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DOI: 10.1002/JLB.

MR0318-096R

REVIEW

Understanding early TLR signaling through the Myddosome

Katherine R. Balka1 Dominic De Nardo1,2

1 Inflammation Division, The Walter and Eliza

Hall Institute of Medical Research, Parkville, Abstract


Victoria, Australia TLRs are expressed on the plasma and endosomal membranes of innate immune cells acting as
2 Department of Medical Biology, The University
sensors of foreign and inherent danger signals that threaten the host. Upon activation, TLRs facil-
of Melbourne, Parkville, Victoria, Australia itate the assembly of large intracellular oligomeric signaling complexes, termed Myddosomes,
Correspondence which initiate key signal transduction pathways to elicit critical inflammatory immune responses.
Dr. Dominic De Nardo, Inflammation Division,
The Walter and Eliza Hall Institute of Medical
The formation of the Myddosome is integral for TLR signaling; however, the molecular mecha-
Research, 1G Royal Parade, Parkville, Victoria, nisms controlling its formation, disassembly, and the subsequent proximal signaling events remain
3052, Australia. to be clearly defined. In this review, we present a brief overview of TLR signal transduction path-
E-mail: denardo.d@wehi.edu.au
ways, summarize the current understanding of the Myddosome and the proteins that comprise
its structure, including MyD88 and members of the IL-1 receptor-associated kinase (IRAK) family.
Finally, we will discuss recent advances and open questions regarding early TLR signaling in the
context of the Myddosome complex.

KEYWORDS
innate immunity, IRAK, MyD88, Myddosome, TLRs

1 AN OVERVIEW OF TLR SIGNALING plasma membrane (TLR1, 2, 4-6, and 10) recognize components of bac-
teria and fungi, whereas those located on endolysosomal membranes
The TLRs are a family of pattern recognition receptors (PRRs) critical (TLR3, 4, 7-9, and 11-13) detect viral nucleic acids (Fig. 2).6 A com-
for host defense against invading pathogens. The TLRs encompasses a prehensive list of known TLR ligands can be found elsewhere.7,8 Sig-
broad class of PRRs with 10 TLRs expressed in humans (TLR1-10), and naling downstream of TLRs is facilitated by conformational changes in
12 in mice (TLR1-9, 11-13) that recognize a diverse range of microbial their intracellular TIR domains induced following ligand binding, which
and host-derived ligands. Mammalian TLRs were named due to their leads to recruitment of adaptor proteins that bind to the cytoplasmic
similarity to the Toll protein from Drosophila, which was originally iden- region of TLRs via homotypic TIR-TIR interactions. Currently, 5 TLR
tified in fly embryonic development.1 However, Toll was subsequently adaptor proteins are known to form these interactions: Myeloid differ-
shown to be critical for Drosophila immune defense against fungi and entiation factor 88 (MyD88), TIR-domain containing adaptor molecule
bacteria via induction of pathways homologous with those activating (TRIF), MyD88-adaptor-like (MAL, also known as TIR domain contain-
the mammalian transcription factor NF-𝜅B.2–4 Both Toll and the verte- ing adaptor protein [TIRAP]), TRIF-related adaptor molecule (TRAM),
brate TLRs share common structural domains: an amino (N)-terminal and sterile 𝛼- and armadillo-motif-containing protein (SARM).9 Gener-
extracellular domain consisting of multiple leucine-rich repeat (LRR) ally, TLRs transduce signals via 2 major pathways dependent primar-
regions, which facilitate ligand recognition; a single transmembrane ily on the adaptors MyD88 or TRIF. MyD88 signaling predominantly
(TM) domain; and a carboxyl (C)-terminal intracellular Toll/IL-1 recep- leads to the production of inflammatory cytokines (e.g., TNF, IL-6, IL-
tor (TIR) domain, which acts as a platform for the recruitment of down- 1) and chemokines (e.g., C-C motif ligand 4, CCL4), whereas the TRIF
stream signaling molecules (Fig. 1).5 Interestingly, as TLRs and the IL- axis mainly induces the expression of type I IFNs (e.g., IFN𝛼/𝛽) (Fig.
1 receptor (IL-1R) both express TIR domains, the signaling cascades 2).7 Whereas TLR3 signals exclusively via the TRIF axis,10 all other
downstream of these receptors are thought to be comparable. Indeed, TLRs transduce signaling via a MyD88-dependent mechanism. Among
much of the fields understanding of TLR signaling originated from stud- the family members, TLR4 is unique in terms of its adaptor usage
ies focusing on signaling downstream of the IL-1R. and translocation. TLR4 signals primarily from the plasma membrane
TLRs can be roughly classified based on their subcellular local- through MyD88 to activate a strong cytokine response but is subse-
ization to either the plasma membrane or membranes within acidi- quently internalized into endosomes where it leads to type I IFN pro-
fied endolysosomal compartments.6 In general, TLRs localized to the duction via TRIF-dependent signaling, albeit to a lesser extent.11

Received: 23 May 2018 Revised: 27 August 2018 Accepted: 6 September 2018


J Leukoc Biol. 2019;105:339–351. www.jleukbio.org 2018
c Society for Leukocyte Biology 339
340 BALKA AND DE NARDO

LRR domains

TM TM

TIR domains

MyD88 2 x MyD88 DDs

IRAK4
KD 4 x MyD88 DDs
KD
IRAK1/2

4 x IRAK4 DDs

4 x IRAK1/2 DDs

N C
TLR LRR domain TM domain TIR domain
PIP2 binding motif
MAL TIR domain
1 15 35 84 235

MyD88 Death domain TIR domain


1 110 155 296

IRAK4 Death domain Kinase domain


1 95 166 460
TRAF6 binding motifs
IRAK1 Death domain Kinase domain
1 103 198 522 712
TRAF6 binding motifs
IRAK2 Death domain Kinase domain
1 94 196 489 590

