BIODIVERSITAS
‘Voinme 21, Number 5
Pages: 1953-1960
ISSN: 1412-033
ESN: 2085-4722
‘DOK: 10,13057/biediv/d2 10523
May 2020
Fungal isolates from marine sponge Chelonaplysilla sp.:
Diversity, antimicrobial and cytotoxic activities
DIAN HANDAYANT™, MUH. ADE ARTASASTA™, NILDA SAFIRNA!, DIANA FITRI AYU
‘TRINA EKAWATI TALLEP, TRIANA HERTIANT
"suman Biota Laboratory, Faclty of Pharmacy. Universtas Andala. J Utand, Kampus Lima Mais, Padang 25163, West Sumatra Indonesia
Depantnant of Biomedeal Faculty of Medics, Uaiverates Andlas Tl Und Kanipas Lara Manis Padang 25165, Wst Samat, indonesia Tel
“+62-751-31746. tema: dnhandayans@phar wnand acid
Deparment of Biology, Faculty of Mathematis and Natural Scienos, Universes Sem Ratlang. Kempus UNSRAT Klsak, Manado, 95115, Noth
Slaves Indonesia
“Faclty of Pharmacy, Universitas Gadjah Mada J, Kaluran, Sakip Utara, Sloman $5281, Yopyskarta Indonesia
‘Manuscript received: 3 February 2020, Revision aospted: 13 pil 2020.
Abstract. Hondayani D, Artasasta MA, Safira N, Ayuni DF, Tallei TE, Hertiani T. 2020. Fungal isolates from marine sponge
‘Chelonaplysilla sp.: Diversity, antimicrobial and cytotoxic activities. Blodiversitas 21; 1954-1960, The purpose of this veseasch Was to
study the diversity of fngi associated with marine sponges Chelonaplysilla sp. and their bioactivties. Fungal isolation was carried out
by the multilevel dilution method in Saboraud Dewrose agar (SDA). Twelve fungal isolates were successfully purified, then cultivated
Using rice for 4-8 weeks at room temperature and subsequently extracted using ethyl acetate, Antimicrobial activities of the fhngal
extracts were tested against Staphylococcus aureus, Escherichia coli and Candida albicans by using the agae diffusion method, The
extracts of isolates ChOS and Chi? showed a significant antagonistic effect against S. aureus and E.coli with the diameter that ranged
from 15 to 17 mm. Using the brine shrimp lethality test (BSLT), six fungal extcacts revealed cytotoxic activity with LCs <100 gm,
Ikolate Ciht0 was the most potential fungus with the strong cytotoxic aetivity of LCs of 0.90 jig/mL. The 3-(4,5-dimethylthiazol->-y!.
-diphenyltetrazolium bromide (MTT) assay was conducted also for six potential fungal extracts against breast cancer cell (T47D),
‘The isolate Ch0S showed moderate cytotonie activity with ICs of $3.69 ygimL. The molecular identification was castied out for
potential fangi using the ITS marker. The results showed that ChO2 was spergillus oryzae, Ch0S was Phomompsis sp... Ch06 was
Penicilium simplicissimum, Ch10 was & bassiana and Chi2 was Aspergillus mellimus. This stay concluded that fungal isolates from
‘Chelonaplvsila sp. can be explored further for new sources of aatimicrobial and aatieancer compounds
Keywords: Antimicrobial Chelonaplyslla, cytotoxic, marine-derived fungi
INTRODUCTION
Bioactive compounds produced by fungi associated
‘with marine sponges have shown potential pharmacological
activities and have similar metabolites produced by their
hosts (Indraningrat etal. 2016; Youssef etal. 2019). These
types of fungi are thought to be the original producer of
bioactive compounds in sponges (Proksch et al, 2002),
Several new bicactive compounds from marine associated
fungi have shown potential new bioactivities, for example,
secondary metabolites produced by Asperaillus
similanensis contained similanpytone C, similanamide, aud
yripyropene (Thomas et al. 2010; Prompanya et al. 2015),
Averantin isolated fiom A. versicolor associated with
‘marine sponge Neopetrosia sp. was proven to have
antibacterial and cytotexic activities (Lee etal. 2010).
‘Marine sponges which were collected from Mandeh
island in west Sumatra-Indonesia were known to be
associated with potential fungi which produced
antimicrobial and cytotoxic activities (Artasasta etal, 2017
Handayeni and Aminah 2017; Handayani and Artasasta
2017; Amina etal, 2019; Handayani etal. 2019a, 20190)
This study focused to discover the diversity of
Chelonaplsitia sp. associated fungi and their biological
activities against pathogens and breast cancer cells (T47D),
MATERIALS AND METHODS
‘The extraction process of the pure fungal isolate from
marine sponge Chelonapiysilia sp.
