialides produce conidia that have a rough
texture, are dark brown colored, and have a diameter of 4-5um. (\Galiotou-Panayotou and
Kapantai, 2013).
oxidase (P13006), used in the design of glucose biosensors, due to its high affinity for β-
D-glucose.
The fungus also plays a role in the solubilization of heavy-metal sulfides (Huang et al.,
2008).
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Species: A. niger (Arenas-Ocampo et al., 2003).
2.3 Pectinase
Pectinases is a group of enzymes (at least seven different enzymes) involved in the breakdown of
pectin obtained from various sources. Due to the diverse group of pectin that is found in different
living organisms, pectinases are also diverse. Most common and industrially important
pectinases are divided into different groups on the basis of the differences in their substrate,
structure, and reaction mechanism (Sinclair, 2015). Some of the common pectinolytic enzymes
have important industrial applications as they are involved in the extraction and clarification of
juice and maceration of plant tissues. Pectinases are one of the major enzymes that take in the
global carbon cycle, assisting in natural waste recycling (Walton et al., 2005). Pectinases are
even termed carbon recycling agents in nature as they degrade pectin substances into saturated
and unsaturated galacturonans, which can then be catabolized to form either pyruvate or 3-
phosphoglyceraldehyde (Amorim and Amorim, 2007). Along with these applications, pectinases
are also used in degumming fiber crops, as enzyme complex for the generation of animal feed,
purifying plant viruses, and in the extraction of oils. Some pectinases act as virulence factors as
these enzymes help in the degradation of pectin found in the cell of plants (El Hadi et al., 2013).
Pectinases might differ in structure and mechanism on the basis of their source, like the pectinase
from fungi might be different from that of bacteria. Bacterial pectinases tend to be alkaline,
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Pectinases can be extracted from fungi such as Aspergillus niger. The fungus produces these
enzymes to break down the middle lamella in plants so that it can extract nutrients from the plant
tissues and insert fungal hyphae. Pectinase can be produced by a variety of microorganisms.
These enzymes act on pectin, which is the major component of middle lamella in plant cell wall
(Penniston et al., 2008). Pectinolytic enzymes are classified according to their mode of attack on
the galacturonan part of the pectin molecules such as protopectinases, esterases and
depolymerases. As we know that microbial enzymes work depends upon the type of enzymes
application, temperature, concentration, and pH and so on, therefore, pectinase enzyme also
differentiated according to their physical and chemical factors too. The biochemical structures of
pectinases include members of all the major classes and the structure–function relationship,
prototypes for related family member and the molecular characterization of pectinolytic enzymes
is also well documented. Furthermore, it provides a bird’s eye view of the possible application of
Depending on the source of the enzymes, their substrates, and the reaction mechanism,
homogalacturonan to form monomeric units (Ramsey, 2005). These enzymes act on the 1-4-α-D-
galactosyluronic linkages between the galacturonic residues. Most of the polygalacturonases are
endo-enzymes that act on the linkages randomly to depolymerize the chain or reduce the length
17
of the polymer. The natural substrate of endo-polygalacturonase is homogalacturonan; however,
other compounds like oligogalacturonides might also act as a substrate depending on the nature
of the substrate. A class of exo-polygalacturonase is also known where they break down the
polygalacturonates into di- and mono-galacturonates. The activity of the enzyme is determined
2.4.2.2 Pectinesterase (EC 3.1.1.11): Pectinesterases are a group of enzymes that catalyzes the
hydrolysis of methylated carboxylic ester in pectin to form pectic acid and methanol (Berld et
al., 2014). The natural substrate of pectinesterase is pectin; however, other compounds like
methyl pectate and methylated oligogalacturonides also work as substrate. The activity of
pectinesterase is enhanced or induced by (NH 4)2SO4, Mg2+, and NaCl (Chadha et al., 2005). It is
inhibited by the presence of Cu2+ and Hg2+. Most of the well-studied pectinesterase is produced
from plants; however, recently pectinesterase of bacterial and fungal origin have also been
discovered. Most pectinases are specific towards esterified pectic substances and thud, might not
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2.4.2.3 Pectin lyases (EC 4.2.2.10): Pectin lyases degrade pectic substances in a random
through transelimination reaction. Pectin lyases have an absolute requirement of Ca 2+ ions and
thus, are inhibited by chelating agents like EDTA (Amorim and Amorim, 2007). Exo-pectin
lyases catalyze the cleavage of the substrate from the non-reducing end of the polymer.