F I G U R E 1 Formation of the Myddosome complex by homotypic domain interactions. TLR receptors contain an extracellular leucine-rich repeat
(LRR) domain (shown in blue), a transmembrane (TM) domain (shown in purple) and cytosolic Toll/IL-1R (TIR) domain (shown in green). Following
TLR activation molecules of MyD88 (green shadow), a 296 amino acid protein is recruited to dimeric TLR-TIRs via homotypic TIR domain inter-
actions. Only 2 MyD88 TIR domains are shown for simplicity. The adaptor MAL (not shown) which is required for signaling by a subset of TLRs,
contains a phosphoinositide (PIP2) binding region, allowing MAL to interact with the plasma membrane. Six MyD88 DDs (DD shown in orange)
arranged in 2 rings provides a platform for the recruitment of 2 subsequent layers of 4 IRAK4 and 4 IRAK1/2 DDs, forming the complete Myddo-
some complex. A representation of 1 kinase domain (KD) for IRAK4 (yellow shadow) and IRAK1/2 (red shadow) shows the close proximity of these
kinases in the complex. The C-terminal regions of IRAK1 and IRAK2 contain putative binding motifs (shown in yellow/black) for the recruitment of
TRAF6 and the activation of downstream signaling events

1.1 Pathways downstream of MyD88 IL-1R-associated kinase (IRAK) family to be further recruited to the
receptor complex (Fig. 1).9 This hetero-oligomeric structure compris-
In addition to its TIR domain, which allows recruitment to TLRs fol-
ing molecules of MyD88 and several IRAK members, termed the
lowing their activation, MyD88 also contains an N-terminal death
Myddosome, will be discussed in more detail below. Initially, IRAK4
domain (DD), allowing members of the DD containing serine/threonine
BALKA AND DE NARDO 341

TLR1/2 or TLR 2/6 TLR5 TLR4

Extracellular space

MAL MAL
MyD88
Cytosol
TLR4
IRAK4
IRAK1/2
Endosomes
TLR7 TLR9 TLR3
TRAM
TLR8
TRIF

TRAF6
MAL

TRIF
MyD88 TRAF6
IRAK4
IRAK1/2

TAB2
RIPK1
TAK1 TAB3
TRAF3

IKKα
MAPKs IKKβ NEMO
TBK1
Ub
IRF5 IκBα
AP-1 CREB p65 p50

IRF3

NFκB
AP-1 CREB
p65 p50

IRF5 IRF3

Nucleus

F I G U R E 2 The TLR signaling pathways. TLRs are located on either plasma or endolysosomal membranes where they detect pathogen associated
molecular patterns (PAMPs). Signaling downstream of TLRs is mediated by 2 main adaptor proteins; the MyD88- and/or TRIF-dependent path-
ways. The recruitment of MyD88 to the TIR domain of TLRs induces IRAK4 and IRAK1/2 binding to form the Myddosome. Activation of TRAF6
downstream of MyD88 leads to the activation of NF-𝜅B, IRF5, and the MAPK pathways, inducing the expression of proinflammatory cytokines.
Association of TRIF with TLR3 and internalized TLR4 also leads to expression of proinflammatory cytokines via TRAF6 and RIPK1. TRAF3 also
mediates the expression of type I IFNs following activation of the IFN regulatory factors (IRFs)

is recruited to MyD88 and activated by autophosphorylation of its the TAK1 complex leading to activation of the transcription fac-
central kinase domain (KD), which is thought to then allow for acti- tors activator protein-1 (AP-1) and CREB. Third, TRAF6 facilitates
vation of both IRAK1 and IRAK2. Formation of this signaling plat- activation of IFN regulatory factor 5 (IRF5)12 via a TAK1-IKK-𝛽
form then induces association and activation of the E3 ubiquitin axis.13,14 The activation and cooperative binding of these transcrip-
(Ub) ligase TNF receptor-associated factor 6 (TRAF6), which simul- tion factors to specific gene promoters culminates in production of
taneously triggers 3 major transduction pathways culminating in the potent proinflammatory cytokines and chemokines that elicit an acute
activation of several critical transcription factors (Fig. 2). Follow- inflammatory response. Of note, in plasmacytoid dendritic cells (pDCs)
ing its activation TRAF6 complexes with the TAK1 complex com- exclusively, MyD88 also induces the expression of type I IFNs via
prising TGF-𝛽 activated kinase 1 (TAK1), TAK1-binding protein 1 IRAK4/IRAK1-mediated activation of the transcription factor IRF7 in
(TAB1), and TAB2/3, stimulating activation of the I𝜅B kinase (IKK) response to TLR7 and TLR9 activation.15–17
complex comprising IKK-𝛼, IKK-𝛽, and NF-𝜅B essential modulator The TIR-adaptor MAL is required for a subset of MyD88-dependent
(NEMO, also known as IKK-𝛾). This facilitates the phosphorylation TLRs (TLR2, TLR4, and TLR9) by facilitating the recruitment of MyD88
and degradation of the inhibitor of NF-𝜅B (I𝜅B𝛼), allowing canoni- to the plasma or endolysosomal membrane by an N-terminal phos-
cal NF-𝜅B (comprising subunits p50 and p65) to translocate to the phatidylinositol (4,5) bisphosphate (PIP2) binding motif (Fig. 1).11,18–21
nucleus. Second, the MAPK pathways are induced downstream of Additionally, MAL contains large acidic regions on its surface that are
342 BALKA AND DE NARDO