‘Marine sponge Chelonapivsilla sp. (Fig. 1) from
‘Mandeh island, west Sumatra-Indonesia (1o 6’-10 13°S,
1000 19°-1000 25°E) (Fig. 2) was used as a fungal source.
Identification of the sponge was conducted by Dr. Nicole J
De Vooad, at the Natural Biodiversity Center, Netherland
‘The fungal isolation was conducted following our previous
study using a multi dilution method (Handayani and
Artasasta 2017). Pure isolates were cultivated om rice
‘media at room temperature for 4-6 weeks. The extraction
Process was conducted after the fungal isolates overgrew
on the media, Ethyl acetate was used for extracting
‘nonpolar and semi-polar compounds of the fungal isolates
with the ratio of 200 mL solvent to 100 mg rice. To
complete the extraction process, the fungi were immersed
in the ethyl acetate for 3 days. The solvent was evaporated
to obtain the dry extracts that were used for antimicrobial
and cytotoxic activity as well as phytochemical tests.HANDAYANT etal. ~ Fingal isolates from marine sponge Chelonaplysilla sp.
1955
=
Figure 2. Location of sample taking of marine sponge Chelonapiysila sp. in Mande Island, West Sumatra Indonesia (1° 6-1 13°S,
100° 19°-100° 25°)
Figure 1. Marine spoage Chelonaplysillasp. Bar = em
Screening of antimicrobial activity
S. aureus ATCC 2592, E, coli ATCC 25922, and C.
albicans were used as the pathogens for antimicrobial
screening. This study followed the procedure provided by
Balouiri ct al (2016) using the agar diffusion method.
Sterile paper disk (6 mm) was soaked in each of $ % fungal
extract, Nutrient agar (NA) was used for an antibacterial
test, while SDA was used as media for an antifungal test
AS positive controls, 30 yg/dise chloramphenicol
(antibacterial) and nystatin (antifungal) were used. After
incubation for 24 h at room temperature, the diameter of
inhibition zones (mm) was measured as an indication of
antagonistic effect,
Screening of cytotoxic activity
BLT
BSLT was used for the evaluation of cytotoxic activity.
“The eggs of Artemia salina were hatched in seawater for 2
days at 37°C. After hatching, 10 active naplit were put
into a test tube containing the fungal extracts which were
dissolved in DMSO (dimethyi sulfoxide) up to a
concentration of 1000, 100 and 10 yom. Probit analysis
‘was used for determining the value of LCSO (Meyer et al
1982).
Chrotoricity assay
MIT assay was carried out to study the cytotoxic
activity of fungal extracts against breast cancer cell T47D.
‘These cells were seeded at | = 10° cells/mL in 96 well
iicrotiter plates containing DMEM (Dulbecco's modified
Eagle's medium), a modification of Basal Medium Eagle1956
(BME), The cells could attach on the well overnight, Once
the cells were confluent, 20 yL of the fangal extract was
added to the well with various concentrations (1000, 500,
125, 62.5, and 31.25 ygimL) then the plates were
placed in 5% CO2 incubator at 370C for 24 h. Thereafter,
the media were replaced with PBS. The cells were
subsequently treated with $ mg/mL 3-[4,5-dimethylthiazol-
2-ylJ-2,5-diphenyltratrazolium bromide (MTT) (Sigma
Chemical Co., St. Louis, MO) and incubated for 4 hours.
DMSO was used to dissolve the remaining formazan
crystals. Using ELISA reader, the absorbance was
measured at $70 nm. The percentage of viability of the
cells was determined then converted into the ICS0 value
(Arasasta etal. 2017).
