Professional Documents
Culture Documents
collagen synthesis
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agen
.
↳
insoluble twpocollagen
↳ deaminate lysine collagen
.
oxidase t
hydroxy lysine residues to form
lysyl
respectively ft product of )
ayysinethydroxyallysine ammonia as rxn
.
Wo ends of molecules
modified peptides @ collagen
↳ forms covalent bonds w/ other
lysine or
lysine
residues .
( cross-linking )
anyone allow
stdassembly
.
↳ how
collagen fiber .
( non -
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)
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tropoelastin
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relaxed elastic
Proteoglycans Description Found in Proteoglycans: Contain mainly GAGs (95%) and are a part of the ECM.
Chondroitin Sulfates Most abundant GAGs in the body Cartilage, Bone, Ligaments, Aorta Glycosaminoglycans (GAGs): long, unbranched chains of negatively charged sugars, and are
sulfated. Do not have a protein.
Keratan Sulfates "Special" because they contain a sulfated Cartilage, Cornea (where it's -They're composed of repeating disaccharide units. In position 1, it contains an acidic sugar (such as
galactose in position 1 and the most needed for transparency) glucuronic acid/Iduronic acid), and in position 2, it contains an amino sugar (such as glucosamine,
heterogenous regarding their sugars galactosamine), which can be acetylated.
Dermatan Sulfates contains iduronic acid as main uronic acid Skin, Blood Vessel, Heart valve -GAGs have strong negative charge from carboxyl and sulfate groups. They bind large amounts of water,
producing a gel-like matrix part of the ECM, and react to compression with squeezing water out and to
relaxation by absorbing water.
Heparan Sulfates contains sulfated glucuronic acid and basement membranes or on cell- -Functions of GAGs: Flexible support of the ECM, molecular sieve, lubricant, shock absorber
iduronic acid cell surfaces used for cell-cell
recognition
Heparin contains mainly iduronyl sulfates and is contained in mast cells that line
the GAG with largest amount of sulfates artieries of the lung, liver, and
and negative charges spleen. It's released from
intracellular granules and acts as
an anticoagulant by ending blood
clotthing via. facilitating inhibition
of thrombin
Hyaluronic Acid not sulfated, not covalently attached to a vitreous humor of the eye,
protein, contains glucuronic acid, synovial fluid of joints, cartilage,
synthesized in the extracellular space, loose connective tissues
provides extracellularly the central strand
in proteoglycan aggregates, connected to
core proteins via. link proteins, facilitates
embryogenesis (neural tube closure,
morphogenesis, and wound repair
Transcription Factor Cis Element it Binds Inactive state Active state Coactivators/Repressors?
Hypoxia Inducible Hypoxia Response Element (HRE) Oxygen is present and binds to No/low oxygen, N/A
Factor the PEST amino acid sequence on HIFa stabilized,
the HIF1a, proline residue gets moves to nucleus
hydroxylated by prolyl and dimerizes with
hydroylase, HIF1a gets HIF1b to activate
polyubiquinated and is quickly genes that increase
degraded by proteasome. HIF1a oxygen delivery to
therefore not able to dimerize tissues / energy
with HIF1b --> NO EXPRESSION supply via
OF GENES glycoylsis
Glucocorticoid Receptor Hormone Response Element (HRE) No cortisol, GR hangs out in the Cortisol present, Coactivator - help
(Zinc finger) cytoplasm bound to a multi- binds to GR, GR upregulate expression of
protein complex dissociates from genes Repressors -
protein complex, repress transcription
forms a dimer,
moves to the
nucleus, binds to
HRE, induces
expression of target
genes
Myc/Max regulates transcription of genes In the absence of Myc, Max forms In the presence of Nah But MYC
involved in cell cycle progression . a homodimer and represses gene Myc, Max and Myx Overexpression: impairs
transcription. In non-proliferating form a heterodimer, differentiation and
cells, Myc is not expressed. binds to enhancer promotes cell proliferation
site, and allows - which is a step in the
transcription + cell progression of cancer.
proliferation. (Myx regulates about
~15% of genes)
purine synthesis
① Purine Nucleotide
-
denar
synthesis -
}
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of-ormy.tl#ydrofo-ate(THF)deriredfromfolicacid
-
FB
form the
sequentially to
purine ring
.