2.4.2.4 Pectatelyase (EC 4.2.2.2): Pectatelyase (PGL) cleaves glycosidic linkages preferentially
has an absolute requirement of Ca2+ ions. Hence it is strongly inhibited by chelating agents as
Microorganisms are currently the primary source of industrial enzymes: 50% originate from
fungi and yeast; 35% from bacteria, while the remaining 15% are either of plant origin. The
microbial world has shown to be very heterogeneous in its ability to synthesize different types of
pectolytic enzymes with different mechanisms of action and biochemical properties (Steven et
al., 2000). There were two fermentation techniques we can use for pectinases production, as
many other enzymes. These techniques are Solid State Fermentation (SSF) and submerged
moist solid supports, either on inert carriers or on insoluble substrates that can be used as carbon
and energy source. This process occurs in the absence or near absence of free water in the space
between substrate particles. In this system, water is present in the solid substrate whose capacity
for liquid retention varies with the type of material (McCready, 2010). In contrast, in submerged
fermentation (SmF) the nutrients and microorganisms are both submerged in water.
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Approximately 90% of all industrial enzymes are produced in SmF, frequently using specifically
processing offers an insurmountable advantage over SSF. SSF has several advantages over SmF
system such as higher concentration of products, less effluent generation, requirement for simple
equipments etc (Sinclair et al., 2005). The price of commercially available enzymes which are
al., 2003).
Microbial production of pectinases has been studied during recent years (Bali, 2003) and fungi.
However, almost all the commercial preparations of pectinases are produced from fungal sources
Pectolytic enzymes have been reported to be induced by several substances. In many cases pectin
itself has been used. Many investigators had used complex media such as beet sugar, wheat bran,
ground nut meal, citrus fruit peels etc (Bai et al., 2014). Higher cost of the production is perhaps
the major constraint in commercialization of new sources of enzymes. Though, using high
yielding strains, optimal fermentation conditions and cheap raw materials as a carbon source can
reduce the cost of enzyme production for subsequent applications in industrial processes (Chadha
et al., 2005). There are many studies that have been conducted related to the characterization of
different microbial pectic enzymes concerning their mechanisms of action and biochemical
properties. The optimal pHs that these enzymes may act range between 3.5-11, while the optimal
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Gel-filtration chromatography is a form of partition chromatography used to separate molecules
of different molecular sizes. This technique has also frequently been referred to by various other
chromatography (Arenas-Ocampo et al., 2003). The basic principle of gel filtration is quite
straightforward. Molecules are partitioned between a mobile phase and a stationary phase
(comprising a porous matrix of defined porosity) as a function of their relative sizes. A column
constructed of such a matrix, typically in bead form, will have two measurable liquid volumes,
the external volume, consisting of the liquid between the beads, and the internal volume,
consisting of the liquid within the beads (Galiotou-Panayotou et al., 2013). The external volume
is usually referred to as the void volume (V 0), while the sum of the external and internal volumes
is the total volume (V t). Following sample application, molecules larger than the pores of the
stationary phase matrix will be excluded from the internal volume within the beads and will,
therefore, migrate quite rapidly through the column, emerging at V 0, while molecules both
smaller than the matrix pores, as well as those intermediate in size, will equilibrate with both the
external and internal liquid volumes, causing them to migrate much more slowly and emerge at a
volume (V e) greater than V 0. Molecules are, therefore, eluted in order of decreasing molecular
size. The elution volume, V e, of a particular molecule depends on the fraction of the stationary
phaseavailable to it for diffusion (Alonso et al., 2003). This can be represented by the constant K
Ve=V0+Kav(Vt−V0)
Kav=(Ve−V0)/(Vt−V0)
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2.4.5 Factors affecting pectinase activity
2.4.5.1 Effect of pH: The potential of hydrogen (pH) is the best measurement for determining
the concentration of hydrogen ion (H+)in a solution. It also determines whether the liquid is
acidic, basic or neutral. Generally, all liquids with a pH below 7 are called acids, whereas liquids
with a pH above 7 are called bases or alkalines. Liquids with pH 7 are neutral and equal the
acidity of pure water at 25 C°. You can determine pH of any solution using the pH indicators
Pectinsae are protein substances that contain acidic carboxylic groups (COOH –) and basic amino
groups (NH2). So, the enzymes are affected by changing the pH value. pectinase has a pH value
that it works at with maximum efficiency called the optimal pH. If the pH is lower or higher than
the optimal pH, the pectinase activity decreases until it stops working (Sinclair et al., 2005).