Fungal identification
Macroscopic and microscopic identification
Macroscopic appearance of the fungi such as color. the
diameter of the colony, and colony reverse was observed
Microscopic observation was conducted by using a
Jactophenol cotton blue solution as a mounting medium and
staining agent. The hyphae were put on a slide then mixed
with fungal coloring. Conidiophores, vesicles, and conidia
were observed under @ light microscope (Charya and Garg
2019)
Molecular identification
Molecular identification was performed using ITS1
primer (FS'-ICC GTA GGT GAA CCT GCG G-3") aud
ITS4 primer (RS’-TCC TCC GCT TAT TGA TAT GC-3")
with the two-step procedure, DNA extraction, and PCR
amplification. DNA extraction was conducted by following
Saitoh et al., (2016), The PCR process was conducted by
34 cycles included denaturation at 9$0C for 5 min,
annealing at $50C for 1 min, and extension at 72°C for 1
min (Ferrer ct al. 2001). The PCR products were sequenced
in First Base Malaysia then were tinmed and assembled
by using BioEdit V.7.0.5. Furthermore, the sequences were
subjected to identification using the BLAST program on
NCBI The Neighbor-Foining (NJ) phylogenetic tree was
generated by MEGA 7.0 sofiware (Kumar et al. 2016),
using Kimura-2-Parameter with 1,000 bootstrap
replications
Secondary metabolites examination
The standard protocol of Harborne (1984) was followed
in this step. Dragendorft reagent for alkaloid, Lieberman
Bourchard’s reagent for terpenoid and steroid, FeCl
reagent for phenolic, and Citroborat reagent for flavonoid
were used. The fungal extract was spotted on the G60 F254
silica plate then eluted with n-hexane: ethyl acetate eluent
(i: 4), Each of the reagents was swapped to each different
silica. Each of the secondary metabolites produced
different colors based on different reagents. The orange
color indicated the presence of alkaloid, pink color for
terpenoid, blue or green color for the steroid, purple, red, oF
pink colors for phenolic, and green color for flavonoid
(Harborne 1984).
BIODIVERSITAS 21 (5): 1954-1960, May 2020
RESULTS AND DISCUSSION
Antimicrobial activity of marine sponge derived fungi
Twelve fungal isolates were purified from marine
sponge Chelonapirsilla sp. This sponge was known to
‘exhibit antimicrobial and eytoroxic compounds (Bobain
‘and Faulkuer 19912, 19916). Presumably, the bioactive
compounds were produced by its associated fangi
‘Although the active compound produced by the fangus
associated with Chelonaphysitia sp. has never been reported
before, some studies stated the family of this genus was
associated with the fungus Streptomyces sp. which has
broad-spectrum antimicrobial activity (Selvin ct al. 2004:
Selvin 2009; Selvin et al. 2009). Antimicrobial activity
from twelve fungal extracts showed different results (Table
1), Among all isolates, only three isolates (ChOS, Ch06,
and Ch12) performed strong antagonistic activity against
both S: aureus and E, coli. These fungal extracts could be
categorized as broad-spectrum because of their abilities to
inhibit the growth of both Gram-negative and Gram-
positive pathogenic bacteria, Isolate Ch12 was the most
potential isolate with a diameter inhibition zone of 16.69 =
0.51 and 7.96 = 0.73 mm, respectively. However there was
zno fungal extract that showed a strong antagonistic effect
against C. albicans.
‘Table 1. Antimicrobial activity result of fungal extracts from
‘marine sponge Chelonapiysttasp.
‘Diameter inhibition zone (mm) = Standard
Fungat
Deviation (SD)
{solates colle 5 aureus E.coli G albicans
Chor
hod 8831.01
hos 8250.35
chor = 8134076
hos 15925052 16332051
hos 11962079 12292072
cho? - :
chos 8.754087
ccho9 - . 867=036
. ress076 76:
: 172102 8.
1692051 16882057 7
‘Note: The value is expressed as the mean = standard deviation;
3
‘Table 2. MTT assay of the extracts of fing isolated from marine
sponge Chelanoplsitia sp. against breast cancer cell T47D
‘Fungal iolates code 1Ceo(ugmk)
chor 2
choz 743.42
cnos 83.96
choo
cho 70.75
cud 637.24HANDAYANT etal. ~ Fingal isolates from marine sponge Chelonaplysilla sp.
* swf oe ee oe
Frngal isolates code
Figure 3, Cytotoxic activity results of the extracts of fungi
isolated fom masine sponge Chelanoplysila sp. by using BSLT
method
(Cytotoxte activity of marine sponge derived fumgt
BSLT is one of the preliminary toxicity tests for the
active compound obtained from the fungal extract. This
method is comparable to expensive bioassay methods
(Pisutthanan er ai,, 2004; Wu, 2014), In this studs
Fungal isolates (ChO1, Ch02, Cho5, ChO9, Ch10, and C12)
hhad LCs value <100 g/ml. (Fig. 3). These isolates could
bbe categorized as having strong cytotoxic activities
according to Meyer ef al, (1982), Among these isolates,
isolate Ch10 had the lowest LCso value (0,90 ng/mL). MTT
assay was also conducted for these six potential fingi
against breast cancer cell T47D (Table 2). The isolate ChOS
fungal exhibited moderate cytotoxic activity with ICs0
$3.69 ugimL. Other isolates did not provide enough
cytotoxic activity on these cell lines. Presumably, every
cancer cell has its sensitivity against each anticancer agent
Macroscopic, microscopic, and molecular identification
of marine sponge derived fungi
Antimicrobial and cytotoxic assays revealed that
isolates Ch02, C05, Ch06, Chi0, and Ch12 strains were
the most potential to be studied further. Fungal
identification of these isolates was conducted
macroscopically, microscopically (Fig. 4), and molecularly
(Fig. and Tab. 3), From the phylogenetic tre, it was seen
the grouping of cach isolate following the results of
identification.
