You are on page 1of 9

Journal of Applied Microbiology ISSN 1364-5072

ORIGINAL ARTICLE

Molecular analysis of the prevalent microbiota of human


male and female forehead skin compared to forearm skin
and the influence of make-up
T. Staudinger, A. Pipal and B. Redl
Division of Molecular Biology, Biocenter, Medical University Innsbruck, Innsbruck, Austria

Keywords Abstract
forearm skin, forehead skin, make-up, skin
bacteria, skin microbiota. Aims: To compare the bacterial diversity of two different ecological regions
including human forehead, human forearm and to estimate the influence of
Correspondence make-up.
Bernhard Redl, Division of Molecular Biology, Methods and Results: Twenty-two swab-scraped skin samples were analysed by
Biocenter, Innsbruck Medical University,
profiling bacterial 16S rRNA genes using PCR-based sequencing of randomly
A- Fritz Pregl Str. 3, 6020 Innsbruck, Austria.
E-mail: bernhard.redl@i-med.ac.at
selected clones. Of the 1056 clones analysed, 67 genera and 133 species-level
operational taxonomic units (SLOTUs) belonging to eight phyla were identi-
The sequence data from this study have been fied. A core set of bacterial taxa was found in all samples, including Actinobac-
submitted to GenBank under accession no. teria, Firmicutes, and Proteobacteria, but pronounced intra- and interpersonal
HQ16212–HQ16344. variation in bacterial community composition was observed. Only 4Æ48% of the
genera and 1Æ50% of the SLOTUs were found in all 11 subjects. In contrast to
2010 ⁄ 2116: received 22 November 2010,
the highly diverse microbiota of the forearm skin, the forehead skin microbiota
revised 17 January 2011 and accepted 21
February 2011
represented a small-scale ecosystem with a few genera found in all individuals.
The use of make-up, including foundation and powder, significantly enlarged
doi:10.1111/j.1365-2672.2011.04991.x the community diversity on the forehead skin.
Conclusions: Our study confirmed the presence of a highly diverse microbiota
of the human skin as described recently. In contrast to forearm skin, gender
does not seem to have much influence on the microbial community of the
forehead skin. However, the use of make-up was associated with a remarkable
increase in the bacterial diversity.
Significance and Impact of the Study: This study enhances our knowledge
about the highly complex microbiota of the human skin and demonstrates for
the first time the significant effect of make-up on the bacterial diversity of the
forehead skin.

follicles of the sebaceous glands were called resident flora.


Introduction
They form a relatively stable population (Roth and James
The human skin has a number of essential protective 1988; Wilson 2005), able to proliferate on the skin surface
functions in ensuring homeostasis of the whole body as it and in the outer sweat glands (Montes and Wilborn
forms a barrier against harmful effects of the environment 1969). A second group of micro-organisms was called
(Nemes and Steinert 1999; Madison 2003; Elias and Choi transient flora. They originate from external sources,
2005; Proksch et al. 2008). It is colonized by a large through the contact of humans with the environment.
number of micro-organisms representing a complex These micro-organisms do not attach firmly to the skin
ecosystem. Originally, Price (Price 1938) classified the and their composition varies permanently. The resident
microbiota of human skin into two groups. Those organ- bacterial flora plays an important physiological role in
isms that grow on the surface and in the stratum corne- protecting the skin from being infected by external patho-
um within the outmost layers of the epidermis and in the genic micro-organisms (Wilson 2005). Any change in the

ª 2011 The Authors


Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology 1381
Skin microbiota of human forehead compared to forearm T. Staudinger et al.