able to interact with the predominantly basic surfaces of MyD88- TIR domains to allow recruitment of TIR adaptor proteins.29 The BB
TIR and TLR4-TIR forming a bridge between these molecules.22 A loop of the TIR domain, “so called as it” connects the second 𝛽 strand
single nucleotide polymorphism within the acidic region of MAL (𝛽B) to the second 𝛼-helix (𝛼B) contains the box 2 motif and is impor-
(D96N) leads to loss of MyD88 interaction and impaired cytokine tant for interactions between adjacent TIR domains. The C3H/HeJ
responses of TLR4 and TLR1/2.22,23 Interestingly, however, addition mouse strain, vulnerable to Gram-negative bacteria infection and
of a PIP2 binding motif to MyD88 restores signaling in the absence of resistant to LPS, was found to have a proline to histidine mutation at
MAL, suggesting that MAL may merely be required to facilitate move- position 712 (P712H) in exon 3 of the Tlr4 gene within the BB loop
ment of MyD88 to membranes.20 box 2 motif.30,31 Discovery of this mutation not only uncovered TLR4
as the genuine signaling receptor for LPS but further identified the
BB loop as a key region within the TIR domain structure required for
1.2 Pathways downstream of TRIF downstream signaling. All MyD88-dependent TLRs similarly share a
Aside from MyD88-dependent signal transduction, TLR3 and TLR4 conserved proline residue in this BB loop. Mutation of the analogous
also induce a type I IFN transcriptional response from endosomes proline residues in TLR2 (P681)32 and TLR10 (P674)33 prevents inter-
following recruitment of the adaptor TRIF to their respective TIR action with MyD88 and impairs NF-𝜅B reporter activity, suggesting
domains (Fig. 2).24 Whereas TLR3 can directly associate with TRIF, that conservation of this proline within the TIR domain is a critical
TLR4 requires the bridging adaptor TRAM to facilitate this receptor- feature. The crystal structure of a TLR10 homodimer showed that
adaptor interaction.25 The major pathway triggered downstream of this BB loop formed the interface region connecting the 2 TIR domain
TLR3-TRIF is via recruitment of the E3 Ub ligase TRAF3, which inter- monomers.27 Interestingly, TLR3, the only MyD88-independent TLR,
acts with and activates TRAF family member-associated NF-𝜅B activa- contains an alanine at this site. However, mutation of this alanine
tor (TANK)-binding kinase 1 (TBK1). This leads to phosphorylation and to a proline (A795P) was shown to convert TLR3 from TRIF- to
dimerization of IRF3, which then translocates into the nucleus to medi- MyD88-dependent signaling.34
ate expression of type I IFN genes. A secondary pathway elicited by
the TLR3-TRIF receptor complex is triggered via TRAF6 recruitment,
2.2 MyD88
which interacts with Receptor-interacting serine/threonine-protein
kinase 1 (RIPK1) via their respective RIP homotypic interaction motif MyD88 has a tripartite structure containing an N-terminal DD, an
(RHIM) domains, allowing formation of a Ub scaffold for the assem- intermediate domain (ID), and C-terminal TIR domain (Fig. 1).35
bly of the TAK1 complex, which drives canonical NF-𝜅B activation and MyD88 was initially identified as the adaptor that links IRAK1 to
the MAPK pathways (Fig. 2). Interestingly, maximal IFN-𝛽 expression is the IL-1R following IL-1𝛽 engagement.35,36 MyD88 adaptor function
controlled by a group of transcription factors that bind to positive regu- was then swiftly established in TLR signaling as a link to downstream
latory domains (PRDs) within the IFN-𝛽 promoter region known as the kinases, reflecting the role of the Tube adaptor protein in Drosophila
enhancesome.26 IRF3 dimers (and IRF7 in pDCs) bind to PRD regions I Toll signaling.37,38 Overexpression of wild-type (WT) MyD88 is suf-
and III, whereas NF-𝜅B heterodimers bind to PRDII. The AP-1 complex ficient to drive robust NF-𝜅B luciferase activity.35,36,39 However,
is also required for maximal transcriptional activation via binding to overexpression of the C-terminal region (152-296) containing the
PRDIV. This collective of transcription factors facilitates nucleosome TIR domain exhibits a dominant-negative effect, presumably due to
rearrangement, ultimately leading to maximal IFN-𝛽 transcription. outcompeting WT MyD88 and the inability to recruit downstream
IRAKs.35,36 Key studies using Myd88-deficient mice clearly demon-
strated the requirement of MyD88 for cytokine production induced
downstream of most TLRs,40 IL-1, and IL-18 receptor activation.41
2 THE MAIN PLAYERS IN EARLY Indeed, Myd88-deficient mice are resistant to LPS-induced sepsis and
MYD88-DEPENDENT TLR SIGNALING lethality due to an inability to activate inflammatory cytokines.40
Surprisingly, although delayed and reduced, the activation of NF-𝜅B
This section will focus on the primary protein components and their and MAPK pathways were still intact in macrophages from Myd88-
roles in initiating signal transduction downstream of TLR activation deficient mice following TLR4 activation.40 However, this was subse-
including, the intracellular TIR domains of the receptors themselves, quently explained by the involvement of the TRIF pathway, as signaling
the TIR adaptor MyD88, and the IRAK family of effector kinases. events following LPS treatment were entirely abolished in cells derived
from Myd88/Trif double knockout mice.10

2.1 TLR-TIR domains


2.3 IRAK4 and the role of its kinase activity
The first crystal structures of the TIR domains of TLR1 and TLR2
indicated the prototypical arrangement of 5 𝛽-strands surrounded by IRAK4, the final member of the IRAK family to be described, was
5 𝛼-helices.27 TIR domains also share 3 conserved motifs, (F/Y)DA, identified in 2002 based upon its similarity to IRAK1 in a database
RDXXPG, and FW termed box 1-3, respectively.28 Ligand binding in the search of human complementary DNAs (cDNAs).42 Like IRAK1 and
LRR domain of TLRs is thought to induce conformational changes in IRAK2, IRAK4 contains a central active KD (Fig. 1). IRAK4 was
TLR dimers that consequently alter the orientation of the intracellular shown to directly interact with MyD88 and IRAK1 via homotypic
BALKA AND DE NARDO 343