The surface observation of isolate ChO2 exhibited a
white cotton colony and showed a white color in the
reverse colony. The diameter of the colony after 5 days was
7 cm (AL). Conidiophore and asexual spore ofthis isolate
were similar to these of genus Aspergillus. The surface of
the colony of isolate Ch0S was observed to have white
threads appearance. The colony diameter after $ days was
10 cm (BL). This isolate had light blue conidiophore, and
asexual spores of this fungus were similar to genus
Phomompsis (B2). Isolate ChO6 had a dark green surface
colony. Its reverse colony was gray color with diameter
after § day-growth was $6 em (Cl). This isolate had gray
conidiophore and asexual spores which were similar to
szenus Peniciliu. Isolate Chi2 had a white colony with a
rough surface after 5 days, the diameter of the colony was
1957
around 3-5 cm (El), This fungus had blue light
conidiophore and striated vesicle. These characters place
this fungus similar to gems Aspergiilus (E2). Isolate Ch10
hhad a white surface colony with a diameter of §-10 em after
10 days. This fangus had gray conidiophore (D1). Asexual
spores of this fungal were similar to genus Becuneria (D2)
The results of molecular identification for isolate
‘ChO2, Ch0S, Ch06, C10, and Ch? are presented in Table
3 and Figure 4. The conclusions drawn based on the results
of identification using the ITS gene indicated that ChO2
had a 100% identity with Aspergillus oryzae and
Aspergillus, flavus. The 100% identity between these (0
‘fungal species resulted in uncertainty regarding the
identification method. According to Frisvad et al (2019). 4
‘oryzae was the result of domestication of 4. flavus, thus
‘giving confusion to the naming of those unfamiliar with the
morphological characteristics of these two fungi. To
sistinguish the two, a suggestion will be placed suck as the
‘examination of aflatoxins, since A. oryzae lost its ability to
produce aflatoxin, although phylogenetically it is very
Closely related to A. flavus. Aspergillus oryzae produced 4-
hydroxy-4-methylpent-2-enyl moiety which was assumed
to inhibit the growth of E coli while 4. flavus produced a
compound that showed a strong inhibition activity against
S aureus (Xu etal. 2015).
Three portals used to identify fungi molecularly gave
different results based on the ITS gene sequence of isolate
‘Ch05. The GenBank identified this isolate as Phomapsis
sp. (99.8%), Mycobank revealed identity 97.51% with P.
perseae, while BOLD identified this isolate as Diaporthe
hhongkangensis (99.2%). Phomopsis actually is the asextal
stage of Diaporthe (Gomes et al. 2013). Kobayashi et al
(2003), was able to isolate phomopsidin produced by
Phomopsis sp., @ mavine-derived fungus, Using GenBank
and BOLD, Ch06 was confirmed molecularly as,
Penicilium simplicissimnmm. Zn et al (2016), reported the
presence of three new dihydroisocoumarins prostuced by P.
simplictssionom MA-332, a fungus derived from marine
‘mangrove, which showed toxicity activity against brine
shrimp and broad-spectrum antimicrobial activities.
Isolate Ch10 was identified by GenBank as Becnrveria
dassiana, and this result was in line with the results
obtained from MycoBank and BOLD. Yamazaki et al
(2012) reported that they were able to isolate chrysazin and
globosuxanthone A from 8 bassiana TPU942, a marine
dcrived fungus. Chrysazin and globosuxanthone A were
able to inhibit the growth of C. albicans, and
¢globosuxanthone A showed cytotoxic activity against two
‘human cancer cell lines, HCT-15 (colon) and Jurkat (T-cell
Iymphoma), Isolate Chi2 was verified molecularly as
Aspergillus mellinus. Aspergillus meltimus RSPG_204
showed antimicrobial activities against S aureus, P.
aeruginosa and C. albicans, and high cytotoxic activity
against MCF7 (breast) cell line (El-Hady et al, 2014). The
results from secondary metabolites analysis showed that
‘Chi2 contained terpenoid, while Ch 10 contained saponin.