skin microbial balance can lead to harmful effects (Meloni subjects used make-up. Subjects were instructed not to
and Schito 1991; Brook 2000; Wilson 2005). Thus, wash with anything for an 8-h interval prior to sampling.
research on the microbiota has a long tradition. The use Samples were taken from 2 · 2 cm of skin, from the
of molecular approaches instead of culture-dependent central area of the forehead and volar left (flexor) fore-
assays has helped to uncover the great diversity of skin arm, midway between wrist and elbow, by swabbing the
microbiota (Dekio et al. 2005; Gao et al. 2007; Fierer skin for 1 min with a sterile cotton swab that had been
et al. 2008; Grice et al. 2008, 2009). These studies revealed soaked in sterile 0Æ15 mol l)1 NaCl with 0Æ1% Tween 20.
a low level of interpersonal consensus with respect to bac- Samples from forehead and forearm were taken at the
terial community membership and structure, which is same time. To minimize sample cross-contamination, a
approximately equal to intrapersonal variation. Also, a fresh pair of sterile gloves was used for each individual
highly dynamic microbiota composition was observed to sampling process. Reagent controls consisted of sterile
fluctuate greatly over time and gender variations have cotton swabs moistened with a solution of sterile
been found (Gao et al. 2007; Fierer et al. 2008; Grice 0Æ15 mol l)1 NaCl and 0Æ1% Tween 20 and placed directly
et al. 2008, 2009). in 1Æ5-ml microcentrifuge tubes. The study was approved
In this work, we have investigated the diversity of skin by the Ethics Committee of the Medical University Inns-
bacteria present on two different sites of the body, namely bruck (AN3616 ⁄ 4Æ13).
the forehead and the forearm. An important feature of
the forehead skin is the presence of both sebaceous and
DNA extraction from swabs
eccrine glands in high densities (Wilson 2005). This
results in enriched nutrient supplementation and in DNA was extracted using the DNeasy Blood and Tissue
elevated levels of antimicrobial peptides. The forehead is kit (Qiagen, Hilden, Germany). As Gram-positive bacteria
described as a relatively oily and moist region and is one are more resistant to lysis than Gram-negative bacteria,
of the most acidic regions of the skin. Because of its the manufacturer’s protocol for genomic DNA isolation
exposed nature, the forehead is subject to large tempera- from Gram-positive bacteria was followed with modifica-
ture variations. Furthermore, the use of cosmetics might tions. The cotton tip of each swab was broken off directly
influence the number and species of bacteria present on into a 1Æ5-ml tube to which 180 ll of lysis buffer has been
the forehead (Holland and Bojar 2002). Forearm skin is added. The tubes were capped and shaken by hand hori-
described as a relatively dry environment, with a few zontally for 30 s. The remaining steps were performed as
eccrine and apocrine glands, and only a low density of suggested by the manufacturer.
sebaceous glands (Wilson 2005). However, the skin of the
forearm is in certain climate zones often covered with
16S rRNA gene amplification, cloning procedure and
clothes, which might affect the local environment, and
sequencing
thus altering the growth conditions of the microbiota.
PCR amplification was performed with primers specific
for conserved bacterial 16S rRNA sequences. PCR primers
Materials and methods
F 8: 5¢-AGAGTTTGATYMTGGCTCAG-3¢ and R 1401:
5¢-CGGTGTGTACAAGGCCCG-3¢ amplified a bacterial
Sample collection
16S rRNA gene fragment from nucleotide positions
Specimens from superficial skin were obtained from the 8–1401 (Escherichia coli numbering, GenBank J01859).
central forehead and the volar left forearm of 11 healthy These primers span over 8 (V1–V8) of the nine
young subjects, five men and six women, with no history hypervariable regions of the bacterial 16S rRNA and were
of dermatological disorders or other chronic medical chosen because most sequences in databases are available
disorders and with no current skin infections. Samples for regions V1–V8 (Chakravorty et al. 2007). PCR ampli-
were collected between late winter and early spring from fication was performed using the following conditions
subject living in the area of Innsbruck, which has a classi- (final concentrations): 1· GoTaq reaction buffer (Pro-
cal alpine climate. The mean age of the subjects was mega, Madison, WI, USA), 0Æ2 mmol l)1 dNTPs, 50 pmol
25Æ8 years (range 22–29 years). The skin characteristics of of each primer and 2Æ5 U GoTaq Polymerase (Promega)
all subjects are presented in Table S1. None of the sub- and 10 ng of DNA in a total volume of 50 ll. Twenty-
jects had received any antibiotics for at least 1 month. seven cycles of PCR amplification were performed. Each
Female subjects F2, F4 and F5 used make-up (foundation of them entailed denaturation at 95C for 60 s, annealing
and powder) every day, whereas female subjects F1, F3 at 48C for 60 s and primer extension at 72C for 60 s.
and F6 never used make-up but used skin cleansers and PCR products were analysed on 1Æ2% agarose gels, stained
skin cosmetics like moisturizers. None of the male with ethidium bromide. The PCR fragments were gel

ª 2011 The Authors


1382 Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology
T. Staudinger et al. Skin microbiota of human forehead compared to forearm