DD-DD interactions, connecting MyD88 to the downstream effec- moderately affected following TLR activation in the presence of IRAK4
tor kinases and leading to activation of IRAK1.42 IRAK4 was sub- kinase inhibition in human monocytes, IRF5 activation and subsequent
sequently found to be essential for cytokine production following nuclear translocation is inhibited.14 Because the expression of most
activation of MyD88-dependent TLRs and the IL-1R through the gen- cytokine genes requires cooperative binding of both IRF5 and NF-
eration of Irak4-deficient mice.43 Strikingly, like the Myd88-deficient 𝜅B within promoter regions, the loss of activated IRF5 significantly
mice, Irak4 deficiency also protects mice from LPS lethality and sep- reduces cytokine expression.14,57,58 Therefore, it appears the kinase
tic shock by abolishing cytokine responses.43 Of note, multiple human activity of IRAK4 is essential for activation of IRF5, but potentially
patients have also been reported to have mutations in IRAK4 that dispensable for NF-𝜅B and MAPK signaling.
introduce premature STOP codons leading to truncated and inac-
tive forms of IRAK4 protein.44,45 These patients display an IRAK4
2.4 IRAK1 and IRAK2
immunodeficient phenotype where induction of cytokines is com-
pletely abolished downstream of TLR stimulation.44,45 Intriguingly, IRAK1, the first member of the IRAK family to be identified, was
these patients are only susceptible to a specific subset of pyogenic initially described as a kinase recruited to the IL-1R and later found
bacterial infections in early childhood where the mortality rate is to interact with TLRs.59,60 Following TLR or IL-1R stimulation, IRAK1
around 50%.45,46 However, beyond adolescence no deaths have been is rapidly recruited to the receptor complex where it is thought to
reported demonstrating that Myddosome signaling is more critical in become phosphorylated by IRAK4. Irak1-deficient mice and cells show
early life.45 a partial impairment of cytokine production in response to IL-1𝛽 61
Three key publications in 2007 centered around the generation of and LPS,62 presenting an intermediary phenotype compared to those
Irak4 kinase inactive (KI) knock-in mice by mutating lysine residues 213 lacking IRAK4. IRAK2 was initially identified to be similar to IRAK1
and 214 in the ATP binding site to methionine47 and alanine.48,49 These and was shown to induce NF-𝜅B in a dose-dependent manner in
Irak4-KI mice were protected from septic shock caused by high doses reporter assays, though to a lesser extent.35 Subsequently, IRAK2
of LPS or the TLR9 ligand CpG-DNA in a manner similar to Myd88- and was shown to be a pseudokinase requiring activation by IRAK4 due
Irak4- knockout mice.47,48 Like Irak4-deficient cells,43 macrophages to an aspartate to asparagine residue change in its catalytic domain,
isolated from Irak4-KI mice could not induce the phosphorylation of thus inhibiting its autophosphorylation.63 Interestingly, in response
IRAK1 nor produce TNF or IL-6 cytokine following LPS or CpG DNA to TLR stimulation Irak2-deficient mice show a more severe reduction
treatment.47–49 However, when examining signaling in Irak4-KI cells, in cytokine responses compared to Irak1 knockouts.63 Kawagoe et al.
Kim et al. found that the MAPK components p38 and extracellular observed that IRAK1 and IRAK2 are essentially redundant in the early
signal-regulated kinase (ERK) were activated to levels comparable to stages of TLR activation; however, IRAK2 is vital for sustained NF-𝜅B
those from WT cells following TLR activation.47 Conversely, Kawagoe signaling and cytokine production.63 Consequently, the phenotype of
et al. and Koziczak-Holbro et al. found that the MAPK pathway was mice lacking both Irak1 and Irak2 resembles the more severe immun-
entirely dependent on IRAK4 kinase activity downstream of TLR248 odeficiency observed in IRAK4 knockouts.43,63 This is likely explained
and TLR7.49 However, all groups found only a modest defect in the by the presence of TRAF6 binding motifs within the C-terminal tails
degradation of I𝜅B𝛼, and although reduced, NF-𝜅B activation was still of IRAK1 and IRAK2 that are absent in IRAK4 (Fig. 1).64 To account
observable.47,48 More recently, using highly specific IRAK4 inhibitors for potential artificial protein redundancy generated by the use of
2 independent groups also showed that NF-𝜅B and MAPK signaling conventional Irak1 or Irak2 single knockout mice, Philip Cohen and
was mostly intact following TLR1/2, TLR4, and IL-1R activation in colleagues generated 2 separate knock-in mouse strains expressing
the absence of IRAK4 kinase activity in human and mouse myeloid either a KI IRAK1 (D395A) or a mutant IRAK2 (E525A) unable to
cells.50,51 Indeed, an alternative MAPK kinase kinase 3 (MEKK3)- interact with TRAF6.65 Similar to findings from deficient mice, the
dependent (TAK1-independent) pathway has been shown to elicit NF- presence of IRAK1 D395A demonstrated that its kinase activity
𝜅B responses in the absence of IRAK4 kinase activity downstream of was not necessary for expression of cytokine genes in macrophages;
TLR activation.52,53 To add further complexity, it appears that human however, it did confirm its absolute requirement for the production of
and mouse cells may have differing requirements for IRAK4 kinase type I IFNs by pDCs.65 Meanwhile, the use of macrophages expressing
activity and usage of IRAK1 and IRAK2 in MyD88-dependent TLR IRAK2 E525A further demonstrated the importance for an interaction
responses.54 Indeed, responses from IRAK4-deficient human cells are between IRAK2 and TRAF6 for a persistent low-level NF-𝜅B response
not rescued by reconstitution of murine IRAK4 and vice versa.54 to allow for significant levels of proinflammatory cytokine genes in
Moreover, the dependency of IRAK4 kinase activity differs in dis- response to TLR activation.65 Thus importantly, IRAK1 and/or IRAK2
tinct human cell populations. Use of a selective IRAK4 kinase inhibitor act to link the proximal receptor complex to downstream signaling
nicely demonstrated that the kinase activity of IRAK4 is required for pathways through engagement of TRAF6. Whether or not these IRAKs
TLR-induced cytokine secretion from human monocytes, whereas in are simply required to recruit TRAF6 or whether they control its E3
dermal fibroblasts IRAK4 kinase inhibition had no effect on IL-1𝛽- ligase activity remains unclear, although overexpression of IRAK2, but
mediated cytokine production.55 Reconstitution of IRAK4-deficient not IRAK1, has been shown to induce TRAF6 polyubiquitination.66 Of
human fibroblasts with IRAK4-KI (K213A/K214A), also restores note, macrophages derived from a TRAF6 E3 Ub ligase inactive mutant
NF-𝜅B and AP-1 luciferase activity similarly to WT IRAK4.56 Addi- mouse (TRAF6 L74H), demonstrated that the Ub ligase activity of
tionally, whereas NF-𝜅B and MAPK activation is reported to be only TRAF6 appears somewhat dispensable for TLR-induced activation of
344 BALKA AND DE NARDO