:
datwimostehemyenpto.sepn.ie
bolismfnaninbditors
Eoemyltetrahy )
shunt or HMP shunt )
D
synthetase Sguufffoanadmmigdll
pppp " " ② PRPP.ca/alyzedriaPRPP
synthetase
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A NADPH t Ht
regulator }
respectively .
Dihydro folate
purine synthesis
.
↳ ensures
that cellular C ATP ] -
Corp ] ①
reductase
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⑥
pnosaphmpmegtiagnpvgakjnaseimgone ;ffp⇒ .
t
Methotrexate :
Dihyd%f
hoprim
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ji;ia!;,cn÷¥÷
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.
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folate
.
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i
)
, cand N atoms are -0
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reductase
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sequentially i added
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-
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.
used urine synthesis tweets
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GuanosineMmophosph
r hematoid
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( Gmp )
.
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sicdeef effects rapidly
%
④ :
on
I
cells which affects
dividing
kinase " "
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.
, .
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( ADP ) I I
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kinase ,
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conversionoftonuceotikstodoxyribonucleotides-lhioreodf.la?eYd
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t
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:
urea
Guanine
FrelpurihlBAL-Aden.me .
Hypoxanthine : prpp
PRPP .
Hypoxanthine
:(
. .
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immanent
IIHF
↳ |qy
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r 's ' tom
:
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> pp ,
mp
Guanine
Monophosphate
Monophosphak ( • )
.tn?oKIYaomd:(at*esn.yenosn(Ywaan#nIEEym
) CAMP
•
bases are converted to the Purim Absent HGPRT activity
Free purinl
•
↳
of to form
reused : increased degradation purines
bases ¢
nucleotides by this pathway
.
,
purine
•
UR "AaD '
of cellular DNA
↳
freebases derived from hydrolysis •
f levels of PRPP stimulate amidotrahslerdse ( feed .
s/p
all death and RNA ( all turnover ) .
biosynthesis of
purines
nucleotides
↳ n
80% of bases = reused !
•
symptoms
: •
hyperuriamia ( uric acid crystals in
urine
disturbances ( self mutilation →
iebitingoflips fingers
Salvage pathway behavioral +
the
-
•
•
monosodium
important for the
Brain !
-
salvage pathway
u@Aad•@-(Xahthimf
uses and treatment
,
.
-
Nucleic Acid Nucleic Acid
ttyperuamatg
G@ Got
Symptoms
:
actively swollen small
joints ,
accompanying pain } warmth ,
crystals
5. nudeotidase unable to bear weight on joint
'
nudeotidase 5
.
omutationsofPRppsynthetasegenl.resuHingin4levelsofPRPP.HyPoxanth@ynine0.aeaaoepnrgpPoafsIatpurfaeasrYharndynaangtiratorofamidotmnsarase.0chemothempy-9Hofalldeatht9DNAtRNAbreaKdown.X
↳
A@--@p
uratedepositsinjointstsofttissue@Puri_mDegred_atonPathwayftErrmationofuricacidlHyperuriamiqdiseases.ca
bimkmnasmo.H@uanbeamotsideorienatnttgupdreaspniaraottonmdaemYnoayeoapnmoenxogomdinuamntoa.e
Purine -lHyperuric_a
Caused
in the
synovial fluid .
fmospnmiase
urine
Nucleoside nucleoside
nospnomiase
oafeimatiyrsotmuar.IT#jeYndjopathid
anthinetx
×an+mm*
M
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isauannma
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oxidase *
Treatment
:
and anti ( )
ttcueepisode dchicine inflammatory agents Nsaibhcortisd
.
f
:c
ctxonxfhfntshinmldgxbidhffuem
chronittyperuriumia :
allopurioloxahthiheoxidase inhibitor
; defamation of
acid
:
Atopurihol uric
.
ostmctuml analogue of
hypoxanthine
Irreversibly hibits
.