eluted using Wizard SV Gel and PCR Clean-Up System replaced by new ones from the same master plate and the
(Promega). Ten nanograms of DNA was ligated with the same subject to obtain 48 clones for each skin sample.
pGEM-T vector (Promega) and transformed into E. coli These experiments revealed the presence of eight phyla,
DH5a competent cells. The complete insert was cycle 67 genera and 133 SLOTUs, when using a SLOTU cut-off
sequenced using M13 primers for amplification and T7 of 98% (Table S2). Of the 1056 clones investigated, 1051
and SP6 primers for sequencing on an ABI PRISM 3100 clones (99Æ53%) shared a nt sequence homology of ‡98%
Genetic Analyser (Applied Biosystems, Carlsbad, CA). with cultivated type strains and five clones (0Æ47%)
showed only significant homology to noncultured bacte-
ria. These include uncultured members of Acidobacteria
Database and phylogenetic analysis
and members of the TM7 phylum. No clones representing
Analysis of closest relatives was performed by comparison previously uncharacterized phylotypes were found.
of the entire amplified rDNA sequence (without primer Actinobacteria, Firmicutes, and Proteobacteria were the
sequences) with sequences available in the Ribosomal predominant phyla, representing 1027 (97Æ25%) clones
Database Project (RDP) II (RDP Release 10Æ23) and and accounting for 36 (59Æ75% of the clones), 44
GenBank databases, by using the standard nucleotide- (25Æ09%) and 37 (12Æ41%) SLOTUs. These three phyla
nucleotide Blast program (Blastn-megablast; National were observed in all 11 subjects (Fig. 1a,b). The phylum
Center for Biotechnology Information, Bethesda, MD). Bacteroidetes was observed in samples from eight subjects,
Forty-eight clones were analysed from each skin sample. and the phylum Fusobacteria in samples from three sub-
Sequences were examined for chimerism using Bellero- jects. Acidobacteria were observed in samples from two
phon at Greengenes (DeSantis et al. 2006). subjects, and each of the phyla Deinococcus-Thermus and
TM7 were observed in one subject (Fig. 1a,b).
Three genera including Propionibacterium (46Æ78% of
Statistical analysis
all clones), Staphylococcus (14Æ39%) and Corynebacterium
The total number of species-level operational taxonomic (5Æ40%) were observed in all 11 subjects analysed. How-
units (SLOTUs) (SLOTU cut-off was 98%) that may be ever, of the 67 genera, 30 genera (44Æ78%) were identified
present in the sampled human skin and its associated in only one subject, 11 (16Æ42%) in two subjects and 6
confidence intervals were calculated by using the non- (8Æ96%) in three subjects; only 17 (25Æ37%) genera were
parametric richness estimator Chao1 (EstimateS ver. observed in ‡4 subjects, indicating substantial interper-
5.0.1.) (Hughes et al. 2001). sonal variation at the genus level.
Principal coordinate analysis (PCoA) was performed A total of 133 SLOTUs were found, reflecting the
within the UniFrac online suite of tools (http://bmf2.colo microbiota of the forehead and of the volar left forearm
rado.edu/unifrac/index.psp). For this purpose, a phylo- skin (Table S2). The number of SLOTUs in each subject
genetic tree generated with mega ver. 4.0 (Tamura et al. ranged from 16 to 42 (mean: 26Æ55 ± 7Æ57) (Fig. 2a,b).
2007), along with environmental labels, was imported into The most numerous species identified belonged to the
UniFrac (Lozupone et al. 2006). To facilitate the visuali- genera Corynebacterium, Streptococcus and Staphylococcus.
zation of sample dissimilarity and diversity, the first two Propionibacterium acnes was the most prevalent species
orthogonal principal axes were obtained based on the detected in all 11 subjects, accounting for 45Æ74% of all
sample dissimilarity and were plotted to show the distri- clones analysed.
bution of samples in a two-dimensional space. The P test, To estimate the SLOTU richness, the expected number
also available on the UniFrac suite of tools, assessed trees of SLOTUs was calculated using the Chao1 nonparametric
for nonrandom distributions of lineages according to estimator. The results were visualized by collector’s curves
environment. All P values reported were also corrected for of observed and estimated SLOTU richness (Fig. S1a,b),
multiple comparisons (Martin 2002; Lozupone et al. and the 95% confidential intervals were calculated to esti-
2006). mate the precision of the richness estimation (Hughes
et al. 2001). We estimated that the microbiota of the
forehead samples contains c. 65 SLOTUs (95% CI, range
Results
50–107). Consequently, the 42 SLOTUs observed in this
study represented 65Æ6% (95% CI, 46Æ7–68Æ0%) of the esti-
Clone libraries, classification and distribution of clones
mated species or phylotypes. On the forearm skin, we
Samples from superficial skin of 11 healthy subjects were observed 128 SLOTUs in our study. However, the Chao1
collected, and a total of 1056 clones were analysed. Ini- score estimated that the microbiota of the forearm sam-
tially, 25 clones containing putative chimeric sequences ples contains c. 170 SLOTUs (95% CI, range 149–211).
were removed from the phylogenetic analyses and were Based on this prediction, the present study identified

ª 2011 The Authors


Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology 1383
Skin microbiota of human forehead compared to forearm T. Staudinger et al.

(a)
100%

80%

60%

40%

20%

0%

(b)
100%

80%

60%

40%

20%

0%
F1 F2 F3 F4 F5 F6 M1 M2 M3 M4 M5 F M Total
Total Total

Figure 1 Relative abundance of the most prevalent bacterial groups associated with each microenvironment depicted for each of the subjects
investigated. (a) Forehead skin, (b) forearm skin. Superscripts indicate phylum: 1, Actinobacteria; 2, Firmicutes; 3, Proteobacteria; 4, Bacteroidetes;
5, Acidobacteria; 6, Deinococcus-Thermus; 7, Fusobacteria. F, female; M, male. ( ) Propionibacteria spp.1; ( ) Corynebacteria spp.1; ( ) Other
Actinobacteria1; ( ) Bacillales2; ( ) Lactobacillales2; ( ) Clostridiales2; ( ) c-Proteobacteria3; ( ) a-Proteobacteria3; ( ) b-Proteobacteria3; ( )
Bacteriodales4; ( ) Flavobacteriales4; ( ) Acidobacteriales5; ( ) Deinococcales6; ( ) Fusobacteriales7; ( ) TM7 Phylum.