NF-𝜅B and the MAPK pathway, but critical for cytokine production.67 for dimerization of IRAK1 suggesting that this region of IRAK1/2 is
These results were comparable to those found in studies examining the important for the interfaces formed in the Myddosome.73–75 The Myd-
kinase activity of IRAK4, which suggests these proteins play significant dosome structure also revealed key residues that facilitate the inter-
scaffolding roles in the Myddosome, independent of their respective face between MyD88-DD and IRAK4-DD including arginine 12 (R12)
enzymatic functions. of IRAK4, which is highly conserved in vertebrate IRAK4.71 Phospho-
rylation of serine 8 within the IRAK4-DD induces a negative charge and
preferentially binds to R12, preventing the binding of R12 to MyD88.76
3 OUR CURRENT UNDERSTANDING OF Importantly, a patient with an arginine to cysteine substitution at posi-
THE MYDDOSOME tion 12 (R12C) of IRAK4 suffered from recurrent pyogenic bacte-
rial infections similar to the IRAK4-deficient patients.45,77 The R12C
The formation of higher-order multiprotein or supramolecular orga- mutation has also further been shown to disrupt IRAK4 interacting
nizing centers (SMOCs) is now recognized as a fundamental event with MyD88 in vitro.50
in multiple innate immune pathways.68 A common feature of these Following recruitment of IRAK4 to MyD88, IRAK4 itself associates
oligomeric signaling platforms is the requirement for molecules con- via both DD-DD and KD-KD interactions to form the ring of 4 IRAK4
taining domains within the DD superfamily that comprises the DD, molecules.71,78 The DD-DD interactions between MyD88 and IRAK4
death effector domain (DED), caspase recruitment domain (CARD), are thought to stabilize the IRAK4-KD interactions as the addition
and pyrin domain (PYD) subfamilies.69 These domains interact via of MyD88 to full length IRAK4 greatly enhances the autophospho-
homotypic interactions to induce large protein platforms. Upon TLR rylation of IRAK4 in solution.78 Formation of an IRAK4-DD layer
or IL-1R activation, formation of a MyD88-IRAK4-IRAK1/2 oligomeric within the Myddosome enriches the local concentration of IRAK4
complex, known as the “Myddosome” is required to initiate down- stimulating its autophosphorylation.78 Mass spectrometry analysis
stream signaling. revealed that IRAK4 is autophosphorylated at 3 key residues within
The term Myddosome was coined by Nick Gay and colleagues in its activation loop; T342, T345, and S346,79 with T345 represent-
2009 following the observation that the DD and ID of MyD88 can form ing the prototypical phosphorylation site.80 Interestingly, the dimer-
higher-order structures when combined with IRAK4-DD in solution ization or oligomerization of IRAK4 appears to be regulated by its
at a ratio of 8:4 or 7:4 MyD88:IRAK4.70 A year later the remarkable phosphorylation state. In solution full length IRAK4 and the IRAK4-
DD crystal structure of the Myddosome complex was elegantly solved KD are able to form dimers when autophosphorylation (as measured
by the group of Hao Wu, revealing a complex comprising six MyD88 by phospho-T345), but is inhibited by mutation of aspartate 311 to
DDs, 4 IRAK4 DDs, and 4 IRAK2 DDs arranged in a left-hand single- asparagine (D311N), a key residue in the catalytic loop required for
stranded helical oligomer.71 More precisely the structure revealed 4 phosphotransfer.78 Similarly, treatment of full length and IRAK4-KD
layers of DDs arranged in rings; 2 MyD88-DDs atop 4 MyD88-DDs with 𝜆-phosphatase induced dimerization of IRAK4, whereas incuba-
followed by 2 rings each comprising the 4 DDs of IRAK4 and IRAK2, tion with ATP and Mg2+ stimulated the autophosphorylation and dis-
respectively (Fig. 1). The Myddosome structure was solved using DDs sociation of IRAK4 into monomers.78 The crystal structure of IRAK4-
from IRAK2, as the authors were unable to be express IRAK1 DDs; KD dimers stabilized by the D311N mutation shows an enzyme-
however, IRAK1 is likely to be recruited first following physiologic TLR substrate arrangement presenting how IRAK4 is activated by inter-
activation. Indeed, sequence alignment of IRAK1 and IRAK2 reveals molecular trans-autophosphorylation.78 The prototypical T345 phos-
that key residues required for IRAK2 assembly within the Myddosome, phorylation site in the activation loop of the “substrate” IRAK4-KD is
such as tryptophan 62 and arginine 67, are conserved in IRAK1.71 positioned within the active site of the “enzyme” IRAK4-KD.78 How-
The DDs complete nearly 4 full revolutions in the helical oligomer, ever, this activation loop region lacks similarity to IRAK1, the sub-
with 3.7 DDs per turn.71 Recently, exquisite imaging from the group strate of IRAK4 and hence additional interactions where high surface
of Clare Bryant was able to capture Myddosome formation in vivo for area are buried in the dimer interface are required to facilitate IRAK4
the first time using live single cell imaging of macrophages expressing autophosphorylation.78 Mutating key residues in these regions such as
GFP-tagged MyD88.72 Upon TLR activation large complexes rapidly R361E, E401K, and K440E reduced the phosphorylation rate of IRAK4,
appeared (within just 3 minutes), which correlated to the 6 MyD88 affected signaling events and reduced expression of the downstream
molecules in the crystal structure.72 The Myddosome is thought to cytokines TNF and IL-8.78
assemble in a hierarchic manner where a MyD88 homo-oligomer is
seeded by TLR-TIR dimers, forming a DD platform for IRAK4 associ-
ation, which then provides a platform for recruitment of IRAK1/2 DDs. 4 OPEN QUESTIONS IN THE FIELD
This sequential model of oligomerization is supported by the observa-
tion that DDs of IRAK2 only form stable complexes with complexed The requirement for Myddosome formation to license TLR signal
MyD88-IRAK4 DDs and not with the single DDs of either MyD88 or transduction is now an accepted concept in the field; however, a num-
IRAK4. Furthermore, the ring of IRAK4 molecules in the Myddosome ber of fundamental questions remain unresolved. Here we will discuss
structure has a high charge complementarity for IRAK2 supporting some of the open questions relating to Myddosome formation, local-
sequential recruitment.71 Threonine 66 of IRAK1 is highly conserved ization, disassembly, and the triggering of early signaling events that
(i.e., Threonine 57 in IRAK2) and has also been shown to be important dictate TLR responses (Fig. 3).
BALKA AND DE NARDO 345

High PIP2
concentration

MAL
MyD88 C
IRAK4
IRAK1/2
Destabilized
B Myddosome
A
Low PIP2 P
P P
concentration P
WT MyD88 MyD88 L265P
Loss of MAL
**
***

