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18311/jmmf/2023/33750
Abstract
Pectinases are a group of enzymes hydrolyzing pectin substances. Pectin esterases (catalyze the removal of methoxyl residues
of pectin), depolymerizing pectinases and protopectinases (converts insoluble protopectin into soluble pectin) are the three
major types of pectinases, which are of commercial importance. Pectinases are abundant in nature and are synthesized by
a variety of microorganisms, notably from bacteria, fungus to yeast. Production of pectinases by various microorganisms is
through solid state and submerged fermentation procedures. Optimization of essential bioreactor considerations and
parameters such as temperature, pH and fermentation times play a vital role in pectinase production. The need for
commercial production of microbial pectinase has expanded globally due to its applications in various sectors. Pectinases
are being used extensively in the food, agricultural, environmental and pharmaceutical sectors. Hence, it needs to be
explored further so as to ensure its maximum usage in various industries. This review discusses the structure of pectin and
pectinase, substrate specificity, mode of action, microbial production strategies and its industrial applications. It also
discusses the current limitations and future prospective.
Keywords: Pectinases, Pectin esterases, Protopectinases, Solid-state fermentation, Submerged fermentation, Industrial
applications
408 | Vol 71(3) | March 2023 | http://www.informaticsjournals.com/index.php/jmmf Journal of Mines, Metals and Fuels
Microbial Production Strategies for the Production of Industrially Important Pectinases: Bioreactor Consideration and its Applications in Various Sectors
Figure 1: Mode of action and byproducts (a) PG (polygalacturonase) and PMG (polymethylgalacuronases) (b) PE (pectin esterase),
PGL (polygalacturonate lyase) (c) PGL (Polygalacturonate lyase) and PL (Pectin lyase)
1.2 Mode of Action the cell walls of immature plants. Hemicelluloses and pectic
materials serve as the cellulose network’s reinforcement, while
Based on mode of action, the pectinase enzyme can be the cellulose microfibrils give the cell wall its strength. The
roughly divided into three groups (Fig.1): pectin esterase, integrity and rigidity of plant tissue are influenced by pectins
hydrolases, and lyases. The methoxyl group of pectin is de- or pectic compounds, which are involved in intricate
esterified by pectin esterase, resulting in the formation of physiological processes like cell development and
pectic acid. Hydrolases (Polygalacturonases and Polymethyl- differentiation44. The primary walls of most plant tissues are
galacturonases) catalyse the hydrolytic cleavage of a-1,4- composed of pectin.
glycosidic linkage in pectic acid and pectin, respectively, while Pectins are a class of galacturonic acid-rich plant cell wall
lyases (Polygalacturonate Lyase and Polymethyl- polysaccharides that are covalently bonded2. About 70% of
galacturonate Lyase) catalyse the cleavage of a-1, 4-glycosidic pectin is made up of galacturonic acid, and all of the pectic
linkage by trans-elimination and forming unsaturated polysaccharides have it connected at the O-1 and O-4
galacturonates and methyl galacturonates respectively. positions40.
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V Vaishnavi, G Divyashri, Thomson Tanya, S Sejal and T P Krishnamurthy
substrate. In the substrate specificity experiment, from the use of this pectinase.
polygalacturonase acid was utilised as a substrate, and55 According to a 1942 research by Elyrod, pectin may be
reported the production of 8.34 U/mL of pectinase (100% broken down by the bacterium Erwinia sp. with the help of
relative activity). Additionally, digalacturonic acid was utilised pectinases. Phytopathogens such as the soft-rotting Erwinia
as a substrate in another study to examine the enzyme species, E. carotovora and E. chrysanthemi, produce a group
specificity of Streptomyces lydicus pectinase, reaching 56% of pectinolytic enzymes. Bacillus, Pseudomonas, and
of the maximum enzyme concentration24. Micrococcus have shown to have the ability to produce
pectinases, according to Chessen et al., 1980. Pseudomonas
and Streptomyces species have been identified as other
2.0 Microbial Production Strategies bacterial genera with pectinolytic characteristics8.
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Microbial Production Strategies for the Production of Industrially Important Pectinases: Bioreactor Consideration and its Applications in Various Sectors
2.1.3 Pectinase producing yeast pectinase through submerged fermentation. Aspergillus niger
can also be used for pectinase production through SmF.
