Professional Documents
Culture Documents
D espite its limitations, blood culture (BC) remains the reference standard for the
is a laboratory-confirmed bloodstream infection not related to an infection at another The authors declare no conflict of interest.
site that develops within 48 hours of central line placement (10). Blood cultures yielding Published 5 December 2023
contaminants may result in a case of CLABSI as defined by the National Healthcare
Copyright © 2023 American Society for
Safety Network (NHSN) without being a true case of CLABSI. An increase in the reported
Microbiology. All Rights Reserved.
number of CLABSI cases can be associated with reimbursement penalties (11). The
College of American Pathologists (CAP) and other accrediting organizations require
microbiology laboratories to monitor BCC rates, establish a threshold for an acceptable
rate of contamination, and provide feedback to phlebotomists or other health care
providers collecting BC samples (3). Many institutions monitor BCC rates among other
system-level healthcare quality metrics. There are currently several different approaches
to calculating BCC rates, and it is important for laboratories to apply the most appropri
ate and a consistent method for their institution or system.
The focus of this document is on providing information and specific recommenda
tions for microbiology laboratories to determine and track BCC rates. Information about
the clinical significance, costs, and actions to decrease BCC can be found elsewhere (1, 2,
12–14).
Definitions
For the laboratory to prepare a BCC report, it is important to understand the laboratory
parameters defined below.
× 100%
Number of contaminated blood culture sets as determined by laboratory pre‐set criteria
Total number of all eligible blood culture sets collected
The number of contaminated blood cultures (the numerator) and the eligibility of a
culture for inclusion in the measure (the denominator) are determined using a labora
tory’s pre-set criteria. Approaches to selecting these pre-set criteria are detailed in the
following section.
Organisms
The main parameter used by clinical laboratories to differentiate true bacteremia from
contamination is the identity of the organism isolated (15). Certain microorganisms
are rarely considered contaminants, while other organisms almost always represent
contaminants when isolated from BC (2, 5).
The microorganisms most frequently considered contaminants include those present
on the skin as normal commensals: Staphylococcus spp. other than S. aureus [commonly
referred to as coagulase-negative Staphylococcus spp. (CoNS); some laboratories also
exclude S. lugdunensis], Corynebacterium spp., Bacillus spp., and Cutibacterium (Propioni
bacterium) acnes. However, additional microorganisms can be considered contaminants.
See Table 2 for published recommendations from professional organizations.
CoNS are the most common blood culture contaminants with S. epidermidis being
the most common species identified. Among non-S. epidermidis CoNS, isolation of S.
capitis, S. caprae and S. hominis is typically associated with BCC, while about 60%–80% of
S. haemolyticus have been reported to be associated with infection (16). As mentioned
above, many laboratories do not consider S. lugdunensis a contaminant even if isolated
only from one set of blood cultures due to its frequent clinical significance (17, 18).
Patient characteristics such as patient’s age group, immunologic status, presence
of catheters, and other foreign devices should be assessed as these factors can influ-
ence the selection of commensal organisms and the number of BC sets required for
identifying BCC and CLABSI (1). Organisms generally considered potential contaminants
may more often be considered pathogenic in certain patient populations. For example,
in patients at risk of mucosal barrier injury (due to cancer chemotherapy, surgical
procedures, or gastrointestinal pathology, etc.), viridans group streptococci recovered
from a single blood culture set likely represents true bacteremia rather than BCC.
For determining CLABSI rates, the CDC provides a list of organisms considered
TABLE 1 Parameters to be defined for setting up the laboratory criteria for determining BCC rates
TABLE 2 List of organisms typically considered skin contaminants according to different publications and professional organizationsa
also obtained at the same time to facilitate interpretation of BC results and diagnosis of
CLABSI (5, 12).
In contrast to organisms considered contaminants, microorganisms that almost
always represent true bacteremia or fungemia when isolated from a BC include, but
are not limited to, the following: Staphylococcus aureus, Streptococcus pneumoniae,
Streptococcus pyogenes, Streptococcus agalactiae, Listeria monocytogenes, Escherichia
coli, and other members of the Enterobacterales, Pseudomonas aeruginosa, Neisseria
meningitidis, Neisseria gonorrhoeae, Haemophilus influenzae, anaerobic Gram-negative
rods (e.g., Bacteroides spp. and Fusobacterium spp.), Campylobacter spp., Cryptococcus
neoformans/gattii, and Candida species (1, 2, 5).
With the use of matrix-assisted laser desorption/ionization-time of flight mass
spectrometry (MALDI-TOF MS), gram-positive bacilli that were identified as Corynebac
terium spp. or as diphtheroids by previous methods can now be identified to the
genus or species level as Arthrobacter spp., Brevibacterium spp., Microbacterium spp.,
and other Corynebacterium-related genera. Because of the prior inability to accurately
identify these organisms, their association with either true bacteremia or contamination
Other parameters
Additional parameters that the laboratory should select include the number of BC sets in
a BC series and the duration of a BC series that will be used for determining the BCC rate.
The laboratory should also assess whether mixed cultures (e.g., BC growing a pathogen
and a commensal organism) will be counted as a contaminated BC when determining
the BCC rate.
Pros and cons of selecting the number of BC sets and time frame for BC series
In a large Q-tracks study, the CAP defined a contaminated BC as a single BC out of one
or more BCs serially drawn from the same patient in a 24-hour period that yielded one
or more contaminant microorganism(s) as described above. Note that in this definition,
there is no requirement for more than one BC to be collected from a patient for a BC to
be classified as contaminated. The advantages of using this definition are the simplicity of
BCC tabulation and the existence of BCC benchmarks from national studies based on this
definition, against which an institution can compare their BCC rate. A disadvantage is the
potential for overestimating BCC rates with the inclusion of all BC contaminants regardless
of the number of sets drawn. More recently, CLSI guidelines recommended excluding
single BC sets that are positive for possible contaminants from calculation of BCC rates (4).