Xahthine oxidase .
oconvertstooxypurinolcalloxahtinejandisa
irreversible competitive inhibitor
xahthineinurine
.
non
hypoxanthine
.
+
→ increases
acid formation Febnxiatixanthineoxidaeinhibitr
.
decreases uric
.
Plrobenecid
:
P excretion ofuricacidfisedinnnderexcretors )
Diary of meat
( of
purines ) and
:
alcohol .
Inherited Disorders of Purim
-
Degradation
Adenosine Deaminase Deficiency ( ADA SCID )
Purine Nucleoside Phosphatase Deficiency .
=
°
children severe
OADA
deficiency mainly affects
lymphocytes immunodeficiency involving T cells
.
symptoms
:
recurrent infections
0 accumulation results in increased DATP
°
inhibition of ribo nucleotide reductase leads to
and B all
of T immunity .
symptoms
:
o persistent infections
levels of
remarkably low serum
°
immuno globins .
Treatment
:
o bone marrow replacement or
enzyme
replacement
where
gene therapy
successful
first disorder was
0 .
pyrimidine synthesis
amino-acid and Cozlinthelormof bicarbonate
aspartate , glutamate )
:
Precursory :
,
hydiofoate
methylene
④ unlike synthesis the assembled
purine , pyrimidine ring
is first and the ribose phosphate is added later .
t
Glutamine phosphate
:bpYnma-e£%%f→BDihydqr
Synthetase I
teach
① to
:K÷
I
\
acarbe
pg
Grotty
I
ATP
,
I
L activators ) biosynthesis
.
'
i :*:
PRPP.ypur.me/pyrimidine
ai
:* :*
it:
Feedback
I ptoYypesfffdecha.in ( OPRT ) ↳ .
Inhibition I
( ump synthase)
I
(orotak°mMoPophosph
I
-④p←ump@
OMP
I
!
:
CFP
DVDP
synthetics Thymidine Synthesis
:
T
via
- -
.
! might methotrexate
:p
lA¥,c⑨ My¥
cytidine triphosphate
.
Dihydwf
! to
:* .
I
.
1
:
✓
yqdVMP.in#yaoesynthtasedTggMPO
.
.
:
.
: I .
.
.
.
.
yd.ro#aause-o-'
. I
.
. .
.
,
④ 5 Fluorouracil :
area
aµp,aµp,a,,,p,dqj#
✓ Hydroxy canonariiiedeiiibiytiuiousmaoldmr
| µ thsmiisdlcafuhn.ae
gig
Ribonucleotide
Dna ,ynµ , ,,µµ , ,a+ , ,
thioredoxin
Thinoraedpoxincreduad
essential in diet
°
formyl THF / methylene THF needed in
Purim +
pyrimidine synthesis .
Inherited -Defects in
pyrimidine -
nucleotide synthesis -
OroticA=da
Moddlficiehcy
:
9 levels of orotic acid excretion { of OPRT OMP decarboxylase ( synthase)
or
UMP
tianya.sn?YaTroiaItIamimIaiohbYaosYnlInYmIafdimoEYIaacebaYkYmImllbimaIIYardonma:mnoasmaai:taonnttetyaeaa
Atenolol β1 selective slow heart rate and decrease β1 selective antagonist hypertensive patients with selectivity of β blockers for β1 is modest;
myocardial contractility impaired pulmonary function therefore they should be avoided entirely
and in patients who are (if possible) in patients with asthma
diabetic and hypertensive
Pindolol β non-selective slow heart rate and decrease partial β agonist (so preffered in individuals with
myocardial contractility (β1 acts as competitve diminished cardiac reserve or
effect), decreased reversible antagonist) a propensity to bradycardia
glycogenolysis (β2 effect),
decreased glucagon secretion
(β2 effect)
Disease Karyotype Genetic Causes Characteristics/Symptoms DIagnosis Notes
Down Syndrome (Trisomy 21) 47, X(X/Y), +21 Nondisjunction during Intellectual disability, Rapid FISH probe (3 probe Some can be mosaics
meiosis, robertsonian cognitive delay, short stature, signals for chromosome for trisomy 21. Risk
translocation depressed nasal bridge, 21), Standard G-band increases with maternal
upslanting palebral fissues, Karyotyping age
epicanthal folds, congenital
heart defects, develop
changes similar to alzheimers
at a young age (because one
of the genetic factors
responsible for Alzheimers
localized to chromosome 21)
Patau Syndrome (Trisomy 13) 47, X(X/Y), +13 Nondisjunction during Polydactyly, cleft lip + palate, Rapid FISH (3 signals for
oogenesis intellectual disability, cardiac chromosome 13), Standard
abnormalities G-band karyotyping