Signal transduction

F I G U R E 3 Open questions surrounding the Myddosome. (A): The possibility exists that active Myddosome complexes can signal from the
cytosol, uncoupled from TLR-TIR domains. This concept is supported by studies with the B cell lymphoma mutant MyD88 L265P. (B): A potential
model for Myddosome disassembly involves the internalization of the entire TLR complex into endosomes. As the receptor moves from a mem-
brane with a high concentration of PIP2 molecules at the cell surface to a lower concentration of PIP2 at the endosomal membrane, MAL may
detach from the complex. This may disrupt and/or prevent MyD88 interactions with the TIR domain of the receptor and subsequently lead to
dissociation of Myddosome components. (C): An alternative model of disassembly may be driven by intrinsic instability of the active Myddosome
complex. Following post-translational modifications such as the phosphorylation of IRAK1 and its loss from the Myddosome, IRAK4 may become
unstable and dissociate leading to complete disassembling of the complex

4.1 Myddosome formation a helical ring, coinciding with the DD positioning in the crystal struc-
ture of the Myddosome. Loiarro et al. also identified residues E183,
The exact stoichiometry and mechanism of Myddosome formation in
S244 and R288 in the TIR domain that when mutated, prevent MyD88
vivo is still a prominent question in the field, that is, does the complex
homodimerization and recruitment of IRAKs.86 Interestingly, peptides
exist physiologically?
comprising around 30 amino acids that span the region around E183,
Some evidence for cellular assembly of the Myddosome complex
were able to bind to endogenous full length MyD88 causing dimer-
has come from identification of mutations in MyD88 that disrupt
ization disruption and reduced TLR responses.86 The ID of MyD88 is
downstream signaling. Jiang et al. used random germ-line mutagene-
essential for its function, as MyD88 lacking the ID fails to induce sig-
sis that identified an isoleucine to asparagine variant (I179N) that was
naling downstream of TLRs.87 Furthermore, the structure of the Myd-
found to ablate TNF secretion from macrophages in response to all
dosome revealed that the prototypical DD of MyD88 required a region
TLR ligands except those activating TLR2/6 heterodimers or TLR2.81
of the ID to form a complete DD structure.71 Indeed, a splice variant
Residues 195-197 located in the BB loop of MyD88, were also shown
of MyD88 known as MyD88 short (MyD88s) which contains the DD
to be important for MyD88 signaling.82,83 Multiple patients with pyo-
but lacks exon 2, the coding region of the ID, was found to prevent
genic bacterial infections were found to express a variant of MyD88
IRAK1 phosphorylation due to its inability to recruit IRAK4, acting in a
with the mutation R196C (within the BB loop), which fails to bind the
dominant negative manner.87,88 Whereas full length MyD88 is consti-
IL-1R showing severe defects in cytokine production in response to IL-
tutively expressed, MyD88s expression is induced following sustained
1𝛽.84 In addition, Vyncke et al. recently defined 4 key sites in MyD88-
TLR4 or IL-1R activation, acting as a negative feedback mechanism.87
TIR including the regions within the BB loop and 𝛼E, 𝛼D, and 𝛼C’ helices
Residues E52 and Y58 in the MyD88-DD are also important for linking
that are involved in MyD88-TIR oligomerization and interactions with
IRAK4 to the Myddosome.71,89 Patients with a homozygous in-frame
MAL and TLR4.85 Proline 200 of the BB loop inserts between W284
deletion of E52 of MyD88 suffer from invasive bacterial infections and
in the 𝛼E helix and R196 in the BB loop, whereas D195 and D197 of
cannot induce cytokine responses to multiple TLR agonists.84 Collec-
the BB loop also interact with R288 and R291 in the 𝛼E helix forming
tively these MyD88 mutations provide strong evidence for the physi-
an asymmetric MyD88 dimer.85 MyD88-TIRs also form a symmetric
ologic requirements of the binding interfaces formed within the active
dimer, which when alternated with the asymmetric positioning forms
Myddosome structure.
346 BALKA AND DE NARDO

