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METHODICAL POINTING
from the course
“Biological and bioorganic chemistry”
(part 2. Fatty acids and lipids)
Readers:
Kyiv-2018
2
CONTENT
The lipids are biological substances with various structures that are
insoluble in water and soluble in non-polar organic solvents such as
chloroform, benzene and ether. They are hydrophobic in nature because of the
high amount of hydrocarbons in their structure.
Lipids functions are next:
• structural components of cell membranes;
• regulation of cell membranes permeability;
• participation in the creation of intercellular contacts;
• participation in the nerve impulse transmittion;
• energy storage;
• since fat is а bad conductor of heat, it provides excellent insulation.
• protection of the internal organs.
• precursors of a number of biologically active substances.
They:
• are derived from saponifiable lipids
• usually have non-branching chain and even number of carbon
atoms
• the length of the aliphatic chain is usually from between 10 and 20
carbons
• saturated (alkanes) and unsaturated (alkenes)
• in most unsaturated fatty acids, the cis isomer predominates; the
trans isomer is rare.
Fatty acids are either called by their systematic names according to the
IUPAC (International Union of Pure and Applied Chemistry) nomenclature or by
their trivial (common) names. Actually trivial names are used much more
frequently than systematic names. Trivial names are non-systematic historical
names that seldom convey structural information and often reflecting
a common or early source of the acid. They are the most frequent naming
system used in literature. For example (red – systematic names and blue –
trivial (common) names):
• hexadecanoic acid (palmitic acid),
• octadecenoic acid (oleic acid),
• octadecatrienoic acid (linolenic acid)
The position of the carbon atoms in a fatty acid can be indicated (Fig. 2.3):
- from the –COOH (or carboxy) end,
- from the –CH3 (or methyl) end.
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C-2
C-3
C-1
Fig. 2.3. The principle of numbering of the carbon atoms in fatty acids
In systematic and common names the first way is used. When the fatty
acid is indicated from the -COOH end, then the C-1, C-2, C-3, ….(etc.) notation
is used. In addition in common names Greek letters or symbols (α, β, ɣ, δ, ε,
etc.) are used to number Carbon atoms in fatty acid molecules (Fig. 2.3, Tab.
2.1).
….. ……
Last or Terminal Carbon atom in ω-Carbon or the n-carbon
a fatty acid molecule atom,
Fig. 2.4. The principle of writing the name of a fatty acid via shorthand
nomenclature
For unsaturated fatty acids the shorthand nomenclature can also contain
the positioning of the double bonds – it can be pointed:
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• either from COOH-end of fatty acid molecule (∆x (or delta-
x) nomenclature)
• or from CH3-end (ω−x, omega-x or n−x nomenclature)
(Fig. 2.3)
The first pathway - ∆x-nomenclature (the “∆” is the Greek letter “delta”,
which translates into “D” (for Double bond) in the Roman alphabet): the
location of the double bond is counting from the -COOH end (Carboxyl
Carbon is also taken into account!!!) and is denoted by the symbol ∆ with
the number (Fig. 2.5).
Examples (green - ∆x-nomenclature; red – systematic name; blue –
trivial name):
Fig. 2.5. The principle of fatty acid naming via ω−x- and ∆x-shorthand nomenclature
• 18:3ω3 – linolenic acid - this means that the first double bond is
contained between 3 and 4 carbon atoms, if we count from the –CH3
group (this group is also taken into account)
In Omega numbering system the position of the second double bond is not
indicated; it is because of double bonds in polyunsaturated fatty acids ARE
NOT in the Conjugated form such as:
– CH = CH – CH = CH –
Incorrect
They are separated by two single bonds, not by just one single bond:
– CH = CH – CH2 – CH = CH – CH2 – CH = CH –
Correct
Thus, in linoleic acid (C18:2ω6) the second double bond will be between
C9 and C10 from the ω-carbon.
According to ω−x–nomenclature, unsaturated fatty acids are divided into
groups, the most important of which are next:
• ω9 series – there are fatty acids in which the first double bond is
between C9 and C10 counting from the ω-carbon (for ex., Oleic
acid)
• ω6 series - these fatty acids have the first double bond between C6
and C7 counting from the ω-carbon (for ex., linoleic acid and
arachidonic acid)
• ω3 series - fatty acids in which the first double bond is between C3
and C4 counting from the ω-carbon (example - linolenic acid)
The unsaturated fatty acids that cannot be biosynthesized in tissues of
some animals including humans (because of luck the saturases – enzymes
needed for some double bonds formation) are called essential fatty acids. So
thus they must be obtained in the diet. The most of the essential fatty acids are
members of the ω6 and ω3 series – for example, linoleic and linolenic acids.
