Professional Documents
Culture Documents
Molecules of Life
Dr Bibekanand Mallick
Associate Professor
Department of Life Science
NIT Rourkela
Molecules of Life
• Also called as biological molecule or building blocks of life
• These are substances that are produced by cells and living organisms
Sugar and starch are converted into glucose during digestion and
absorbed into the blood circulation
Disaccharides - 2 monosaccharides H O
C CH2OH
covalently linked.
H C OH C O
Oligosaccharides - consist of short HO C H HO C H
chains of monosaccharide units, or H C OH H C OH
residues, joined by characteristic H C OH H C OH
linkages called glycosidic bonds. CH2OH
CH2OH
Polysaccharides - polymers D-glucose D-fructose
consisting of chains of
monosaccharide or disaccharide
units.
Classification
• On the basis of number of sugar units or saccharides units present in their
structures
Carbohydrates
Polysaccharides
Disaccharides
Oligosaccharides (Contain more than
(made up of 2
(3-10 10
monosaccharides)
Monosaccharides monosaccharides) monosaccharide
Sucrose (Glucose +
(made up of 2-6 Raffinose units)
Fructose)
carbon units) (galactose, glu & Dextrin
Maltose (Glucose +
Glucose fruct) – beans, Starch
Glucose)
Fructose cabbage, broccoli Cellulose
Lactose (Glucose +
Galactose Stachyose Hemicellulose
Galactose)
(galactose (2), glu Pectin
Cellobiose (Glucose +
(1) & fruct (1)) Gums
Glucose)
Mucilages
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Monosaccharides
Polysaccharides
Heteropolysaccharides
Homopolysaccharides
Eg: Starch, Glycogen,
Agar, vegetable gum
Cellulose
Some Homopolysaccharides are stored forms of Fuel
The most important storage polysaccharides are starch in plant cells and
glycogen in animal cells. Both polysaccharides occur intracellularly as
large clusters or granules
H O H H O H
H H
OH H OH H
OH OH OH O OH
H NH2 H N C CH3
H
-D-glucosamine -D-N-acetylglucosamine
H C OH H C OH
H C OH
HO C H HO C H
H C OH
H C OH H C OH
H C OH
H C OH H C OH
CH2OH CH2OH COOH
Proteoglycans
Glycosaminoglycans (GAG) bonded to
proteins.
GAGs present in the proteoglycans also
known as mucopolysaccharides, which
consists of long unbranched molecules of
repeating disaccharide units.
The carbohydrate content in these
conjugates are about 50-60%.
Functions:
Generation and differentiation of neurons
Regulation of invasion and metastasis of
tumors
signal transduction pathways implicated in
the proliferation of cells and cell shape
changes
Glycoproteins (Sugar + Protein)
Functions Examples
Provide strength and stability to the tissue. Collagen
Helps in clotting of blood Prothrombin, thrombin,
and fibrinogen
Protect epithelial surfaces of respiratory, urinary, Mucin
digestive, and reproductive tracts.
Hormones Human chorionic
gonadotropin (HCG),
Erythropoietin (EPO),
thyroid-stimulating
hormone (TSH)
Provides immunity to the body Immunoglobulins
(antibodies)
Transports iron in the blood stream and delivers it Transferrin
to various tissues
Enzymes Alkaline phosphatase
Glycolipids (Sugar + Lipid)
Lipopolysaccharides are present on the outer membrane of gram-negative
bacteria such as Escherichia coli and Salmonella typhimurium.