Edward's Syndrom (Trisomy 18) 47, X(X/Y), +18 Nondisjunction during Microcephaly, intellectual Rapid FISH probe (3 probe Can vary in severity
oogenesis disability, clenched fist, signals for chromosome
overlapping fingers, rocker 18), standard G-band
bottom feet, congenital heart karyotyping
defects, lower set ears, small
lower jaw (micrognathia)
Turner Syndrome 45, X Monosomy x due to Most = normal intelligence, FISH, G-Band, cells with Mosacism can be seen,
nondisjunction during short stature, webbed neck, 45x have no barr body most girls aren't
spermatogenesis cystic hygroma (neck diagnosed until puberty
swelling), primary
amenorrhea, no development
of sexual characteristics,
gonadal dysgenesis,
degeneration of ovaries,
infertile, constriction of aorta
Kleinfelter Syndrome 47, XXY nondisjunction during phenotypically male, FISH probe for X Some individuals can be
meiosis gynecomastia, female chromosome, G-band mosaic, presence of barr
distribution of hair, infertility body will be observed in
and testicular atrophy due to buccal mucosal cells,
low levels of testosterone, many males aren't
feminization of features diagnosed early and get
dx when trying to
conceive
Cri-du Chat Syndrome microdeletion of high pitched, cat-like cry, Karyotype, rapid FISH,
chromsome 5p micrognathia, severe microarray CGH
intellectual disability,
hypertelorism (widely spaced
eyes), microcephaly
Di-George Syndrome (22q11.2 deletion microdeletion of congenital heart defects, Microarray CGH, FISH most common
syndrome) chromosome 22 absence of thymus, contiguous gene
immunological problems, cleft disorder in humans
lip + palate, learning
disability, facial abnormalities,
long midface, narrow
palpebral fissures, prominent
nasal root, bulbus nasal tip,
ear dysmorphology,
increased risk for
schizophrenia
Wolf-Hirschorn Syndrome microdeletion of seizures, skeletal microarray CGH
chromosome 4p abnormalities and congenital
heart defects, sepctrum of
intellectual and
developmental delay, facial
anomalies, widely spaced
eyes, high arched eyebrows,
broad and flat nasal bridge,
short philtrum, downturned
mouth, small chin
Prader Willy Syndrome either microdeletion in insatiable hunger honestly should know
paternal SNRPN gene or this by now
uniparental maternal
disomy (trisomy rescue)
Angelman Syndrome either microdeletion in happy-puppet honestly should know
maternal UBE3A gene or this by now
uniparental paternal
disomy (trisomy rescue)
Cancer Mutation / genetic abnormality Normal Function of Protein / Gene Mutated Protein pathway Notes
Retinoblastoma Mutation of genes that regulate Rb is a regulator of G1/S phase Loss of Rb function due to In Familial Rb: Autosomal Dominant
phosphorylation of Rb. Can be transition. At the checkpoint, Rb is mutation Rb - nothing binds Inheritance pattern, but displays
any of the four: Rb, CDK4, Cyclin hyperphosphorylated by to E2F and there is an recessiveness at the level of the
D gene, CDKN2A (p16). Mutation Cyclin/CDKs and dissociates from increase in transcription of S tumor. Inheritance of "one hit,"
can occur due to either E2F. E2F then activates S-phase phase genes, leading to therefore when "second hit" occurs,
spontaneous deletion or point genes and allows cell cycle increased cell cycle there is a loss of heterozygosity.
mutation. progression. In the absence of progression and unregulated Familial Rb presents with multiple
cyclin/CDKs, Rb is cell division. tumors, bilateral, early age of onset.
hypophosphorylated and binds to Non-Familial/Sporadic Rb: Two
E2F. Rb/E2F complex binds DNA incidences of somatic mutations need
and prevents replication by to occur (two hits) in order for cancer
recruiting HDAC and Histone to occur. Usually single tumors,
methylase. unilateral, later onset of age.