The production of pectinolytic enzymes by yeasts is not
On the fundamental differences between the generation
preferred as it is seen only in a few species of yeast9. Luh
of pectinase by submerged fermentation (SmF) and solid-
and Phaff initially documented the endo-PG synthesis by
state fermentation, comparative investigations have been
yeasts in 1951 with Saccharomyces fragilis. They discovered
done (SSF). These studies have compared productivity and
that some yeast species – Saccharomyces fragilis,
enzyme yields of both the techniques and concluded that
Saccharomyces fragilis var. no. 351, Torulopsis kefyr, Candida
solid state fermentation was more productive than submerged
pseudotropicalis and Candida pseudotropicalis var. lactosa,
fermentation. This might be due to the fact that SSF is simple,
– represent all yeast genera and were capable of significantly
and produces concentrated products with high productivity1.
altering pectin34. The potential of other yeast species to
produce pectinase is also described in recent papers. These
yeast species include Saccharomyces sp., Cryptococcus sp., 2.3 Bioreactor Considerations
Rhodotorula dairenensis, Aureobasidium pullulans, From an experiment done by16 on the production of
Wickerhanomyces anomalus, Geotrichum klebahnii, pectinase in a packed bed reactor, it was observed that the
Kluyveromyces marxianus, etc8. maximum pectinase yield was seen with specific parameters.
Alternating between 24 and 32 celsius using saturated inlet
2.2 Fermentation Routes (Solid State and air proved optimum. The best result was obtained with bed
Submerged) height of 40 cm containing 27kg of wheat bran and 3kg of
The production of microbial pectinase involves the sugarcane bagasse substrate. Another study by15 included
following steps - isolation, selection and screening of the statistical approaches to seek novel and optimum
microbial strain capable of producing pectinases, growth of compositions of medium components that affect the
microorganism on a suitable culture medium, fermentation production of pectinase. included statistical approaches to
and purification methods. The production of pectinase can seek novel and optimum compositions of medium
be done either using Solid State fermentation or by components that affect the production of pectinase. The
Submerged fermentation. SmF involves the growth of study results showed that pectin, (NH4)2SO4 and K2HPO4
microbes of interest in a liquid medium. Submerged affected pectinase production the most. The yield was
fermentation (SmF) is the process by which microbes grow increased 2.8 folds in optimized medium when compared to
and decompose substrates in the presence of a large amount un-optimized medium. Box-Behnken design was performed to
of free water (liquid medium), continuous agitation and optimize the concentrations of these components. The
generates a large number of effluents41. The method of choice maximum pectinase activity was obtained utilising the middle
for industrial activities is SmF6. In solid state fermentation levels of all three tested components. A new strain,
(SSF), due to absence of free water, microorganisms ferment Aspergillus niger NRC1ami, which was isolated from citrus
the solid substrate33. SSF is often performed in an aerobic fruit was cultivated on the statistically optimized media.
environment. Aseptic conditions are not a prerequisite. A.niger requires a continuous supply of oxygen and
controlled pH for the maximum growth and production of
2.2.1 Solid State fermentation metabolites. It was also noted that scaling up of the cultivator
SSF has been used to produce several enzymes such as from shake flasks to bioreactos resulted in an increase in the
xylanses and pectinases by A. awamori using grape pomace yield of pecinase and also other enzymes such as amylase
as the substrate. Production of polygalacturonase and pectin and invertase. This coupled with pH controlled conditions
lyase was also done by Penicillium viridicatum using other increased the production of enzyme about 4-folds. The
fruit-based substrates57, and production of very high levels growing cells have a considerably more stable growing
of alkaline and thermophilic pectinase by Bacillus sp. DT729 environment thanks to pH regulation, which is evident in the
are also relevant examples of the production of pectinolytic enhanced cell development and productivity. The relationship
are also relevant examples. between enzyme denaturation and the instability of
conformational configurations and the influence of pH change
2.2.2 Submerged fermentation on enzyme activity has been shown.The study results
Pectinase can be produced through submerged showed that pectin, (NH 4)2SO 4 and K 2HPO 4 affected
fermentation routes too. Production of xylano-pectinolytic pectinase production the most. The yield was increased 2.8
enzymes from Bacillus pumilus was achieved through this folds in optimized medium when compared to un-optimized
method30. Bacillus licheniformis grown on a medium containing medium. Box-Behnken design was performed to optimize the
NaNO3, KH2PO4, KCl, MgSO4, Tryptone and Orange peel7 and concentrations of these components. The maximum pectinase
and Aspergillus niger can also be used for the production of activity was obtained utilising the middle levels of all three
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V Vaishnavi, G Divyashri, Thomson Tanya, S Sejal and T P Krishnamurthy
tested components. A new strain, Aspergillus niger NRC1ami, inoculum. Clarification of the substrate is necessary before
which was isolated from citrus fruit was cultivated on the fermentation can begin; this improves the sensory
statistically optimized media. A.niger requires a continuous characteristics of white wine. Study by Bosso (1993) reported
supply of oxygen and controlled pH for the maximum growth that the concentrations of 2-phenyl ethanol and iso-amyl
and production of metabolites. It was also noted that scaling alcohol increased while those of n-propanol decreased in
up of the cultivator from shake flasks to bioreactos resulted fermented grape that had been pre-treated with pectic
in an increase in the yield of pecinase and also other enzymes enzymes. They investigated the combined impact of pectinase
such as amylase and invertase. This coupled with pH- treatment and yeast culture fermentation on ethanol
controlled conditions increased the production of enzyme generation. When treated with pectinase, fermentation was
about 4-folds. The growing cells have a considerably more conducted for 12 hours at 30°C and pH 4.5, increasing the
stable growing environment thanks to pH regulation, which volume of juice. According to numerous studies, the activity
is evident in the enhanced cell development and productivity. of pectin esterase causes wine to have higher quantities of
The relationship between enzyme denaturation and the methanol when pectinolytic enzymes are added during the
instability of conformational configurations and the influence wine-making process. The maximum amount of methanol that
of pH change on enzyme activity has been shown. can be present in wine should be restricted because it is
hazardous. Hence, pectin esterase levels in commercial
combinations should be limited16.