Terpenoid compounds have been widely isolated from
Aspergillus gests. Most of the terpenoid compounds also
hhave antimicrobial and cytotoxic activities. Aspergilloxide
fa terpenoid compound from the marine-derived fungus1958
Aspergillus sp. bas potent cytotoxic activity toward HCT
116 colon carcinoma (Cueto et al. 2002). Another terpenoid.
compound from Aspergillus sp. asterpenols A and B, was
known also as a potent antimicrobial (Xiao et al. 2013)
Less information provided on saponin compounds from B.
bassiana, Nevertheless, B. bassiana bas been explored by
several researchers. Beauvericin, a major compound from
B. bassiana, is a potent cytotoxic. This compound also has
another bioactivity such as antimicrobial, antiviral and
insecticidal (Wang and Xu 2012). Pyridovericin and
pyridomacrolidin, other compounds ftom B. basstana, have
been reported to have antimicrobial and cytotoxic activities,
(Takahashi et al. 1998),
ED
BIODIVERSITAS 21 (5): 1954-1960, May 2020
In summary, fungal isolate Ch12 and Ch10, from
marine sponge Chelanoplysilla sp... showed potential
‘antimicrobial and cytotoxic activities, respectively.
Molecular identification revealed that Ch 12 was 4.
‘ellirus and Ch 10 was B, Bassiana, Isolate Chi0 and Ch
12 have already submitted to NCBI with accession number
‘of MT000965 and MT003976, respectively. Further study
is important to conduct due to the presence of secondary
‘metabolites which can be investigated further for the
possibility of being developed as antimicrobial and
anticancer agents.
Figure 4, Macroscopic and microscopic identification of nga isolates Ch02, ChOS, Ch06, Ch10, and Chi?
ble 3. The results of Molecular identification of fungal isolates Ch02, Ch05, Ch06, Ch1O, and Ch12
Fungal
toate GenBank Identity (0) MyeoBank Identity (6) BOLD Ldentity (0)
Cho? dspergillus onzae 100% flaws 100% 4 one A flaris TOP
hos Phomapsis sp. 99.30 Piperseae 97.51 Diaporthe hongkongensis 99.2
Choe. simplicissimum 100 Profi 97.461 Psiplicissimam 100
ChlO—-Reauveria basstana 100 B bassiana 99.184 B barsiona 100
Chi. meltinus 100 A.meltisus 100 Aspergillus meltinus 100HANDAYANT etal. ~ Fingal isolates from marine sponge Chelonaplysilla sp. 1959
KaN1045571 Pencil spear
cmos
44684901 Peictum simpletsimum
seo) ne 119812.1Peictiom wth
HIN1045781 Peneitum spleen
/AF203084 1 Pencilum senlcissimum
uvs25703.1 Asperilis rye
unsast27 1 Aspergihis yzae
G87e097 1 Acpergtus ryzae
Oi] MHOASS02 4 Ampergiis eyzae
0346200.1 Aspens oryzae
11K229158.1 Phomopsis eucommi
i017795.1Aspergus metus
965118.1Aspergaus mets
i685256.1 Aspergius metinus
Tecate Aspergiss moins
len 12
MF 800868 1 Phomapsis sp.
KFSE9097 4 Phomampsis 3p.
JF726516.1 Phomopss sp.
3171941 Phamopsis sp.
on 05
1uns247061 Beawverta bassin
KU523254 1 Beawerabessann
onto
7] 006825661 Seauvena basstane
uxz23322 1 Beawvera beste
KCA10951 Beasseriatassione
as
Figure §, The phylogenetic wee of ITS sequences of fhngal isolate ChO2, ChOS, Ch06, ChiO, and Chi
Joining method
ACKNOWLEDGEMENTS:
This research was supported by BOPTN of Andalas
University, Padang, Indonesia, in the project of
“Penenelitian Dasar Unggulan Klaster Riset-Publikasi
Guru Besar Universitas Andalas (PDU-KRP1GB-Unand)",
No, T/32/UN 1617/PP.OK-KRPIGBLPPM 2019 We ate
also_gratefil to Dr. Nicole J. De Voogd, Natural
Biodiversity Center, the Netherlands for the identification
of the marine sponge.
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