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ABSTRACT
Chest radiograph interpretation plays a pivotal role in diagnosing thoracic diseases, yet the reliance on expert
radiologists poses challenges such as fatigue-based errors and limited diagnostic accessibility in certain regions
of the planet. Leveraging deep learning, we introduce a novel algorithm, CheXNeXt, designed to detect 14
different pathologies in frontal-view chest radiographs. In a comprehensive study comparing CheXNeXt with 3
radiologists, including board-certified and senior residents, our algorithm demonstrated expert-level
performance on 11 pathologies. Notably, CheXNeXt outperformed radiologists in detecting atelectasis. While
radiologists excelled in specific cases like cardiomegaly, emphysema, and hiatal hernia, CheXNeXt showcased
efficiency and consistency, completing image interpretation substantially faster. The study highlights the
potential of deep learning algorithms, like CheXNeXt, to augment diagnostic capabilities, addressing challenges
associated with radiologist shortages and enhancing patient access to chest radiograph diagnostics.
Key Points – Chest radiograph, CheXNeXt, Radiologists, Thoracic diseases, Digital Diagnostics
I. INTRODUCTION
Chest radiograph interpretation is a critical In recent years, the emergence of deep learning
component of diagnosing thoracic diseases, approaches has marked a transformative shift in the
providing insights into conditions such as landscape of medical image interpretation. Fueled
tuberculosis and lung cancer that affect millions by large-scale neural network architectures and
worldwide annually. The traditional reliance on propelled by extensive labeled datasets, these
expert radiologists for image analysis, however, algorithms have showcased expert-level
presents formidable challenges that extend beyond performance in various diagnostic tasks. Our study
the nuances of medical diagnosis. This dependence aims to contribute to this paradigm shift by
introduces a susceptibility to fatigue-based errors, introducing CheXNeXt, a convolutional neural
where the demanding nature of the task can network meticulously designed to concurrently
compromise the accuracy and precision of detect 14 distinct pathologies in frontal-view chest
diagnostic assessments. Moreover, the shortage of radiographs.
radiologists in specific geographic regions
exacerbates the limited diagnostic accessibility for The motivation behind the development of
individuals seeking timely medical evaluations. CheXNeXt lies in addressing the dual challenges of
diagnostic accuracy and accessibility. By expertise to regions where the scarcity of
harnessing the power of deep learning, we aspire to radiologists limits accessibility. The comprehensive
alleviate the burden on expert radiologists, reduce training and internal validation of CheXNeXt on
fatigue-induced errors, and extend diagnostic the ChestX-ray8 dataset, coupled with the reference
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standard provided by a panel of three board- pathologies, identifying areas where the algorithm
certified cardiothoracic specialist radiologists, form excels and those where it may require refinement.
the foundation of our investigation into the
algorithm's discriminative performance. Furthermore, we delve into the efficiency aspect,
measuring the time taken for image interpretation
Our comparative analysis involves not only by both CheXNeXt and the radiologists. The stark
algorithmic performance but also an assessment of contrast in time efficiency underscores the potential
CheXNeXt against the proficiency of nine of deep learning algorithms to expedite diagnostic
radiologists, comprising six board-certified processes, addressing concerns related to prolonged
radiologists and three senior radiology residents. waiting times for medical evaluations. Through this
The 14 pathologies under consideration include research, we envision a future where advanced
pneumonia, pleural effusion, pulmonary masses, deep learning algorithms, exemplified by
nodules, and others of clinical significance. In this CheXNeXt, play a pivotal role in complementing
pursuit, we seek to evaluate whether CheXNeXt radiological expertise, reducing diagnostic errors,
achieves radiologist-level performance across these and expanding patient access to chest radiograph
diagnostics on a global scale.
2.1 DATASET
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thoracic diseases through chest radiographs. This colour channel. The maximum pixel value is
section delineates the critical steps involved in the 0.9804, the minimum is 0.0000, the mean value of
Exploratory Data Analysis (EDA) and pre- the pixels is 0.4796, and the standard deviation is
processing procedures, vital for enhancing both 0.2757 as shown in Figure 2.
interpretability and the subsequent efficacy of the
machine learning models.
To obviate potential data leakage, a
meticulous approach to patient-level splitting is
adopted, thereby preventing inadvertent
occurrences of the same patient's radiographic
images in both the training and test datasets. This
meticulous partitioning strategy ensures the
integrity of the model evaluation process.