75Æ3% (95% CI, 65Æ9–78Æ5%) of the SLOTUs in this bacte- on the forehead skin, Propionibacterium (73Æ11% of all
rial ecosystem. This is in agreement with Gao et al. (Gao clones) and Staphylococcus (15Æ91% of all clones) were
et al. 2007), who calculated c. 246 SLOTUs (95% CI, most abundant. These two genera were detected in all 11
range 217–301) for this area. The Chao1 estimates for subjects and together they accounted for nearly 90% of all
both sampling sites stabilized to the end of the collector’s clones. These findings indicate a small ecosystem on the
curves indicating that the estimated richness might not forehead skin (Fig. 1a), which was also evident on the
change with further sampling (Fig. S1a,b). species level (Fig. 2a). Propionibacterium acnes was the
most predominant species on the forehead, accounting for
72Æ54% of all clones, but Staphylococcus epidermidis
Forehead skin microbiota and the effect of gender
(12Æ31%) was also frequently isolated from the forehead
For the forehead samples, we observed four phyla (Fig. 1a), (Table S3).
with Actinobacteria being the most frequently isolated When comparing the samples from all subjects, the
microbial phylum in both men and women, representing forehead skin of women seems to harbour larger bacterial
75Æ38% of all clones of the forehead skin (Table S2). Sub- diversity on the genus level (Fig. 1a). On this site, women
jects F4 (make-up using) and M3 contained an increased harboured on average 7Æ5 genera per subject and men
proportion of Firmicutes sequences compared with the three genera per subject (Table S2). Also, on the species
other male and female subjects (Fig. 1a). Furthermore, the level women showed an increased bacterial diversity com-
phyla Firmicutes and Proteobacteria were detectable in both pared with male subjects (P £ 0Æ01) (Fig. 2a). However,
sexes. The phylum Bacteroidetes could only be detected in when excluding subjects using make-up (F2, F4 and F5)
female subjects (Fig. 1a). From the 30 genera observed in the comparison of the forehead microbiota of women

ª 2011 The Authors


1384 Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology
T. Staudinger et al. Skin microbiota of human forehead compared to forearm

(a) 18 (Fig. 2b). On the female forearm skin, an average of 25Æ2


16 SLOTUs per subject were found whereas an average of
14 18Æ4 SLOTUs were found on male forearm skin. The most
Number of Slotus

12 abundant species on the forearm was P. acnes, followed


10 by Staph. epidermidis, Rhizobium tropici and Micrococcus
8 luteus (Table S3).
6 Noteworthy, certain genera were exclusively found in
4 make-up-using women (Table S2). Examples include
2
Aerococcus (exclusively found in F5, both on forehead and
0
F1 F2 F3 F4 F5 F6 M1 M2 M3 M4 M5 forearm), Lautropia (forehead of F5; forearm of F4) and
Subjects Gordonia (forehead of F2 and F5; forearm of F2).

(b) 35
Effect of make-up on the forehead skin microbiota
30
Number of Slotus

25 Female subjects F2, F4 and F5, who used make-up every


day, showed significantly higher microbial diversity
20
(P = 0Æ04) on their forehead skin than other female or
15 male subjects (P = 0Æ27) (Fig. 1a). These subjects
10 harboured an average of 10Æ33 genera ⁄ subject, compared
5 to 5Æ66 genera per subject in the female subjects without
0
make-up and to 3Æ2 genera per subject in male subjects
F1 F2 F3 F4 F5 F6 M1 M2 M3 M4 M5 (Table S2). Higher microbial diversity of the make-up
Subjects users is also evident from the number of SLOTUs found
with an average of 13Æ33 SLOTUs per subject present on
Figure 2 Distribution of species-level operational taxonomic unit
richness of bacterial communities present on the forehead (a) and
the forehead skin of make-up users compared to six
forearm skin (b). Subjects F2, F4 and F5 were make-up users. SLOTUs per subject in the female subjects without make-
up and to 4Æ2 SLOTUs per subject in male subjects
(Fig. 2a). Furthermore, the genera Selenomonas (in F5),
and men, no significant differences (P = 0Æ26) in the bac- Aggregatibacter (in F5) and Aquicella (in F5) were exclu-
terial diversity on the species level were detected, and also sively found in make-up-using women.
the numbers of detected SLOTUs were similar (Fig. 2a). Thus, the use of make-up appears to be the most
Thus, gender does not seem to be a factor relevant for important factor for causing differences in the bacterial
microbial diversity on the forehead of the subjects investi- diversity on the forehead skin of the subjects investigated.
gated. Skin nature does not appear to be a highly relevant
factor, because only female F4 had a more oily skin, but
all other women had normal or dry forehead skin
Forearm skin microbiota A and the effect of gender
(Table S1).
On the forearm skin, eight phyla were identified
(Table S2 and Fig. 1b). Actinobacteria, Firmicutes, Proteo-
Comparison of forehead and forearm microbiota
bacteria, Bacteroidetes and Fusobacteria were found on
both men and women. The phylum Deinococcus-Thermus The comparison of the microbiota of forehead and fore-
was only detected in men, and an uncultured member of arm skin clearly showed that the bacterial diversity of the
the phylum Acidobacteria was only present in women. forearm was considerably greater than that of the
The most frequently isolated genera on the forearm forehead (Fig. 1a,b). Even when including the data from
were Propionibacterium (20Æ45%), Staphylococcus (12Æ88%) the make-up users, only 30 genera were observed on the
and Corynebacterium (10Æ04%). In total, only 14 genera of forehead compared to 62 genera on the forearm
the 62 genera detected on the forearm were observed in (Table S2). Also on the species level the microbiota of the
‡4 subjects, indicating substantial interpersonal diversity forearm showed a much higher biodiversity than that of
at the genus level. A comparison of the microbiota diver- the forehead. This is manifested by a mean of 23 SLOTUs
sity of women and men showed clear differences on the per subject compared to a mean of 7Æ18 SLOTUs per sub-
genus level (mean 18Æ5 genera per subject vs 14Æ4 genera ject on forehead skin (Fig. 2a,b). However, the bacterial
per subject). A similar result is also obtained when communities from both sites showed some similarity in
comparing the number of SLOTUs found (P £ 0Æ01) qualitative terms. Of the 42 SLOTUs found on the