3.0 Industrial Applications of
Pectinases 3.1.3 Coffee fermentation
Fermentation of coffee is essential for the removal of
3.1 Applications In Food Industry mucilage from parchment coffee. The mucilage is composed of
polysaccharide (pectin), cellulose and starch. The mucilage is
3.1.1 Vegetable and fruit processing responsible for prolonging the duration required to dry the
A significant step in the processing of fruits and vegetables coffee brands and may even lead to mold formation. Hence, the
is the use of suitable enzymes to treat the pulp32. Consumers fermentation process is aided my microorganisms present in the
tend to prefer juices that are high in nutrition, have high clarity environment or occur naturally in the coffee fruit, that are
but low viscosity. The clarification of juices is generally capable of producing pectinases. Microorganisms aid by
achieved by liquefaction of the pulps, removal of peels35 and breaking down the mucilage by releasing enzymes. Recent
maceration of vegetables by pectinases. The degradation of studies indicate that fermentation is being used to produce
pectin depends on various factors such as time taken, specialty coffee. According to Vaast et al., a number of
composition of the juice and the enzymes used. The treatment physiological changes take place during this process, including
time ranges from 5 minutes to 6 hours (Aliaa et al.2010), pH can a reduction in the amount of water and simple sugars and
range from 2.5-613, temperature is maintained below 50°C16. In development of fragrance and flavour precursors. More than
the process of making apple juice, pectic enzymes are employed 50 yeast and bacterial species have been found in previous
to speed up juice extraction or pressing as well as to help publications to be active during this process. It is claimed that
separate precipitate by sedimentation, filtering, or when pectinaceous carbohydrates are fermented 57, the
centrifugation. Rhamnogalacturonase, a novel pectinase, and microorganisms engaged in coffee fermentation contribute to
its function in the apple peel lysis were described by52. Initially making ethanol and other higher carboxylic acids. According
identified in Aspergillus aculeatus, this enzyme now appears to Coughlan and Mayer, several extracellular enzymes
to be generated by additional Aspergillus species. Depending produced by Bacillus species may help breakdown pectin
on the specific type of pectinase used, how much is utilised, compounds found in the peel, pulp, and mucilage of coffee
the reaction temperature, and the apple variety employed, cherries. The three key enzymes that microorganisms create are
pectinase treatment can take anywhere between 15 minutes and PL, PG, and PME. Unsaturated galacturonic acids are produced
two hours. The production of grape juice is increased by when pectin is broken down by trans-elimination, a process
pectinase enzyme treatment by up to 30%. Juice extraction rises catalysed by pectin lyase. The primary enzyme involved in the
as pectinase levels increased from 0.05 to 1.5%59. fermentation of coffee is polygalacturonase. In order to
produce pectic acid (polygalacturonic acid), it catalyses the
3.1.2 Wine processing hydrolysis of 1,4-glycosidic bonds. The methoxyl group of
Pectinolytic enzymes are used in the extraction process pectin is de-esterified by pectin methyl esterase, resulting in
of winemaking to increase yield, enable filtration, and improve the formation of pectic acid and methanol. Saccharomyces
colour and flavour. Wine processed enzymatically showed cerevisiae, Candida parapsilosis, Pichia guilliermondi, and
greater stability than control wines before the addition of Pichia fermentans have demonstrated pectinolytic action,
412 | Vol 71(3) | March 2023 | http://www.informaticsjournals.com/index.php/jmmf Journal of Mines, Metals and Fuels
Microbial Production Strategies for the Production of Industrially Important Pectinases: Bioreactor Consideration and its Applications in Various Sectors
resulting in the creation of premium coffee drinks with a are other significant pigments that affect the look of olive
distinctive flavor of caramel and fruits, and intense perceptions oil. The composition of the pigments in the olive oil was
of buttery, and fermented flavors19. unaffected by the pectinolytic enzyme treatment in trials. A.