The dataset encompasses 14 pathology
classes, including Atelectasis, Cardiomegaly,
Consolidation, Edema, Effusion, Emphysema,
Fibrosis, Hernia, Infiltration, Mass, Nodule, Pleural
Thickening, Pneumonia, and Pneumothorax. Each
Figure 3: Single Image Investigation
pathology class exhibits varying prevalence within
the dataset, necessitating nuanced considerations The pre-processing phase is paramount for
during both EDA and subsequent model training. effective model training. Standardization,
The subsequent detailed EDA facilitated through the Keras ImageDataGenerator,
encompasses the scrutiny of individual X-ray ensures a mean pixel value of zero and a standard
images. Pixel value distributions are analysed to deviation of one. This critical step enhances model
gain insights into the intensity variations across convergence during training. Addressing class
image as shown in Figure 2. Additionally, imbalance, a ubiquitous challenge in medical
statistical characteristics, including dimensions, datasets, involves the introduction of weighted loss
pixel intensity, and overall image quality, are functions. These functions assign distinct weights
examined to inform subsequent pre-processing to positive and negative cases based on their
steps. frequency, mitigating the impact of class
imbalances and fostering equal contribution from
each pathology during model training.
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weights, contributes to the establishment of a features is crucial for accurate diagnosis. We
balanced and nuanced model training paradigm. leverage the pre-trained DenseNet-121 on a vast
The integration of a weighted loss function into the dataset, such as ImageNet, to harness its learned
model training pipeline augments model features from a diverse range of visual patterns.
performance, ensuring equitable consideration of The fine-tuning process is a pivotal step in
each pathology. adapting DenseNet-121 to the nuances of chest X-
In conclusion, the rigorous EDA and pre- ray images. Fine-tuning involves adjusting model
processing methodologies outlined herein form the parameters to specialize in discerning disease-
bedrock for the subsequent development of a robust related features. In our case, the fine-tuning occurs
and effective diagnostic model for thoracic on a comprehensive chest X-ray dataset that
diseases. The nuanced understanding of dataset includes various pathologies. This ensures that the
intricacies, coupled with the mitigation of class model becomes adept at capturing the subtle visual
imbalances and standardization of image data, cues indicative of thoracic diseases. The
collectively contribute to the creation of a reliable augmentation of the dataset with more data is a
and accurate diagnostic framework. strategic move, enhancing the model's ability to
generalize across a broader spectrum of cases,
2.3 NORMALIZATION including rare pathologies and diverse patient
populations.
The hierarchical feature extraction
Normalization of input data stands as a pivotal step
capabilities of DenseNet-121 are integral to our
in optimizing the performance of the DenseNet-121
model's success because of its dense networks as
model in our research endeavour. The adoption of
shown in Figure 5. Its densely connected blocks
standardization, where pixel values undergo
enable efficient information flow, capturing
transformation to attain a mean of zero and a
intricate details within chest X-ray images. We
standard deviation of one, is instrumental in
exploit these features to empower CheXNeXt in
ensuring uniformity across input features. The
accurately identifying and classifying a diverse
image is resized to a standardized 512x512 pixel
array of thoracic pathologies. This versatility is
dimension, and pixel values are adjusted based on
particularly valuable in the medical domain, where
the mean and standard deviation derived from the
conditions may manifest in various ways.
ImageNet training set. This is particularly crucial
for DenseNet-121, characterized by densely
connected blocks. The process of normalization
serves to stabilize the training procedure,
mitigating the impact of varied scales in images
and preventing the dominance of individual
features. Aligned with the architecture of
DenseNet-121, this normalization strategy
enhances convergence, regulates activation
function behaviour, and contributes to the overall
efficiency of the model. The meticulous
normalization process facilitates the successful
fine-tuning of DenseNet-121, thereby augmenting Figure 5: DenseNet121 Architecture
its predictive accuracy and robustness.
In terms of data, our chest X-ray dataset,
enriched with a plethora of annotated images,
2.4 CHEXNEXT contributes to the model's robustness. The fine-
tuning process involves training the model on this
DenseNet-121, a robust convolutional neural
expansive dataset, ensuring that it adapts to the
network architecture, is at the core of our chest X-
intricacies of medical imaging. The augmentation
ray image analysis. DenseNet-121 is chosen for its
of data involves feeding the model with additional
unique dense connectivity pattern, promoting
instances, exposing it to a more extensive variety of
feature reuse and enhancing model capacity. This
cases. This not only improves the model's ability to
architecture is particularly beneficial in medical
image analysis, where the extraction of intricate
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generalize but also enhances its sensitivity to rare This architectural choice facilitates an
conditions and subtle abnormalities. efficient flow of information, enabling the model to
CheXNeXt, therefore, stands as a glean insights from various layers simultaneously.
testament to the synergy between DenseNet-121 Trained on an extensive dataset, the DenseNet121
and an enriched dataset. Through meticulous fine- model autonomously learns parameters,
tuning and data augmentation, we optimize the empowering the CheXNeXt algorithm to make
model's performance, aiming for heightened accurate predictions on previously unseen chest
accuracy in chest X-ray pathology detection. This radiographs. This integration exemplifies a robust
approach represents a significant stride in synergy between GradCAM's interpretative
leveraging deep learning for medical diagnostics, capabilities and DenseNet121's proficiency in
showcasing the potential of DenseNet-121 in handling intricate image-based diagnostic tasks as
enhancing the capabilities of chest X-ray analysis shown in Figure 6
systems.