Whereas mutational and structural analyses are highly sugges- vations suggest that following an initial TIR-driven assembly process
tive of its biological relevance, definitive proof that the Myddosome mediated by activation of membrane bound TLR dimers, Myddosomes
forms upon TLR activation in living cells has been harder to obtain. may detach from the intracellular TIR domains and be released into the
Bryant and colleagues recently showed using live cell imaging tech- cytosol. This possibility is strengthened by the finding that a stoichio-
niques, that 6 MyD88 molecules form clusters at the cell membrane metric mismatch between activated dimeric receptor complexes and
following LPS stimulation, matching the stoichiometry of the crystal oligomeric Myddosomes exists,72 as well as the presence of potential
structure of the Myddosome DDs.72 Although 6 molecules of MyD88 is transient interactions between TIR domains of TLRs and MyD88,92 as
considered to be optimal, other stoichiometries for MyD88 have been discussed above (Section 4.1).
reported, including 7 or 8 molecules, suggesting that other arrange- This notion is further strengthened by the discovery of a specific de
ments may exist.70 However, as a TLR dimer is expected to only form novo leucine 265 to proline (L265P) mutation within the TIR domain
binding sites for 2 MyD88-TIRs, how 6 or more MyD88 molecules can of MyD88 present in a high number of B-cell human lymphomas, which
spatially be recruited to the receptor and incorporated into the Myd- leads to constitutive Myddosome complex formation driving aberrant
dosome remains uncertain. The clustering of multiple TLR dimers has NF-𝜅B activation and promoting uncontrolled cancer cell survival.95,96
been considered as a mechanism to provide additional TIR domains To date MyD88 L265P Myddosomes have not been shown to be reliant
for the recruitment of MyD88 molecules70 ; however, it is thought that upon coupling to TIR domains of TLRs or IL-1 family receptors. The
the LRR domains of TLRs are too large and steric hindrance would L265P mutation induces conformational changes in the loop contain-
prevent the formation of oligomers of TLRs.90 Indeed, recently visu- ing residues 243-248, which are important for asymmetric MyD88
alized TLR4 receptor activity in live cells using Halo-tagged TLR4, TIR oligomerization,85 thus the L265P mutation in MyD88 potentially
demonstrated that following LPS treatment, TLR4 formed dimers at mimics an active conformation of bound MyD88-TIR domains with
the plasma membrane as expected, with no formation of higher-order TLR-TIRs providing a platform for IRAK4 recruitment. As survival of
TLR4 oligomers.72 The crystal structure of MAL revealed that it too lymphoma cells carrying the MyD88 L265P are completely dependent
forms a dimer, which when recruited to the TLR-TIR domain could on IRAK4 activity, treatment with small molecule inhibitors of IRAK1
provide additional platforms for the recruitment of MyD88.22 More and/or IRAK4 have shown efficacy in inducing cancer cell death.95,97
recently MAL has also been shown to form a large macromolecular Notably, a recent study from Waldenström macroglobulinemia patient
structure in vitro assembling into large filaments that can also cou- samples observed that MyD88 L265P Myddosomes can be released
ple to TLR4 oligomers.91 Although suggestive of an ability for MAL to from cancer cells and transported within extracellular vesicles to recip-
form filaments upon TLR activation, the physiologic relevance of these ient immune cells where they exist in the cytosolic compartment and
structures remains unclear. Additionally, not all TLRs require MAL for induce signaling.98 In recipient cells MyD88 L265P can further interact
signaling. Nevertheless, it is possible, that only 2 MyD88 molecules are with WT MyD88 molecules to induce amplified inflammatory signal-
in direct contact with the TLR-TIR domain and the other molecules of ing and potentiate the local cancerous microenvironment.98 The idea
MyD88 are recruited merely by homo-oligomerization. Interestingly, of transfer of oligomeric signaling platforms, such as that shown for
Bryant’s group could visualize the formation of so called “super” Myd- MyD88 L265P Myddosomes, is not new in innate immune signaling.99
dosomes within cells, corresponding to 2 Myddosome complexes resid- For instance, upon inflammasome activation, the large macromolec-
ing together, especially in the presence of high concentrations of LPS.72 ular complex comprised mostly of the adaptor protein apoptosis-
Solving crystal structures of TLR-TIR domains complexed with adap- associated speck-like protein containing a CARD (ASC), can also be
tor TIRs (e.g., MAL, MyD88) could provide further important insights released from dying cells into the extracellular space and transferred
into the assembly of the Myddosome. However, attempts to crystal- to bystander cells to amplify the immune response. Observations of
lize these structures have so far been unsuccessful, suggesting that the cytosolic signaling competent MyD88 L265P Myddosomes supports
interactions are weak and may require multiple connections to stabi- the possibility that upon assembly of WT TLR-driven Myddosomes,
lize the complex.92 these complexes may uncouple from membrane anchored receptors
into the cytosol where they continue to signal (Fig. 3A).

4.2 Localization of active Myddosome complexes


4.3 Models of Myddosome disassembly
A pertinent question surrounding the Myddosome, is what happens to
the complex following its assembly? Do active Myddosomes stay cou- Our current understanding of the events succeeding Myddosome for-
pled to TLR-TIR domains or are they released into the cytosol? mation is narrow. Although it is well-recognized that PRR signaling
Utilizing single-molecule fluorescence microscopy of GFP-tagged pathways are subjected to negative feedback mechanisms to prevent
MyD88 expressed in MyD88-deficient macrophages, Bryant and col- sustained activation, including degradation of signaling components or
leagues recently showed MyD88 rapidly forms membrane bound via the induction of negative regulatory molecules,100–102 the question
macromolecular complexes, which are removed from the cell surface still remains: how is the Myddosome complex disassembled? Here we
within about 10 minutes following LPS stimulation.72 Meanwhile using will present evidence for 2 possible models.
more conventional biochemical techniques others have demonstrated One model is that internalization of plasma membrane bound
that stable Myddosome interactions can be isolated up to 2 hours TLRs drives Myddosome disassembly, which has recently been sug-
following TLR activation in macrophages.93,94 Together these obser- gested in the case of TLR472 (Fig. 3B). There is some implication that
BALKA AND DE NARDO 347