Giganteus pectinases enhanced the rheological
3.2 Applications In Agriculture Sector characteristics and oil output of olive oil without changing
the chemical makeup of the oil. Consequently, the pectinase
3.2.1 Plant fibre retting and degumming extract from A. giganteus NRRL 10 is appropriate for use in
For its oil-bearing seeds, flax is farmed both in tropical and the production of olive oil.
temperate regions. The remaining cake is used as feed, and
the seeds are crushed to produce linseed oil. Flax retting is a 3.3 Applications In Environmental Sector
procedure used to rot away or dissolve the pectin and cellular
tissues that surround fibre bundles, making it easier to 3.3.1 Wastewater treatment
separate the fibre from the stem. One of the most In the past, numerous processes have been used to treat
environmentally friendly processes is microbial retting. The wastewater from citrus processing plants that contained
retting water in commercial retting facilities is a rich source of pectic compounds. This has a number of drawbacks,
microbes that contribute to the retting of flax. Three effective including increased treatment costs, prolonged treatment
strains capable of producing pectinase, which is required for periods, and chemical-related environmental damage.
flax retting, were chosen to investigate their involvement in Activated sludge treatment poorly breaks down pectinaceous
optimizing the retting process. These strains, which have components found in fruit processing industry wastewater by
specific pectinase activity of 37.17, 33.53, and 28 Umg1 microorganisms. By utilising alkalophilic bacteria58, attempted
respectively, are Bacillus humi, Chryseobacterium culicis, and to establish a new method. An alkalophilic Bacillus sp. GIR
Micrococcus luteus. These strains’ impact on retting time and 621 was discovered from Thai soil, which in alkaline
fibre quality was researched by {reference}. environment at pH 100 developed an extracellular endo
Chryseobacterium culicis, Micrococcus luteus, and Bacillus pectate lyase58. The pretreatment of the wastewater water
humi were used in a combination treatment that reduced with the strain GIR 621-7 succeeded well to get rid of pectic
retting time by 30%. Chryseobacterium culicis and materials. The endo-PL from GIR 621-7 was believed to
Micrococcus luteus were used in a mixed inocula that reduced possess a relative molecular mass of 33 000, a pI of 8/8, an
retting time by 25%. The retting period was 20% shorter when optimal pH of 9, an ideal temperature of 55–60°C, and a
Micrococcus luteus and Bacillus humi were combined. After desired Ca2+ concentration of 0–4 mM22.
microbial retting, the measurement of weight loss, tensile
strength, and the whiteness and yellowness of the fibres was 3.3.2 Bioenergy production
kept track of. The findings suggested that the acquired Environmental biotechnological processes’ typical
particular bacterial strains improved the retting procedure38. treatment goal is the removal of contaminating substances to
produce a liquid, gaseous, or solid residue that can be reused
3.2.2 Oil extraction in a natural environment without harming it.
Pectinases have been used to boost the extraction of Energy is a fundamental prerequisite for the growth of
olive oil and enhance its organoleptic qualities, such as practically every part of a culture in the world. However,
phenolic content. The enzymes are therefore especially using non-renewable energy can result in a number of issues.
pertinent to the olive oil industry. According to a study by Fossil fuel is non- renewable and its overuse will result in a
the most productive strain of pectinase was Aspergillus significant energy problem, which is currently a major issue
giganteus. It was investigated whether the pectinase from A. for the entire globe. Using conventional fossil fuels can also
giganteus could enhance the extraction of olive oil. When produce pollutants like more carbon dioxide and other
A. giganteus extract was added at the start of the malaxation, greenhouse gases, which contribute to global warming. As a
the number of oil droplets increased, and indicating result, bioenergy, a potent renewable fuel that can replace
improved oil release and malaxation capabilities. The primary fossil fuels, has grown over the past few decades, particularly
bottleneck in the production of olive oil is thought to be the in North America and Europe, with the goals of addressing
malaxation stage. Pectinolytic enzymes boost the phenolic the rise in global population, and reducing global warming66.
compounds present by preventing the phenolics from Endopolygalacturonases (EPGs), acetyl – and
complexing with the pectic polysaccharides, according to methylesterases, – arabinofuranosidase, and -galactosidases
many studies. However, using A. giganteus extract in the oil are the pectinases that are most frequently utilised to
extraction did not result in noticeably higher polyphenol hydrolyze pectin. Plants and fungi are the microorganisms that
content. The findings were consistent with those that Peres have been examined the most for bioenergy generation, and
et al. have already published. Carotenoids and chlorophylls only fungi EPGs have had their 3D structures characterised61.