2.4.5.2 Concentration of Substrate: In the presence of a given amount of pectinase, the rate of
enzymatic reaction increases as the substrate concentration increases until a limiting rate is
reached, after which further increase in the substrate concentration produces no significant
change in the reaction rate. In other words, the pectinase molecules are saturated with substrate.
The excess substrate molecules cannot react until the substrate already bound to the pectinse has
reacted and been released (or been released without reacting) (Abe et al., 2008).
2.4.5.3 Effect of Temperature: The protein nature of the pectinase makes them extremely
sensitive to thermal changes. Pectinase activity occurs within a narrow range of temperatures
compared to ordinary chemical reactions. Pectinase has a certain temperature at which it is more
active. This point is called the optimal temperature, which ranges between 37 to 40C°. The
pectinase activity gradually lowers as the temperature rises more than the optimal temperature
until it reaches a certain temperature at which the pectinase activity stops completely due to the
22
change of its natural composition. On the other hand, if the temperature lowers below the
optimal temperature, the pectinase activity lowers until the enzyme reaches a minimum
temperature at which the enzyme activity is the least. The pectinase activity stops completely at
0C°, but if the temperature rises again, then it gets reactivated once more (Bai et al., 2016).
velocity of the reaction proportionately increases. The concentration of the enzyme is important
in chemical reaction as it is needed to react with the substrate. Often a small amount of enzyme
can consume a large amount of substrate (Reena et al., 2015). ". However, with the increase of
enzyme concentration, the effectiveness of the active sites also increases, so these active sites
will convert the substrate molecules into products. This basically means that if the concentration
of the enzyme is to be increased, there needs to be an excess of substrate, in other words, which
means that the reaction must be independent of the concentration of the substrate (Tietel et al.,
2011). ".
2.4.6.1 Oil extraction: Oils from grape seed, coconut germ, sunflower seed, palm kernel and
olives are traditionally produced by extraction with organic solvents. Hexane, a potential
carcinogen is the most commonly used solvent. Recently, the plant cell-wall-degrading enzyme
preparation has begun to be used in olive oil preparation. During grinding of the olives, the
enzymes are added, thereby releasing the oil easily (Albersberg et al., 2003).
2.4.6.2 Chromaticity and Stability of Red Wines: Pectinolytic enzymes added to macerated
fruits before the addition of wine yeast in the process of producing red wine resulted in improved
visual characteristics (color and turbidity) as compared to the untreated wines. Red wines which
23
are enzymatically treated showed chromatic characteristics better than the control wines. These
wines also showed greater stability as compared to the control (Aschoff et al., 2015).