upon activation, TLR2 and TLR4 are recruited to specific cholesterol WT IRAK4.76 More recently it was shown that chemical inhibition of
and sphingolipid-enriched microdomains within the plasma membrane IRAK4 kinase activity increases protein-protein interactions within the
called lipid rafts, in order to initiate signaling.103 Lipid rafts have spe- Myddosome in primary human dermal fibroblasts stimulated with IL-
cific biologic properties that could be crucial for driving effective TLR 1𝛽.50 Similar findings were also reported from mouse macrophages,
signaling. For instance, they are enriched in PIP2 domains, which would where pharmacologic and genetic IRAK4 kinase inhibition resulted in
favor the anchoring of MAL (utilized by both TLR2 and TLR4) to lipid increased stability of TLR-induced Myddosome complexes.51
rafts and thus MyD88-dependent signaling and Myddosome forma- Further support for this model comes from the activity of IRAK1. It
tion at the cell surface. The current belief is that upon LPS activation has been reported that following its phosphorylation, IRAK1 interacts
TLR4 engages MyD88, initially transducing signals from the plasma with TRAF6 at the plasma membrane, before enabling its translocation
membrane before TLR4 is rapidly internalized into endosomes (within into the cytosol.110 However, whether loss of IRAK1 from the complex
30 minutes) to facilitate activation of the TRIF-dependent production destabilizes the Myddosome remains unclear. Of note, the crystal
of type I IFNs.11 In the case of TLR2, the precise role of its inter- structure of the Myddosome DDs shows a high charge complementar-
nalization is less understood, although it may be required for spe- ity between the layer connecting IRAK4 and IRAK2.71 Therefore, loss
cific TLR2-mediated responses.104–106 Of note, during endocytosis the of IRAK2 or IRAK1 would expose the IRAK4 layer to the cytosol, which
composition of the membrane dramatically changes, with the concen- may destabilize the complex. Together, these observations suggest
tration of PIP2 domains within the forming membrane cavity rapidly that following the formation of the Myddosome, activation of the
dropping.107 Hence, during TLR2 and TLR4 endocytosis, reductions in kinase components of the complex dictates its stability and ultimately
PIP2 levels within membrane microdomains could cause uncoupling drives protein disassociation and signal termination.
of anchored MAL leading to instability of the Myddosome structure.
However, there are several obvious flaws with this model of disassem-
bly. First, it is not known if other surface TLRs are internalized following 5 CONCLUDING REMARKS
activation (e.g., TLR5); second, MyD88-dependent TLRs expressed on
endosomal membranes (i.e., TLR7/8/9) are not subjected to an inter- The last two decades have equipped us with our current understand-
nalization process; and finally, only TLR2, TLR4, and TLR9 pathways ing of TLRs as integral components of the innate immune system. A
require MAL expression. In further dispute of this model, stable inter- major development in the field of TLR signaling was the discovery
actions of Myddosome components examined by classical immuno- of the Myddosome complex.70 Solving the crystal structure of the
precipitation techniques have been reported several hours following DDs of this multi-oligomeric signaling platform has provided invalu-
LPS activation,93 suggesting the kinetics of TLR4 internalization and able new insight into MyD88 signaling.71 The Myddosome structure
Myddosome disassembly do not correlate. Furthermore, in the case of has substantiated many of the previous findings regarding mutations in
TLR4, endocytosis and subsequent activation of IRF3 and type I IFN molecules involved in early TLR signaling. A more recent breakthrough
signaling was found to be dependent upon CD14 expression.108 Hence, has been the capturing of Myddosomes via advanced imaging tech-
if TLR4 endocytosis did indeed mediate complex disassembly, one niques that have provided the first direct evidence of the structural
might expect Myddosome formation and MyD88-dependent signaling assembly of the complex in living cells.72 A further important observa-
in responses to LPS to be greatly enhanced in cells lacking CD14. How- tion of this study was that the output of TLR signaling (i.e., the level of
ever, this is not the case, as LPS-induced interactions between MyD88 cytokine produced) is highly dependent on the quantity, size and kinet-
and IRAK4 and the activation of downstream signaling molecules was ics at which these complexes form to drive NF-𝜅B activation.72
found to be unaffected by the absence of CD14.108 Although the formation of the Myddosome is now considered “the
A more likely model is that of structural instability in which the mechanism” by which MyD88-dependent TLR and IL-1R signaling ini-
interactions between Myddosome components are transient and sus- tiates, many aspects regarding its regulation remain unclear. Here we
ceptible to alterations in the activation state of binding partners (Fig. have discussed our current understanding of the Myddosome and
3C). This model would implicate the phosphorylation states of IRAK some of the open questions that remain to be answered. However,
proteins, which may reduce intrinsic protein-protein binding affini- another major gap in our current model of TLR signaling is the pre-
ties within the Myddosome by altering binding interfaces. Indeed, de- cise physiologic roles of the enzymatic proteins involved in early sig-
phosphorylation of full length or the KD of IRAK4 in solution leads to nal transduction. Although considerable effort has been dedicated to
formation of stable dimeric complexes, whereas the addition of ATP answer this question—through the generation of mice expressing spe-
induces monomeric auto-phosphorylated IRAK4.78 This is highly sug- cific enzyme inactivating mutants and the use of selective inhibitors—it
gestive that in addition to the DD-DD interactions that organize the remains frustratingly unclear as to the precise roles of IRAK4, IRAK1,
primary complex formation, the KD of IRAK4 plays a critical role in IRAK2, and TRAF6. As discussed throughout this review it appears that
Myddosome stability. Several early reports noted higher affinity inter- in most cases these proteins have substantial scaffolding roles within
actions of IRAKs with kinase-inactive versions of IRAK1 or IRAK4 in the Myddosome, in addition to their enzymatic functions. Even in the
overexpression studies.36,42,102,109 Furthermore, luminescence-based absence of IRAK kinase activities, IRAK4 still appears to link the TLR-
mammalian interactome mapping (LUMIER) was used to examine TIR-MyD88 complex to IRAK1 and/or IRAK2, which subsequently pro-
protein-protein interactions between MyD88 with a KI form of IRAK4, vides a platform for TRAF6 binding. Further evidence for this comes
and revealed an ∼5-fold greater interaction when compared with from a recent study that demonstrated that phosphorylation and
348 BALKA AND DE NARDO

ubiquitylation of IRAK1 may simply be due to Myddosome-induced 2. Lemaitre B, Nicolas E, Michaut L, Reichhart JM, Hoffmann JA.
formation of IRAK1 dimers, rather than as a substrate of IRAK4.111 The dorsoventral regulatory gene cassette spatzle/Toll/cactus con-
trols the potent antifungal response in Drosophila adults. Cell.
Hence, understanding scaffolding versus enzymatic roles, including the
1996;86:973–983.
genuine substrates of the IRAKs, is of fundamental importance to our
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tural assembly and composition of Myddosomes are identical down-
7. De Nardo D. Toll-like receptors: activation, signalling and transcrip-
stream of all MyD88-dependent TLRs and IL-1 family receptors. Such
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a unified model of the Myddosome is not unreasonable as much of
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TLR4 or pathways downstream of IL-1R activation. Interestingly, how-
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tity there are still large conformational alternations between the two 11. Kagan JC, Su T, Horng T, Chow A, Akira S, Medzhitov R. TRAM cou-
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structures, including the regions of the BB loop, and the 𝛼B and 𝛼D
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of conformations have been reported,70 whereas imaging has revealed
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the formation of so called “super” Myddosome structures compris-
controls Toll-like receptor-induced inflammation through the tran-
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and/or numerous possible structural arrangements exist. Ultimately, to associated kinase-1 plays an essential role for Toll-like receptor
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ACKNOWLEDGMENTS 17. Kawai T, Sato S, Ishii KJ, et al. Interferon-alpha induction through Toll-
like receptors involves a direct interaction of IRF7 with MyD88 and
We kindly thank the guest editorial board for the invitation to con- TRAF6. Nat Immunol. 2004;5:1061–1068.
tribute to this exciting volume of JLB for the Lorne Infection and Immu-
18. Fitzgerald KA, Palsson-McDermott EM, Bowie AG, et al. Mal
nity meeting 2018. We would also like to acknowledge work from (MyD88-adapter-like) is required for Toll-like receptor-4 signal trans-
authors in the field whom we were unable to include in this review. duction. Nature. 2001;413:78–83.
Finally, we are thankful to C.M De Nardo (Monash University, Aus- 19. Horng T, Barton GM, Flavell RA, Medzhitov R. The adaptor molecule
tralia) for proofreading of the manuscript. TIRAP provides signalling specificity for Toll-like receptors. Nature.
2002;420:329–333.
20. Kagan JC, Medzhitov R. Phosphoinositide-mediated adaptor
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