Li-Fraumeni Syndrome Inherited mutation in p53. Tumor suppressor gene that drives loss of p52 function results
expression of pro-apoptotic BLC1 in net cell growth and
family members (such as Bax) and increased mutation
inhibits cell cycle progression in the frequency, which drives
presence of DNA damage. cancer progression
IMPORTANT: MOST OF THE BCL2
FAMILY IS ANTI-APOPTOTIC BUT
BECAUSE BAX IS STILL A PART
OF THE BCL-2 FAMILY, YOU
STILL HAVE TO RECOGNIZE
THAT BCL1 BEING PRO-
APOPTOTIC IS CORRECT!
Familial Adenomatous Polyposis Mutation in APC pathway (APC = In the presence of WNT, B-catenin When there is a mutation in Symptoms: 100s of polyps in distal
(Colorectal Colon Cancer) component of WNT signalling moves to the nucleus and forms a APC, there is no APC colon
pathway) complex with TCF-4 and activates interaction with B-catenin.
cell growth promoting genes. In the So even in the absence of
absence of WNT, APC interacts to WNT, B-catenin binds with
B-catenin, phosphorylates B- TCF-4 and activates cell-
catenin, B-catenin is ubiquinated, growth genes.
degraded, and B-catenin levels fall
and there is no cell growth
promoting genes being activated.
Hereditary Non-polyposis colon Mutation in DNA mis-match MSH2/MSH1 are mismatch repair mutations in these genes Tumors exhibit Microsatellite
cancer (a.k.a. Lynch Syndrome) repair genes (MMR genes) genes - there are at least 5 genes can cause accumulation of Instability: Only seen in Lynch
/caretaker genes AND/OR mutation. these genes are Syndrome - short repetitive
microsatellite instability not directly involved in sequences of DNA near centromeres
control of cell division - - tandem repeats 2-4bp in length.
called mutator genes. Cells
can accumulate mutation at
rates of up to 1000x higher
than normal. Mutations in 5
different genes can cause
cancer - locus heterogeneity.
Burkitt's Lymphoma Translocation between Myc normally dimerizes with Max Once translocation occurs,
chromosomes 8 and 14. Myc (forms heterodimer) in order to Myc becomes overexpressed
oncogene is fused to highly active promote cell cycle progression from due to its translocation
immunoglobin promoter. G1-S. In the absence of Myc, Max downstream of the highly
forms a homodimer with another active immunoglobin H
Max and binds to DNA and inhibits promoter.
cell cycle progression.
Chronic Myeloid Leukemia Translocation between On Chr. 22 Breakpoint Cluster Translocation forms hybrid TREAMENT: Imatinib: Powerful
chromosomes 9 and 22; Region (BCR), on Chromosome 9, BCR-ABL fusion oncogene. tyrosine kinase inhibitor specific for
formation of the philadelphia Abl =cytoplasmic tyrosine kinase It's basically a super tyrosine super tyrosine kinases such as BCR-
chromosome. kinase that's constitutively ABL. It binds to active site of BCR-
active (Abl stuck in its active ABL and prevents its activity.
form) - promotes cell
growth/proliferation.
Breast Cancer/Ovarian Cancer BRCA1/BRCA2 genes Normally involved in DNA repair Loss of BRCA1/2 - cells can TREATMENT: (only in HER2 Positive
duplicate with DNA damage tumors): In sporadic/nonfamilial
which predisposes them to breast cancers, there is an
cancer amplification of HER2 (either via
double minutes of hsrs). HER2 is
human epidermal growth factor
receptor 2. When there is
overexpression of this receptor, it
binds growth factors and induces cell
growth/proliferation. Herceptin, (a.k.a.
trastazumab) are HER2 antibodies
that attack HER2 and prevent binding
of growth factors.