2.4.6.3 The chemical degumming treatment is toxic, polluting and non-biodegradable: Eco-
friendly and economic alternative to the above problem is the biotechnological degumming using
pectinases in combination with xylanases. Pectinases are involved in the retting and degumming
of jute, flax, hemp, ramie, kenaff (Hibiscus sativa), and coir from coconut husks (Arenas-
Ocampo et al., 2003). Retting is a fermentation process, in which certain bacteria (e.g.,
Clostridium sp., Bacillus sp.) and certain fungi (e.g., Aspergillus sp., Penicillium sp.) decompose
2.4.6.4 Waste water treatment: For treatment of wastewater from citrus processing industries
various processes have been investigated, which include: physical dewatering, spray irrigation,
chemical coagulation, direct activated sludge treatment and chemical hydrolysis followed by
methane fermentation (Penniston et al., 2008). These processes have low efficiency due to
chemical resistance of the pectic substances, high treatment cost, long treatment periods and
activated sludge treatment (Chadha et al., 2005). The waste water from the citrus-processing
industry contains pectinaceous materials that are barely decomposed by microbes during the
processing industries as by-product. These wastewaters are pretreated with Pectinolytic enzymes
which facilitate the removal of pectinaceous material and render it suitable for decomposition by
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2.4.6.5 Coffee and tea fermentation: Pectinase treatment accelerates tea fermentation and also
destroys the foam forming property of instant tea powders by destroying pectin. In coffee
fermentation, it is used to remove mucilaginous coat from coffee beans. Enzymatic treatment
accelerates tea fermentation, wherein the enzyme dose is carefully adjusted to avoid damage to
2.4.6.6 Paper and pulp industry: Pulp and paper mills are beginning to use enzymes to solve
carotovora sp. due to its strong macerating activity, has been used for retting of Mitsumata bast.
cationic demand of pectin solutions and the filtrate from peroxide bleaching (Alonso et al.,
2003).
2.4.6.7 Textile processing and bio-scouring of cotton fibers: Pectinases have been used in
conjunction with amylases, lipases, cellulases and hemicellulases to remove sizing agents from
cotton in a safe and ecofriendly manner, replacing toxic caustic soda used for the purpose earlier.
Bio-scouring is a novel process for removal of non-cellulosic impurities from the fiber with
specific enzymes (El Hadi et al., 2013). Degumming/retting of plant bast fibers Bast fibers are
the soft fibers formed in groups outside the xylem, phloem or pericycle, e.g. Ramie and sun
hemp. The fibers contain gum, which must be removed before its use for textile making.
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CHAPTER THREE
3.1 Materials
3.1.1 Reagents
Ammonium sulphate ((NH4)2SO4): British Drug House Chemicals Limited Poole (England)
Dipotassium hydrogen phosphate (K2HPO4): British Drug House Chemicals limited Poole
(England)
Sodium acetate:
26
Zinc tetraoxosulphate VI heptahydrate (ZnSO4.7H2O): British Drug House Chemicals
Potato destrox agar (PDA): Lab M Limited Topley House, 52 Wash Lane, Bury,Lancashire BL9
Sodium trioxocarbonate IV (Na2CO3): British Drug House Chemicals limited Poole (England)
Sodium sulphite (Na2SO3): British Drug House Chemicals limited Poole (England)
Note: All other chemicals used in this work were of analytical grade unless otherwise stated.
3.1.2 Apparatus
Milling machine: Thomas Willey laboratory Mill Model 4, Anthor H (Thoma Company,
Philadelphia, USA).
27
Microscope: WESO microscope (USA)
Orange pectin was collected from Enzymology Unit, Department of Biochemistry, University of
Pectinase producing fungus was collected on Potato Dextrose Agar (PDA) slopes from
3.2 Methods
Potato Dextrose Agar (PDA) (gelling agent) solid media were prepared, following
manufacturer’s description and the media autoclaved at 121oC for 15min. The sterilized media
were poured aseptically into Petri dishes and allowed to gel. The plates were then incubated 30 oC
The fungal specie was inoculated onto the PDA culture media, using inoculation needle and
under the flame of Bunsen burner. The plates were thereafter incubated at 30 oC till visible
colonies of fungus were observed. Fungus was isolated from the morphological contrasting
colonies and purified by repeated streaking and sub-culturing on separate plates. This process
28
3.2.1.3 Storage of Pure Fungal Isolates
Pure fungal isolate was maintained on Potato Dextrose Agar (PDA) slopes or slants and stored at
Three-day old pure culture was examined. The culture was sent to the Microbiology section of
Brain Phosphorelationship Laboratory Ogui Enugu, for identification. The color, texture, nature
of mycelia or spores and growth patterns were also observed. Photographs of the cultures were
also taken.