Some animals including humans can synthesize arachidonic acid from linoleic
acid obtained in the diet.
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This is due to hydrocarbon chains of saturated fatty acids can lie parallel
with strong dispersion forces between their chains (Fig. 2.7); they pack into
well-ordered, compact crystalline forms and melt above room temperature. In
contrast, because of the cis configuration of the double bonds in unsaturated
fatty acids, their hydrocarbon chains have a less ordered structure and
dispersion forces between them are weaker; these triglycerides have melting
points below room temperature
Fig. 2.7. The peculiarities of saturated and unsaturated fatty acids hydrocarbon chains
structure
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Salts of fatty acids are called soaps and form micelles in aqueous (water is
solvent) solutions. These spherical structures allow the charged head-groups to
be in contact with water while at the same time removing the non-polar tails
from contact with water. More details about these formations will be given later.
The fatty acids can react with the hydroxyl groups to form esters. For
triglycerides, all three hydroxyls of the glycerol have a fatty acid residue
attached to it (Fig. 2.9).
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O
CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2C O CH2
O
CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2C O CH
O
CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2C O CH2
fatty acid glycerol
residues residue
Neutral fats are neutral because they are uncharged and do not contain
acidic or basic groups. They are nonpolar and hydrophobic.
Total
(complete)
hydrogenation
Liquid Solid
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Partial
(incomplete)
hydrogenation
Liquid Solid
saturated fat O
C
O CH2
Fat (Triacylglyceride)
Fig. 2.13. The trans fat structure and example of trans fat courses
Trans fat tends to raise cholesterol levels in the blood, although not as
much as saturated fat.
2.7. Waxes
Waxes are esters of long chain fatty acids and long chain alcohol (Fig.
2.18).
Waxes are very hydrophobic and are used by plants and animals for
protective, water-proof coatings. Some examples of waxes are given on Fig. 2.19
and on Tab. 2.2.
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2.8. Steroids
Steroids are a type of lipid that is not derived from a fatty acid. The
structure of steroids is based on the tetracyclic (four-ring) system –
cyclopentanoperhydrophenanthrene (steroid) nucleus:
•
Cyclopentanoperhydrophenanthrene
(steroid) nucleus
H3 C
H3 C
H
H H
HO
OH COOH
H H
HO OH
H
Cholic acid
CH 2 OH
OH
C=O
O CH
H3 C H
H H
O
Aldosterone
Digitoxin
From digitalis purpurea
They are used as treatments for congestive heart failure and cardiac
arrhythmias; however, their relative toxicity prevents them from being widely
used.
They are the major constituents of cell membranes but are found also in
circulating fluids. They can be classified into two main groups (Fig. 2.25):
• Lipids with a phosphate residue called phospholipids
• Lipids containing a carbohydrate residue (one or more) called
glycolipids
Both groups of lipids can be divided into two subgroups dependent on
alcohol that is contained in their structures – glycerol (such lipids are called
glycerophospholipids or glyceroglycolipids, respectively) or sphingosine
(sphingophospholipids or sphingoglycolipids).
There are also lipoproteins – structures that includes different types of
lipids plus protein part called apoproteins.
2.10. Phospholipids
These lipids contain phosphoric acid residue and are divided into:
- glycerophospholipids (or phosphoglycerides; contain alcohol
glycerol):
Structure of sphingophospholipid
2.10.1. Glycerophospholipids
Glycerophospholipids may be regarded as derivatives of phosphatidic
acid (glycerol esterified with two molecules of fatty acid and one of phosphoric
acid) (Fig. 2.26).
R2
R1
A phosphatidic acid
R1
R2
X=
X=
X=
X=
X
X=
Fig. 2.31. Phospholipid bilayer as a main part of biological membranes (a) and fluid-
mosaic model of biological membrane (b)
2.10.2. Sphingophospholipids
Choline
These compounds are found in the brain and nervous tissue with high
concentration in myelin sheath.
Sulfatides are cerebrosides that contain sulfated galactosyl residues
(Fig. 2.38).
Fatty acid
Sphingosine
Fatty acid
Brain gangliosides may contain up to four sialic acid residues and based
on that they are GM, GD, GT and GQ, containing 1,2,3 or 4 sialic acid residues.
2.12. Lipoproteins
Comparative sizes,
lipid composition
and types of
apoproteins of
different classes of
lipoproteins
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Fig. 2.41. Comparative sizes, types of apoproteins and lipid composition of the main
lipoproteins classes
2.13. Eicosanoids
2.14. Isoprenoids
Vitamin A occurs only in the animal world. It is found in the plant world
in the form of a provitamin in a group of pigments called carotenes:
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2.15. Test questions