Bacterial Lipopolysaccharide
Digestion, Absorption, and Metabolism of Carbohydrates
• Fasting level of glucose in blood is maintained at 70-100 mg / 100 mL of blood
• After having meal rich in carbohydrates – level raised to 140-150 mg / 100 mL
of blood
• Hyperglycemia – High sugar level, Hypoglycemia – Low sugar level
Carbohydrates are required for complete oxidation of fats. In deficiency of carbohydrates, fats are broken
down for energy and intermediate products such as ketones are formed in large amounts resulting in a
condition called ketosis
Carbohydrates can be converted to non-essential amino acids and can be a source of nitrogen
Fibers and lactose helps some bacteria grows in intestine. This bacteria is able to synthesize B-complex
vitamins in the gut
Dietary fibers play important role in increasing fecal mass by absorbing and holding water, stimulating
peristalsis, and eliminating fecal waste
Fiber also helps in lowering blood cholesterol levels by binding bile acids and cholesterol
Excess Carbohydrates
Excessive consumption of refined sugars will results in dental caries or tooth decay
Excessive sugar depresses appetite, provides hollow calories, and could result in
malnutrition
High intake of sugar and refined carbohydrates increase the blood triglyceride levels
leading to heart diseases
When excessive carbohydrates are consumed, they are converted into fat and
deposited in the adipose tissue, which could lead to obesity, i.e. body weight of 20
percent or more than the desirable weight
Excessive fibre could irritate the intestinal lining, causing cramps or bloating due to gas
formation
Excessive fibre interferes with the absorption and availability of mineral elements such
as iron and calcium
Proteins: Polymers of Amino Acids
R1 20 different types
NH2 C COOH R1 R2
H R2 NH2 C CO NH C COOH
NH2 C COOH H H
amino R acid
NH2 C COOH
H
• Oxytocin (nine amino acid residues), which is secreted by the posterior pituitary and
stimulates uterine contractions
• Bradykinin (nine residues), which inhibits inflammation of tissues;
• Thyrotropin-releasing factor (three residues), which is formed in the hypothalamus
and stimulates the release of another hormone, thyrotropin, from the anterior
pituitary gland.
• Some extremely toxic mushroom poisons, such as amanitin, are also small
peptides (8a.a), as are many antibiotics.
Properties of Proteins
Conjugated Proteins
Hierarchy/Levels of Protein Structure
Secondary Structure
The Helix Is a
Common Protein
Secondary Structure
Levinthal's paradox
In 1969, Cyrus Levinthal noted that, because of the very large
number of degrees of freedom in an unfolded polypeptide
chain, the molecule has an astronomical number of possible
conformations
The hydrophobic effect is the major driving force A 100 residue protein
would require 1052 years
Other forces providing stability to the folded state to search all
Hydrogen bonds conformations (1070)
Electrostatic interactions Most proteins fold in less
Chemical cross links- Disulfides, metal ions than 10 s!!
Lipids
Functions
• Long term energy reserve (adipocytes)
• Structural components of cells
• Hormones – Androgen, testosterone, cortisol, glucocorticoids etc
• Dietary fat acts as carrier of lipid soluble vitamins A,D,E & K
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Fatty acids
• Fatty acids are carboxylic acid consisting of a hydrocarbon (HC) chain
and a terminal COOH group, occurring as esters in fats and oils
Hydrocarbon chain
(18:3 w3)
(20:5 w3)
Omega-6 Fatty acids
• Polyunsaturated fatty acids
• Safflower, sunflower, cottonseed, corn, sesame, and groundnuts
• Linoleic acid (18:2 w6) – 18 carbon length, first double bond between 6th and
7th carbon from the methyl / omega end (sunflower, salmon, tuna, cottonseed,
corn, soyabean, groundnut)
• Arachidonic acid (20:4 w6) – 20 carbon length, first double bond between 6th
and 7th carbon from the methyl / omega end (Animal fats, groundnut)
Mammalian cells lack the enzyme omega-3 desaturase and therefore cannot
convert omega-6 fatty acids to omega-3 fatty acids, which is why certain omega-
3 fatty acids are also essential.
Classification of Lipids
Butter, Cream,
Fats
Simple Lipids Hydrogenated fat
(3 fatty acids +
glycerol) Groundnut, Sesame,
Oils Sunflower, Safflower,
Rice bran, Olive
Phospholipids Lecithin
Diglycerides,
monoglycerides,
Derived Lipids
glycerol and fatty
acids
Cholesterol
Sterols
Fat soluble
Vitamins A,D,E, and K
vitamins
Simple Lipids
• Constitute 98% of food and body fats
• Made up of three fatty acids attached to glycerol
• Mixed triglycerides which means that more than one type of fatty acid is
present in fat
• E.g. cooking oils and butter
48
Compound Lipids
• Fats in which at least one fatty acid is replaced by carbohydrate,
protein or phosphorous (fats + non-fat molecule)
E.g. phospholipids, glycolipids, and lipoprotein
• Membranes are made of phospholipids, glycolipids, lipoproteins and
integral membrane proteins
Phospholipids
• Phosphatidylcholine
• Phosphatidylserine
• Phosphatidylethanolamine
• Sphingomyelin (serine replaces glycerol backbone)
• Phosphatidylinositol (one of the less common types)
Hydrophilic
(soluble)
Hydrophobic
(not soluble
= lipophilic)
Glycolipids
• Pattern of sugar residues is variable
• Always in outer leaflet of cell membrane, & inner leaflet of organelles
• Blood groups ???
