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  • Errat

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    Virelle
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    The document reports the results of an analysis of a protein structure file using the ERRAT2 program. The analysis found an overall quality factor of 98.148% for chain A of the TFPI.pdb file, indicating that 98.148% of the protein structure has a calculated error value below the 95% rejection limit threshold for high quality structures. The error value lines on the graph show the confidence levels for rejecting regions with errors above those values.

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    The document reports the results of an analysis of a protein structure file using the ERRAT2 program. The analysis found an overall quality factor of 98.148% for chain A of the TFPI.pdb file, indicating that 98.148% of the protein structure has a calculated error value below the 95% rejection limit threshold for high quality structures. The error value lines on the graph show the confidence levels for rejecting regions with errors above those values.

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    © All Rights Reserved
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    7 views1 page

    Errat

    Uploaded by

    Virelle
    The document reports the results of an analysis of a protein structure file using the ERRAT2 program. The analysis found an overall quality factor of 98.148% for chain A of the TFPI.pdb file, indicating that 98.148% of the protein structure has a calculated error value below the 95% rejection limit threshold for high quality structures. The error value lines on the graph show the confidence levels for rejecting regions with errors above those values.

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    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
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    of 1

    Program: ERRAT2

    File: TFPI.pdb
    Chain#:A
    Overall quality factor**: 98.148
    Error value*

    99%

    95%

    60 80 100
    Residue # (window center)

    *On the error axis, two lines are drawn to indicate the confidence with
    which it is possible to reject regions that exceed that error value.
    **Expressed as the percentage of the protein for which the calculated
    error value falls below the 95% rejection limit. Good high resolution
    structures generally produce values around 95% or higher. For lower
    resolutions (2.5 to 3A) the average overall quality factor is around 91%.

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