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V Vaishnavi, G Divyashri, Thomson Tanya, S Sejal and T P Krishnamurthy
3.4 Applications In Pharmaceutical Sector medicines), the market is rising quickly to keep up with
consumer demand. Enzyme progress in industrial fields is
3.4.1 Preparation of dietary fibre - functional foods hampered, nonetheless, by their stability and high cost. The
The gastrointestinal system is unfamiliar with foods and enzyme’s resistance to extreme temperatures, unfavorable pH
bacteria, although hypersensitivity reactions to dietary conditions, and organic solvents is crucial for
antigens are rare. There is growing evidence that fermentable commercialization. The employment of enzymes in commercial
prebiotic fibres, including those found in gut-associated operations is constrained by their weak resilience to harsh
lymphoid tissues, influence the immune system in many ways industrial environments. To maximize pectinase synthesis, a
as prebiotics. These fibres may influence immunological variety of methods can be used; however, the cost of general
alterations via the colon bacteria51. Pectin, which wouldn’t be applicability is higher due to the unstable nature of enzymes.
broken down in the gastrointestinal system, has found utility Because it is challenging and expensive to maintain a
as a fibre by raising intestinal viscosity, which in turn, reduces consistent temperature throughout a large-scale bioreactor,
cholesterol absorption. Recently, the PME enzyme changed thermophilic enzymes are receiving more interest in research.
pectin to produce better gel-forming agents, which are One of the most crucial variables is the cost-effectiveness
becoming more and more popular as functional foods.. By of generating pectinase from certain microorganisms and
increasing the excretion of fecal bile acids and neutral sterols, applying environmental parameters. To increase the number
high-viscosity pectin is suggested to reduce cholesterol levels. and quality of finished products, pectin hydrolyzing enzymes
Additionally, it might prevent micelles from forming and/or slow are applicable to many industrial operations Examining the
down the rate at which micelles containing bile acids and manufacturing process and physicochemical characteristics of
cholesterol diffuse through the bolus, which would reduce the new enzymes is crucial in this strategy. Research should be
amount of cholesterol and bile acids that are taken in. These done on the immobilization of pectinase enzyme for reuse in
not only shield the intestine against inflammatory illnesses but order to further lower the overall cost. Because the alterations
also regulate the gut hormones that regulate hunger and insulin are totally under control, genetic engineering is a much more
release60. Acetate also appears to be the main short-chain fatty effective solution. More investigation is needed to identify
acid that leaves the liver and enters the bloodstream. As a strains that produce pectinase alongside other enzymes, and
result, pectins modified by pectinases are used as functional each application calls for a precise combination. The focus of
additives in a variety of food products for probiotic purposes future pectinolytic enzyme research should be on
understanding the molecular mechanisms that regulate enzyme
3.4.2 Formulation for lowering blood glucose and release and the mechanisms by which various pectinolytic
cholesterol enzymes function on various pectic substrates
In this manner, well-designed research can offer crucial
Pectic compounds produced by pectinase treatment of tools for controlling microorganisms to create large amounts
vegetable and fruit peels are being considered as a useful of effective and affordable enzymes. All operations in the future
component in pharmaceutical-based goods because to their seem to be capable of being completed by pectinases.
high fibre content. According to reports and claims made by Industrial uses of pectinases include the production of textiles,
scientists, pectin may play a role in the treatment and the processing of fruits, the extraction of oils, and the
prevention of serious illnesses like diabetes and obesity; fermentation of coffee and tea. The extensive research
however, this is fully dependent on viscosity, molecular mass, demonstrates that pectinases have received priority for the
and esterification level. More soluble fibres are thought to significant creation or enhancement of enzymes for industrial
increase intestinal viscosity, reducing the amount of bile acids purposes. Protein engineering research should be prioritised
that are reabsorbed. As a result, the production of bile acids in order to create enzymes that are dependable and flexible, as
from cholesterol increases, aiding in the blood cholesterol’s well as to improve manufacturing processes utilising novel
poor circulation. By using the pectins that have been digested strains, if this method for exploiting microbial pectinase is to be
from the peels of apples, oranges, soybeans, and other plants, effective.
in vivo and in vitro models have been used to investigate
similar herbal compositions5.
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