Hydrophilic
(soluble)
Hydrophobic
(not soluble
= lipophilic)
Although a minor membrane component (~2%), glycolipids have
some special functions
• Gangliosides in neurons
• Oligosaccharides with negatively charged sialic acid residues
• Attract positive ions, e.g. Ca++
• Affects electrical properties & signaling
Lipoproteins
Lipid-protein complexes are called lipoproteins
Includes
Chylomicrons (Least amount of protein)
Very Low Density Lipoproteins (VLDL) (Low amount of protein)
Low Density Lipoproteins (LDL) (Moderate amount of protein)
High Density Lipoproteins (HDL) (Higher amount of proteins)
Functions of cholesterol
• Precursor of all steroid hormones (sex hormones)
• Precursor of vitamin D,7-dehydrocholesterol which is present in skin and
gets converted to vitamin D upon UV irradiation
• Required for formation of bile
• Essential constituent of cell membranes
• Nucleic Acids
– DNA and RNA
– Polymers of nucleotides
•2 purine bases
•Bases •Adenine: A
•Guanine: G
•Pyrimidines
•Purines
C T U
•2 pyrimidine bases
•Cytosine: C
•Thymine: T
•or Uracil: U
(in RNA, instead of Thymine)
Pentose Sugar
• Carbons are numbered clockwise 1’ to 5’
• DNA – 2’ Deoxyribose sugar
• 2’ deoxyribose – 2’ position
• OH group is replaced by H
DNA Nucleotide
Phosphate
Group
O
5
O=P-O CH2
O
O
N
Nitrogenous base
C4 C1 (A, G, C, or T)
Sugar
(deoxyribose) 3
C C2
Polymer of Nucleotides
• nucleotides can be linked
• phosphates linked to 2 pentoses
• phosphodiester linkages
• Link PO4 at
• 5’ end to 3’ OH of next nucleotide
DNA is a double-stranded
helix, with the two strands
connected by hydrogen
bonds. A bases are always
paired with Ts, and Cs
always paired with Gs as per
Chargaff's rule.
Most DNA double helices
are right-handed, except Z-
DNA, which is left-handed.
The DNA double helix is
anti-parallel, which means
• The bases of DNA are connected via hydrogen
that the 5' end of one strand
bonding. In addition, the outer edges of the nitrogenous
is paired with the 3' end of
bases are also available for potential hydrogen bonding
its complementary strand
with other molecules, such as the proteins that bind and
(and vice versa).
play vital roles in the replication and expression of DNA.
The store of the genetic information: DNA
• It is the principal
regulator of the cell
physiology
DNA RNA
Sugar Deoxyribose ribose
Nitrogenous A, T, G, C A, U, G, C
bases
Structure It is double-stranded ‘ladder’ It is usually single stranded
structure with sugar-phosphate
backbone, and nitrogenous
bases stacked inside like steps
of a ladder.
Location Present in the nucleus. Small It forms in the nucleolus and then
amount is also present in the leaves to different regions of the
mitochondria. cytoplasm.
Function Storage as well as transmission Participate in protein synthesis and
of genetic information. gene regulations
Propagation It’s self-replicating in nature.It’s synthesized from DNA.
Stability The C-H bonds in DNA make it The O-H bond in the ribose of RNA
stable. makes it more reactive compared
to DNA. RNA is not stable under
alkaline conditions.
Damage by UV DNA is susceptible to UV RNA is relatively resistant to UV
damage. damage compared to DNA