Disease How it Manifests / Genetic Dysfunction Symptoms
Ehlers-Danlos Syndromes (classical form) defect in type V collagen hypermobility of the joints, hyperextensibility of
the skin
Ehlers-Danlos Syndromes (vascular form) defect in type III collagen leads to fragility of skin and vessel walls, most
severe form because it's associated with
potentially lethal arterial rupture
Osteogenesis Imperfecta Type I One allele of either COL1A1 or COL1A2 gene, leads to early childhood long bone fractures after minor
displacement of clycine in bone collagen type 1 cauing trauma, normal/near normal height, possibility of
unstable collagen triple helix hearing loss in adulthood, blue sclerae
Osteogenesis Imperfecta Type II (a.k.a. One allele of either COL1A1 or COL1A2 gene, leads to usually leads to death in utero or neonatal death
osteogenesis imperfecta congenita) displacement of clycine in bone collagen type 1 cauing due to respiratory problems, can lead to
unstable collagen triple helix underdeveloped lungs and an abnormally small +
fragile rib cage
Marfan Syndrome defect in fibrillin 1 gene (gene for elastin is normal) - long limbs, aortic root dilation, arachnodactyly,
fibrillin acts as a scaffold for tropo-elastin. lens dislocation, abnormal formation of rib cage
Kwashiorkor severe protein deficiency (adequate calories via carbs) often older than a child with marasmus, decifiency
of dietary protein and dietary essential amino
acids, decreased blood albumin (<2.8g/dL)
resulting in edema of abdomen (ascites & legs),
stunted grwoth, skin lesions, reddish hair,
anorexia, fatty liver, bilateral pitting edema
Marasmus Severe undernourishment with deficiency in almost all arrested grwoth, anemia, extreme tissue and
nutrients: carbs, proteins, lipis, etc... muscle wasting, loss of subcutaneous
fat/emaciation, loose skin folds hanging over
buttocks and thighs. can also result from chronic
illnesses, trauma, anorexia, and can also be found
in the elderly
Cystic Fibrosis Lots of different mutations but most common one is delta salty skin (KNOW WHY CF PTS HAVE SALTY
F508 - deletion of phenylalanine in CFTR (3 bp deletion), SKIN), chronic respiratory infections, steatorrhea,
does not reach cell membrane, ubiquinated and degraded poor growth, etc....
via proteasomes.
Myasthenia Gravis autoimmune attack on acetylcholine receptors, leads to increasing fatigue throughout the day, drooping
imparied transmission of nerve impulses of eyelid, laziness of muscles, DX: edrophonium,
TX: pyridostigmine
Guillain-Barre Post-infectious peripheral neuropathy - damage to ascending muscle - loss of muscle coordination
schwann cells, demyelination of peripheral nerve fibers. and cutaneous sensation
accumulation of lymphocytes, macrophages, and plasma
cells
Multiple Sclerosis Autoimmune. Selective loss of myelin sheath with axon weakness, fatigue, muscle spasms, balance
preservation in the CNS. Multiple sites of demyelination problems, dizziness, vision problems. tingling and
occuring in CNS. Preferential damage to myelin - detach numbness
from axon and destroyed. Damage to oligodendricytes -
microglia cells aren't as efficient in removing myelin debris,
which reduces likelihood of regeneration
I-Cell DIsease Lysosomal storage disorder - defective Coarse facial features, skeletal abnormalities, and
phosphotransferase in the golgi-apparatus. Mannose 6 mental disability, elevated plasma lysosomal
phosphate not properly phosphorylated and cannot be enzyme concentration (because they're being
targeted to lysosomes within the cell. Proteins are secreted extracellularly instead of being directed
therefore excreted outside the cell. Lysosomes cannot to lysosomes).
function without these proteins (can't break down
oligosaccharides, lipids, and GAGs) and buildup of these
molecules occurs in lysosomes resulting in inclusion cells
(hence I-cells).