ª 2011 The Authors


Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology 1385
Skin microbiota of human forehead compared to forearm T. Staudinger et al.

forehead skin only five SLOTUs, including Acinetobacter were more similar to each other than they were to
haemolyticus, Aggregatibacter segnis, Aquicella siphonis, forearm skin samples (Fig. 3). An exception was M3,
Paracoccus sp., Selenomonas noxia were not present in the probable because of the high numbers of Staph. epidermi-
forearm samples (Table S2). Nevertheless, the overall mic- dis in this sample. Additionally, the forehead samples of
robiota differed substantially amongst the 11 subjects subject F1, F3 and F6 (women not using make-up) clus-
analysed (Fig. 1a,b). Propionibacterium acnes was the only tered closely to the forehead skin samples of the male
species present in all subjects on the forehead, and only subjects. The forehead samples of the make-up-using
four of the 42 SLOTUs were observed in more than ‡4 women (F2, F4 and F5) were more distant. Clustering of
subjects (Table S2). Conversely, 66Æ67% of all of the indi- the forearm samples of the 11 subjects revealed that they
vidual SLOTUs were identified only in a single individual. were not as closely related to each other as the forehead
The microbiota of the forearm revealed similar results. samples, clearly indicating greater diversity amongst the
Again P. acnes was the only SLOTU present in all 11 sub- forearm samples (Fig. 3).
jects (Table S2), 14 SLOTUs of the 128 SLOTUs were To determine whether individuals share a common skin
observed in more than ‡4 subjects and 54Æ69% of all of microbial diversity profile, the P test was used to assess
the individual SLOTUs were identified in a single subject intrapersonal and interpersonal variation (Table S4). Anal-
(Table S2). ysis of each pair of samples showed that no significance
This study also revealed that Gram-positive bacteria was found in skin samples from the same subject when
were much more abundant on the skin areas investigated both sites were considered. Furthermore, this analysis
(Table S5). About 95% of the bacteria found on forehead showed that if significance appeared between two samples
areas of both sexes were Gram-positive species. Gram- from different subjects, it did not follow any trend.
positive bacteria were also predominant on the forearm
areas (78Æ75 and 71Æ88%). The forearm areas of women
Discussion
showed slightly higher numbers of Gram-negative species
than male forearms (27Æ08% compared to 21Æ05%). Analysis of 1056 clones isolated from the superficial
To evaluate sample diversity and the relationship forehead and forearm skin revealed eight phyla, 67 genera
amongst samples PCoA was performed. This analysis sug- and 133 SLOTUs. Of these, the forehead microbiota
gested that the forehead skin samples from male subjects harboured four phyla, 30 genera and 42 SLOTUs, with an
estimated species coverage of c. 65Æ6%, and the forearm
PCA - P1 vs P2 microbiota harboured eight phyla, 62 genera and 128
0·5 SLOTUs, with estimated species coverage of c. 75Æ3%.
The most abundant phyla on the forehead as well
0·4
as on the forearm were Actinobacteria, Firmicutes and
P2 - Percent variation explained 18·91%