2.5 GRADCAM
The study employed the CheXNeXt algorithm to proportion correct for all pathologies stood at
assess the effectiveness of deep learning in chest 0.828, showcasing the algorithm's overall
radiograph diagnosis, revealing promising results. competence. However, notable variations in
The algorithm exhibited a specificity of 0.927 and a performance were observed, particularly for
sensitivity of 0.594 across 14 pathologies, pathologies with low prevalence during training.
surpassing radiologists in certain areas like effusion The relabelling process, while improving
but lagging behind in others, including performance in some instances, posed challenges in
cardiomegaly, emphysema, and hernia. The mean others, highlighting the need for ongoing research
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and refinement to enhance the accuracy and
reliability of deep learning algorithms in clinical
practice. Figure 8 depicts how the model has
performed well in detecting multiple pathologies.
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The evaluation of the CheXNeXt algorithm for prevalence and the impact of the relabelling
chest radiograph diagnosis demonstrated its process were acknowledged. The study emphasizes
considerable potential in augmenting diagnostic the efficiency of CheXNeXt, completing image
capabilities compared to expert radiologists. With a interpretation substantially faster than radiologists,
specificity of 0.927 and a sensitivity of 0.594 addressing concerns related to prolonged waiting
across 14 pathologies, CheXNeXt outperformed times for medical evaluations. Despite challenges,
radiologists in specific instances, notably excelling the research underscores the potential of deep
in the detection of atelectasis as shown in Table 1. learning algorithms, such as CheXNeXt, to
However, variations in performance were observed, revolutionize chest radiograph diagnostics,
and radiologists demonstrated superiority in complement radiological expertise, and enhance
pathologies like cardiomegaly, emphysema, and patient access to timely and accurate interpretations
hernia. The algorithm showcased overall globally.
competence, with a mean proportion correct of
0.828. In AUC-ROC analysis, CheXNeXt exhibited
significant prowess, achieving a higher AUC of
0.862 for atelectasis compared to radiologists
(AUC 0.808). While the algorithm matched or
outperformed radiologists in 11 instances,
challenges associated with pathologies of low
IV CONCLUSIONS
V REFERENCES
1. Esteva A, Kuprel B, Novoa RA, Ko J, Swetter SM, Blau HM, et al. Dermatologist-level classification
of
skin cancer with deep neural networks. Nature. 2017 Feb; 542(7639):115–8. https://doi.org/10.1038/
nature21056 PMID: 281174455. Ehteshami Bejnordi B, Veta M, Johannes van Diest P, van Ginneken
B, Karssemeijer N, Litjens G, et al.
2. Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in
Women With Breast Cancer. JAMA. 2017 12; 318(22):2199–210. https://doi.org/10.1001/jama.2017.
14585 PMID: 29234806
3. Cicero M, Bilbily A, Colak E, Dowdell T, Gray B, Perampaladas K, et al. Training and Validating a
Deep Convolutional Neural Network for Computer-Aided Detection and Classification of
7
Abnormalities on Frontal Chest Radiographs. Invest Radiol. 2017; 52(5):281–7.
https://doi.org/10.1097/RLI.
0000000000000341 PMID: 27922974
4. Bar Y, Diamant I, Wolf L, Lieberman S, Konen E, Greenspan H. Chest pathology detection using deep
learning with non-medical training. In: 2015 IEEE 12th International Symposium on Biomedical
Imaging (ISBI). 2015. p. 294–7.
5. Maduskar P, Muyoyeta M, Ayles H, Hogeweg L, Peters-Bax L, van Ginneken B. Detection of
tuberculosis using digital chest radiography: automated reading vs. interpretation by clinical officers.
6. Lakhani P, Sundaram B. Deep Learning at Chest Radiography: Automated Classification of Pulmonary
Tuberculosis by Using Convolutional Neural Networks. Radiology. 2017 Apr 24; 284(2):574–82.
https://
doi.org/10.1148/radiol.2017162326 PMID: 28436741
7. Setio AAA, Ciompi F, Litjens G, Gerke P, Jacobs C, Riel SJ van, et al. Pulmonary Nodule Detection in
CT Images: False Positive Reduction Using Multi-View Convolutional Networks. IEEE Trans Med
Imaging. 2016 May; 35(5):1160–9. https://doi.org/10.1109/TMI.2016.2536809 PMID: 26955024
8. Yao L, Poblenz E, Dagunts D, Covington B, Bernard D, Lyman K. Learning to diagnose from scratch
byexploiting dependencies among labels. ArXiv171010501 Cs [Internet]. 2017 Oct 28. Available from:
http://arxiv.org/abs/1710.10501. [cited 2017 Oct 28].
9. Donovan T, Litchfield D. Looking for Cancer: Expertise Related Differences in Searching and
Decision
Making. Appl Cogn Psychol. 2013 Jan 1; 27(1):43–9
10. Huang G, Liu Z, Maaten L v d, Weinberger KQ. Densely Connected Convolutional Networks. In: 2017
IEEE Conference on Computer Vision and Pattern Recognition (CVPR). 2017. p. 2261–9
8
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