The three-day old pure culture was used in preparing microscopic slides. A little bit of the
mycelia was dropped on the slide and a drop of lacto-phenol blue was added to it. A cover slip
was placed over it and examination performed under the light microscope at X400 magnification.
Identification was carried out by relating features and the micrographs to “Atlas of mycology” by
(Barnett and Hunter, 1972). Species identification was by examining both macroscopic and
microscopic features of a three day old pure culture. Colour, texture, nature of mycelia and/or
spores produced, growth pattern in addition to microscopic features such as separation, spore
Submerged fermentation (SmF) technique was used to produce 500ml of the enzyme, using a
modification of the method described by (Nsude et al., 2019). This involved ten 250ml
Erlenmeyer flasks containing 50ml each of sterile cultivation media, made up of 0.1% NH4NO3,
0.1% NH4H2PO4, 0.1% MgS04.7H2O, 0.5% orange pectin and adjusted to pH 5.0 by using 1.0N
29
HCl/1.0N NaOH. The flasks were stopped with aluminium foil and autoclaved at 121 oC, 15psi
for 15min.
Six days old pectin agar cultures were used to inoculate the flasks. In every sterile flask, three
discs of fungal hyphae from edge of actively growing pectin agar cultures were added
respectively using a flamed and cooled cork borer of diameter 10mm and then plugged properly.
The culture was incubated for 8 days at 30oC and then harvested. The filtrates were stored at 4 oC
Pectinase activity was evaluated by assaying for polgalacturonase (Pg) activity of the enzyme.
This was achieved by measuring the release of reducing groups from African star cherry pectin
using a modification of the 3,5 dinitrosalicylic acid (DNS) reagent assay method described by
The reaction mixture containing 0.5ml of 0.5% orange pectin in 0.05M sodium acetate buffer of
pH 5.0 and 0.5ml of enzyme solution were incubated for 30min. 1ml of DNS reagent was added
and the reaction was stopped by boiling the mixture in a boiling water bath for 10mins. The
mixture volume was made up to 4ml with 1ml of Rochelle salt solution and 1ml of distilled
water. The reaction mixture was allowed to cool and then absorbance read at 540nm. One unit of
enzyme activity was defined as the amount of enzyme that catalyzes the release of one
Protein content of the enzyme was determined by the method of (Lowry et al., 1951), using
30
3.2.4.1 Procedure for Protein Determination
For protein standard curve, the reaction mixture contained 0.0-1.0ml of protein stock solution
(2mg/ml BSA) in test tubes arranged in triplicates. The volume was made up to 1ml with
distilled water. But for the test mixture, 0.1ml of sample enzyme was mixed with 0.9ml of
distilled water. In either case, 5ml of solution E was added and allowed to stand at room
temperature for about 10min. 0.5ml of solution C (dilute Folin-Ciocalteau phenol reagent) was
added with rapid mixing. After standing at room temperature for 30min, absorbance was read at
3.2.5.1 Centrifugation
Crude enzyme filtrate was centrifuged at 4000rpm and the supernatant kept under cold condition
Ten (10) ml of the enzyme supernatant were gradually injected into sephadex G-200 column
(1.6 × 59cm) previously equilibrated with sodium acetate buffer (pH 5.0, 0.05M) and eluted with
the same buffer at a flow rate of 1 ml.min -1. The fractions with high activities were collected,
The optimum temperature was determined by incubating the enzyme with pectin solution at 30 -
70oC interval of 5oC for 30min and pH 5.0. The activity was then assayed, using the method
described by (Miller, 1959) as contained in (Wang et al., 1997) with little modifications.
31
3.2.4 Effect of pH Change on Pectinase Activity
The optimum pH for enzyme activity was determined using 0.05M sodium acetate buffer pH 3.5-
5.5 and phosphate buffer pH 6.0-8.0 at intervals of 0.5. 0.5% pectin solution was prepared by
dissolving 0.5g pectin in 100ml of 0.05M of the respective buffers. Also purified enzymes were
dispersed in the various buffers and 0.5ml of the enzyme mixed with 0.5ml pectin solution at the
corresponding pHs for pectinase assays using the method described by (Miller, 1959) as
32
CHAPTER FOUR
4.0 Results
4.1 Microorganism
The fungal isolate was collected on Potato Dextrose Agar (PDA) slopes from Enzymology Unit,
Department of Biochemistry, University of Nigeria Nsukka Enugu, Nigeria. The pure isolate was
33
4.2 Production of Pectinase by Aspergillus niger
Enzyme activity and protein concentration of mass-produced pectinase of Aspergillus niger were
The elution profiles after Sephadex G-200 Gel filtration chromatography is shown in Figure 3.