M4a Proteobacteria. These three phyla have also been reported


0·3
to be predominant on other skin areas (Dekio et al. 2005;
F2a
0·2 Gao et al. 2007; Fierer et al. 2008; Grice et al. 2008,
M1a
2009). The phylum Bacteroidetes could only be harboured
0·1 F3a F2f
on the forehead of female subjects. We cannot rule out
F5a
M1f
F6f F3f M2f the possibility, however, that increased sampling would
M4f F1f M5f
0·0 F6a show the presence of this phylum also in male subjects.
F5f
F4a
M5a On the forearm skin, the phylum Deinococcus-Thermus
–0·1 MBa was only detected in men, and an uncultured member of
M2a
M3f the phylum Acidobacteria was only present in women.
–0·2 F1a Again, we cannot rule out the possibility that with
F4f increased sampling these two latter phyla might be found
–0·3
in both genders.
–0·4 Although there appears to be a core set of phylotypes
–0·3 –0·2 –0·1 0·0 0·1 0·2 0·3 0·4 present on superficial human skin, the overall microbiota
P1 - Percent variation explained 48·61% differed substantially amongst the 11 subjects. Three
genera (Propionibacteria, Staphylococcus, and Coryne-
Figure 3 Principal coordinate analysis of species-level operational
taxonomic unit relatedness of 22 skin samples from 11 subjects. The
bacteria) were commonly found, but only 1Æ5 % of the
axes are labelled with the per cent of the variation explained by each SLOTUs and 4Æ48% of the genera were found in all 11
principal component. The circle represents all forehead skin samples, subjects. In contrast, 50Æ38% of all of the individual
which cluster closely together. F, female; M, male; f, face; a, arm. SLOTUs and 46Æ27% of the genera were identified only in

ª 2011 The Authors


1386 Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology
T. Staudinger et al. Skin microbiota of human forehead compared to forearm

a single individual. These data indicate that the superficial bers. Acinetobacter junii and Deinococcus AJ549111 were
human skin microbiota is highly diversified with a low not found in our study, but we detected other closely
level of interpersonal consensus. Similar findings were related Acinetobacter and Deinococcus species (Table S2).
reported in recent studies (Gao et al. 2007; Fierer et al. Enhydrobacter aerosaccus, identified in a study by Gao
2008; Grice et al. 2008, 2009). A pairwise comparison of et al. (Gao et al. 2007), was not detected in subjects of
all subjects revealed that significance did not follow any the present study.
trend, suggesting that occurrence of significance was more We also detected some potential pathogens on the fore-
random than directed amongst different subjects. The low head as well as on the forearm skin, such as Staphylococ-
interpersonal consensus is also evident when comparing cus aureus, Neisseria meningitis, Streptococcus pneumonia
our results to the study of Gao et al. (2007), because of and Haemophilus influenzae. These organisms are consid-
the 67 genera found in our study only 36 genera were ered as transient colonizers of the human skin producing
also found in the previous study. various kinds of skin-damaging toxins and are suspected
The most frequently isolated organism on the forehead to play a role in serious skin diseases (Roth and James
as well as on the forearm was P. acnes, which was the 1988; Wilson 2005). They are ubiquitously present in the
only species present in all skin samples of the ten environment, e.g. in soil, tap water and crops. Therefore,
subjects. Moreover, the forehead microbiota was domi- these species are able to cope with harsh environmental
nated by P. acnes accounting for 72Æ54% of all clones. In conditions. Consequently, they are well equipped to sur-
contrast, P. acnes represented only 18Æ94% of the clones vive the rapidly changing conditions of the surface of the
isolated from the forearm skin. Thus, we conclude that a skin and it is possible that the skin microbiota may be a
rich population of Propionibacteria is a stable characteris- reservoir of such opportunistic pathogens derived from
tic of the skin of the forehead. So far, no other exposed the environment (Dekio et al. 2005).
microenvironment of the human body has been found to It was reported previously that Gram-positive bacteria
be similarly dominated by a single bacterial species (Evans are more abundant on superficial human skin than
1975). Propionibacterium, and P. acnes in particular, is the Gram-negative bacteria (Roth and James 1988; Wilson
most dominant organism in normal human skin, as 2005; Gao et al. 2007). This was confirmed by our study.
shown in prior culture-based studies and in molecular On the other hand, from culture-based studies it has also
analyses (Fredricks 2001; Gao et al. 2007, 2008). Although been suggested that the skin of male individuals, being
it has been suggested that P. acnes is associated with seri- more humid because of enhanced sweat production, is
ous skin disorders, such as acne vulgaris and rosacea more frequently colonized by Gram-negative bacteria than
(Leyden 2001), it is likely that it might protect the skin that of women, as high moisture is necessary for survival
against more aggressive microbes (Eady and Ingham of these bacteria (Roth and James 1988). This observation
1995; Leyden 2001; Bek-Thomsen et al. 2008). It is not could not be confirmed by our study. We found that the
yet clear what factors dictate the level of the Propionibac- skin of women was more frequently colonized by
teria population, but it seems probable that the critical Gram-negative species than that of men, which is in accor-
substances will be found in sebum (Evans 1975). dance with previous molecular genetic analysis (Gao et al.
It is interesting to note that subject F4 appears to be a 2007). As Gram-negatives were more abundant on the
major outlier with respect to community composition. forearm, it might be suggested that occlusion of the skin
On the forehead skin of subject F4, P. acnes was found to by dressing could have a profound effect on the micro-
be underrepresented. Instead, an increased proportion of environment of the forearm skin area by reducing the
Firmicutes sequences was detected. These sequences evaporate water loss. Thus, increasing the water content of
appear to be derived from Staphylococcus species, suggest- the occluded region may lead to a higher humidity suitable
ing that subject F4 was colonized with Staphylococcus, as for the growth of Gram-negative bacteria (Wilson 2005).
found by cultivation studies in c. 5–10% of healthy adults In contrast, the cutaneous microbiota of the forehead
(Nagase et al. 2002). As subject F4 was using make-up, is always exposed to the external environment and there-
this different bacterial composition might be attributed to fore subject to UV, temperature and enhanced mechanical
an influence of make-up. stress. Probably Gram-negative bacteria are more sensitive
Of the ten most common species on the forearm skin to these conditions because of their cell wall structure
found by Gao et al. (2007), six (including P. acnes, (Roth and James 1988; Wilson 2005). This might explain
Corynebacterium tuberculostearicum, Corynebacterium our finding of their less abundant presence on the
mucifaciens, Streptococcus mitis, Staph. epidermidis and forehead skin.
Corynebacterium amycolatum) were also found in our Analysis of the distribution of SLOTUs between
study. However, in our study only P. acnes, Staph. forehead and forearm revealed that only five of the 42
epidermidis and Strep. mitis were present in high num- SLOTUs found in the forehead samples were not shared