Absorbance at 540nm
0.8
0.7
0.6
0.5
0.4
0.3
0.2
0.1
0
0 5 10 15 20 25 30 35 40
Fraction number
Figure 3: The elution profiles after Sephadex G-200 Gel filtration chromatography
Aspergillusniger pectinase was purified with a fold of 1.73, a yield of 4.61% and specific activity
34
Table 1: Purification step of Aspergillusniger Pectinase
filtration
(Figure 5) and decreased significantly below and above this value, using orange pectin as
180
160
Activity (µmole/min)
140
120
100
80
60
40
20
0
3 3.5 4 4.5 5 5.5 6 6.5 7 7.5 8 8.5 9
pH
35
4.5 Effect of Temperature on AspergillusnigerPectinase Activity
180
160
140
120
100
80
60
40
20
0
25 30 35 40 45 50 55 60 65 70 75
Temperature (oC)
36
CHAPTER FIVE
fungal isolate, Aspergillus niger was confirmed (Figure 1). The industrial pectin was used
to induce pectinase production in Aspergillus niger which had more pectinase activity under
submerged fermentation. The entire fermentation process was carried out at room temperature
(300C). The accumulation of maximal enzyme activity and protein concentration of mass-
respectively after 4 days of fermentation. Similar observation was also obtained during pectinase
production from mango peels by Aspergillus tamari in solid state fermentation in which
and in 3 days for the production of pectinase from Tamarind kernel powder by submerged
fermentation using Aspergillus spp (Viswanathan and JagadeshBabu, 2008). Banu et al., (2010)
reported maximum polygalacturonase activity on the 5th day of fermentation with Penicillium
was use to purify the extracted Aspergillus niger pectinase (Figure 3). It was purified with a fold
of 1.73, a yield of 4.61% and specific activity of 0.64U/mg of protein (Table 1). The optimum
pH for Aspergillus niger pectinase were 5.5 with optimum activity of 163.74µmole/min (Figure
4) and decreased significantly below and above this value, using industrial pectin as substrate for
enzyme reaction. Optimum temperature of the enzyme was at 45°C as shown in (Figure 5). At
the optimum temperature, the enzyme had optmium activity of 160.14µmole/min. (Favela-Torres
37
et al., 2006) reported that an acidic pH of 4.0-4.5 and temperature range of 40-45oC support high
pectinase activity. The pH optima for 30 fungal pectinases reported by Niture et al., (2004)
ranged from 2.5 to 6.0. According to (Jayani et al., 2005), most microbial pectinases have
optimal pH range of 3.5-5.5 and optimal temperature range of 30-50oC. Hence, the optimal pH
and temperature obtained in this work are in agreement with those in literature. According to
including polygalacturonase, pectin lyase and pectin methylesterase. Pectin lyase breaks down
the glycosidic linkages of pectin at C-4 and simultaneously eliminates H from C-5, producing
unsaturated products and reducing groups called oligogalaturonates (Yadav et al., 2009).
5.1 Conclusion
This investigation suggests that industrial pectin gotten from orange peel could be an attractive
and promising substrate for the production of pectinases by Aspergillus niger. In addition, this
work will act as first line information to researchers who want to explore the possibilities of
converting waste to wealth and value addition. Since orange peels utilized in this process are
readily accessible as waste with little or no cost and also contain an appreciable amount of
pectin, they can be regarded as a low-cost substrate for efficient and economical production of
pectinases using Aspergillus niger. This will not only lead to the reduction in the production cost
of pectinases but also help to decrease the pollution load resulting from these wastes.
38
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