ª 2011 The Authors


Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology 1387
Skin microbiota of human forehead compared to forearm T. Staudinger et al.

with the forearm samples, but quantitatively there was Brook, I. (2000) The effects of amoxicillin therapy on skin
more discrepancy between the two regions. The forehead flora of infants. Pediatr Dermatol 17, 360–363.
skin harboured only a few species (mean: 7Æ18 SLOTUs Chakravorty, S., Helb, D., Burday, M., Connell, N. and Alland,
per subject). Whereas the forearm microbiota showed a D. (2007) A detailed analysis of 16S ribosomal RNA gene
more complex community structure (mean: 23 SLOTUs segments for the diagnosis of pathogenic bacteria. J Micro-
per subject), suggesting that the forearm skin is a highly biol Methods 69, 330–339.
diverse ecosystem. This difference in bacterial diversity Dekio, I., Hayashi, H., Sakamoto, M., Kitahara, M., Nishikawa,
between the forehead samples and the forearm samples T., Suematsu, M. and Benno, Y. (2005) Detection of
potentially novel bacterial components of the human skin
was statistically significant (P = 0Æ03). Together these
microbiota using culture-independent molecular profiling.
results demonstrate that the phylotype richness of the
J Med Microbiol 54, 1231–1238.
forearm was higher than that of the forehead skin area.
DeSantis, T.Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie,
These results were surprising, as the forehead was
E.L., Keller, K., Huber, T., Dalevi, D. et al. (2006) Greeng-
expected to have higher levels of diversity than the fore-
enes, a chimera-checked 16S rRNA gene database and
arm because of the more frequent contact with potential workbench compatible with ARB. Appl Environ Microbiol
invaders from the environment. On the other hand, a 72, 5069–5072.
higher concentration of antimicrobial substances on the Eady, E.A. and Ingham, E. (1995) Propionibacterium acnes –
forehead could inhibit the growth of some species and friend of foe? Rev Med Microbiol 5, 163–173.
the dominant presence of P. acnes could protect this site Elias, P.M. and Choi, E.H. (2005) Interactions among stratum
from other species by competing for nutrients, niches and corneum defensive functions. Exp Dermatol 14, 719–726.
receptors (Gao et al. 2008). Evans, C.A. (1975) Persistent individual differences in the
Comparing all forehead samples from men and women bacterial flora of the skin of the forehead: numbers of
revealed significant diversity amongst them. However, Propionibacteria. J Invest Dermatol 64, 42–46.
when samples from make-up-using women (F2, F4 and Fierer, N., Hamady, M., Lauberb, C.L. and Knight, R. (2008)
F5) were excluded, these differences between male and The influence of sex, handedness, and washing on the
female samples were not longer observed. Thus, the use diversity of hand surface bacteria. Proc Natl Acad Sci USA
of make-up appears to strongly interfere with the compo- 105, 17994–17999.
sition of the bacterial communities. It is important to Fredricks, D.N. (2001) Microbial ecology of human skin in
note, however, that further experiments using higher health and disease. J Investig Dermatol Symp Proc 6,
numbers of samples are needed to substantiate this con- 167–169.
clusion. For instance, the observed differences might also Gao, Z., Tseng, C.H., Pei, Z. and Blaser, M.J. (2007) Molecular
be a consequence of a bacterial contamination of the analysis of human forearm superficial skin bacterial biota.
Proc Natl Acad Sci USA 104, 2927–2932.
make-up. In fact, especially the presence of Aquicella,
Gao, Z., Tseng, C.H., Strober, B.E., Pei, Z. and Blaser, M.J.
which is usually found in thermal water, strongly indi-
(2008) Substantial alterations of the cutaneous bacterial
cates a contamination of make-up. Use of skin cleansers
biota in psoriatic lesions. PLoS ONE 3, e2719.
and skin moisturizers does not appear to influence the
Grice, E.A., Kong, H.H., Renaud, G., Young, A.C., NISC
skin in a way as make-up does. Female subjects F1, F3
Comparative Sequencing Program, Bouffard, G.G.,
and F6 in our study never used make-up but used skin Blakesley, R.W., Wolfsberg, T.G. et al. (2008) A diversity
cleansers and skin cosmetics like moisturizers in their profile of the human skin microbiota. Genome Res 18,
daily life. These subjects did not show increased numbers 1043–1050.
of phylotypes on the forehead skin. Grice, E.A., Kong, H.H., Conlan, S., Deming, C.B., Davis, J.,
Young, A.C., NISC Comparative Sequencing Program,
Acknowledgements Bouffard, G.G. et al. (2009) Topographical and temporal
diversity of the human skin microbiota. Science 324, 1190–
The research was partially funded by a COMET project 1192.
from the Austrian Research Promotion Agency (FFG). Holland, K.T. and Bojar, R.A. (2002) Cosmetics: what is their
The authors thank Rajam Csordas and Alexandra Lusser influence on the skin microflora? Am J Clin Dermatol 3,
for critical reading and correction of the manuscript. 445–449.
Hughes, J.B., Hellmann, J.J., Ricketts, T.H. and Bohannan,
B.J.M. (2001) Counting the uncountable: statistical
References approaches to estimating microbial diversity. Appl Environ
Bek-Thomsen, M., Lomholt, H.B. and Kilian, M. (2008) Acne Microbiol 67, 4399–4406.
is not associated with yet-uncultured bacteria. J Clin Leyden, J.J. (2001) The evolving role of Propionibacterium
Microbiol 46, 3355–3360. acnes in acne. Semin Cutan Med Surg 20, 139–143.

ª 2011 The Authors


1388 Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology
T. Staudinger et al. Skin microbiota of human forehead compared to forearm

Lozupone, C., Hamady, M. and Knight, R. (2006) UniFrac – an Wilson, M. (2005) The skin and its indigenous microbiota. In
online tool for comparing microbial community diversity Microbial Inhabitants of Humans ed. Wilson, M.
in a phylogenetic context. BMC Bioinformatics 7, 371. pp. 51–104 Cambridge: Cambridge University Press.
Madison, K.C. (2003) Barrier function of the skin: ‘‘la raison
d’être’’ of the epidermis. J Invest Dermatol 121, 231–241.
Supporting Information
Martin, A.P. (2002) Phylogenetic approaches for describing
and comparing the diversity of microbial communities. Additional Supporting Information may be found in the
Appl Environ Microbiol 68, 3673–3682. online version of this article:
Meloni, G.A. and Schito, G.C. (1991) Microbial ecosystems as Figure S1 Collector’s curves of observed and estimated
targets of antibiotic actions. J Chemother 1, 179–181. SLOTU richness of pooled forehead (a) and forearm (b)
Montes, L.F. and Wilborn, W.H. (1969) Location of bacterial skin samples from the 11 subjects investigated.
skin flora. Br J Dermatol 81, 23–25. Table S1 Skin characteristics of the individuals investi-
Nagase, N., Sasaki, A., Yamashita, K., Shimizu, A., Wakita, Y., gated, (F) female, (M) male.
Kitai, S. and Kawano, J. (2002) Isolation and species Table S2 Representation of all 1056 clones investigated,
distribution of staphylococci from animal and human skin.
(F) female, (M) male.
J Vet Med Sci 64, 245–250.
Table S3 Most common species represented in forehead
Nemes, Z. and Steinert, P.M. (1999) Bricks and mortar of the
and forearm samples.
epidermal barrier. Exp Mol Med 31, 5–19.
Table S4 Pairwise P-values of P-test analysis in bacterial
Price, P.B. (1938) The bacteriology of normal skin: a new
population distribution of the 22 samples from the 11
quantitative test applied to a study of the bacterial flora
and the disinfectant action of mechanical cleansing. J Infect subjects, (F) female, (M) male, (f) face, (a) arm.
Dis 63, 301–318. Table S5 Representation of all Gram-positive and
Proksch, E., Brandner, J.M. and Jensen, J.M. (2008) The skin: Gram-negative phyla detected on the superficial human
an indispensable barrier. Exp Dermatol 17, 1063–1072. skin of the forehead and of the forearm in 11 subjects.
Roth, R.R. and James, W.D. (1988) Microbial ecology of the Please note: Wiley-Blackwell is not responsible for the
skin. Annu Rev Microbiol 42, 441–464. content or functionality of any supporting materials
Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) supplied by the authors. Any queries (other than missing
MEGA4: Molecular Evolutionary Genetics Analysis material) should be directed to the corresponding author
(MEGA) software version 4.0. Mol Biol Evol 24, 1596–1599. for the article.

ª 2011 The Authors


Journal of Applied Microbiology 110, 1381–1389 ª 2011 The Society for Applied Microbiology 1389

You might also like