This recommendation is based on the premise that it is not possible to assess BCC when
only one BC set is drawn in a 24-hour period without a second set for comparison. BCC is
more accurately determined when a single BC set grows a skin commensal organism out
of two or more sets collected within a 24-hour period. The CLSI approach is potentially
more accurate for calculating BCC rates, as long as single BC draws are not the prevailing
institutional practice. On the downside, it requires additional data analysis, which may
pose difficulties for institutions without dedicated resources and expertise. The above
definitions may be applied to monitoring BCs of adult and pediatric patients, but for
pediatric populations in which collection of single BC sets is the predominant practice,
application of the CAP Q-tracks study definition of BCC would be more appropriate (21).
As regards the duration of the BC series, some earlier studies on BCC rates that defined
BCC based on ID specialist interpretations have defined a BC series as the BC sets drawn
over a 48 rather than 24-hour period (22, 23). The 24-hour timeframe discussed above
is reasonable and sufficient if the prevailing practice at an institution is to draw 2–3 BC.
BC sets for BSI work-up followed by start of empiric antibiotic therapy. Use of a 48-hour
period may be more relevant when initial blood cultures are often followed by additional
sets the next day, typically to work up a single clinical episode. It also aligns with the
CDC definition of laboratory-confirmed bloodstream infection which considers all BCs
(which could be pathogenic in certain patient populations), may be considered time and
expertise allow in order to increase the robustness of BCC rate monitoring as a quality
tool (22).
Importantly, the calculation of BCC rate by the laboratory is for the purpose of
institutional quality assurance and operator feedback and not for strict clinical interpreta
tion. The clinical interpretation of BCC is based on clinical judgment as to the likelihood
that the microorganism isolated is the cause of bacteremia in a particular patient.
Applying laboratory criteria, a BC result may be interpreted as contaminated, but the
clinical team may interpret this as true bacteremia based on clinical findings. In most
cases, the laboratory cannot assess with complete certainty the clinical significance of
a BC that yields an organism considered a contaminant, and so the organism isolated
should be reported for the clinical team to make a proper clinical assessment and
determine if further work-up is needed (4). To convey the possibility of BCC on the lab
report, clinical laboratories may choose to include an explanatory comment when one
is recovered from a single set. Commonly used verbiage includes that recovery of such
an organism, e.g., CoNS, from a single blood culture out of two or more sets generally
indicates contamination (5, 26)—for example, “The recovery of this organism from a
single blood culture most likely represent contamination. If further work up is needed,
please contact the Clinical Microbiology Laboratory.” (5).
It bears mentioning that published studies of BCC rates may use different parameters
for the definition of BCC, so published data may not always be generalizable to everyday
practice. Therefore, care should be taken when comparing BCC rates between institu
tions or in published studies as the parameters for determining BCC rates may differ.
For example, to improve stringency of their BCC definition, some studies have excluded
patients with indwelling lines or catheters or those who are immunocompromised or
else applied in-depth physician review of each patient to interpret positive BC results to
determine contamination (27).
Collection of data
Microbiology laboratory personnel often have the responsibility of calculating BCC
rates at a particular institution. This task can be time-consuming, labor-intensive, and
challenging to interpret. Before starting to collect the data, it is important for laboratories
to familiarize themselves with the different types of reports that may be available to
laboratory information system (LIS). Then, the data can be retrieved and an automated
report obtained at specific time intervals, usually monthly or quarterly, to estimate the
BCC rate. Additionally, laboratories may retrieve statistical data from the LIS by develop
ing an automated report with several rules dictating inclusion or exclusion of cultures.
Such a report may also include automated rules that categorize “contaminated” cultures
according to the organism’s name or the inclusion report can be manually filtered for
organism names of potential contaminants in blood cultures. The data may be further
refined either manually or through the LIS based on additional institution- or population-
specific rules to determine which of these positive BCs meet the definition of BCC. The
main advantage of this method is that there is no need to acquire additional software
systems and all the information needed to prepare the BCC report (organism isolated,
number of sets collected, and number of positive sets) is accessible and searchable. The
disadvantages include the need for development of the program by an experienced
team.
BC instrument software
The manufacturers of BC systems offer software which can be used to calculate the BCC
rate according to the parameters set by the laboratory. The use of this tool will depend
on whether the data are bi-directional—meaning the organism identification will be
known by the system so the culture results can be interpreted—or only unidirectional,
meaning the organism identification for each culture will need to be added manually in
order to interpret the results. Advantages include software with flexible and easy-to-gen
erate reports. Among the disadvantages are cost of software, limited customization, and
interfacing connectivity mostly being available to instruments of the same manufacturer,
restricting access to information.
Quality assurance should be done for each type of BCC report prepared to ensure
that the appropriate data have been obtained, that patient locations and collector
identification are properly assigned, and that the overall numbers for BCs collected and
BCC rates derived from the data are accurate. For example, use a different type of report
or source of data to assess the number of BCs collected at one specific location and
compare this to the number obtained in the BCC report. The collector identification
for a specific location in the LIS report can be compared to the list of collectors from
nursing/management for that specific location.
TABLE 3 Data to be included in BCC reports for feedback to the appropriate stakeholders
Acceptable threshold
The acceptable BCC threshold of ≤3% has been widely agreed upon and cited by the
CAP, ASM, CLSI, and other guidelines (2–4, 38–40). This threshold is based on data
gathered from hundreds of clinical laboratories, published in 1998 and 2005, which have
been used to establish benchmarks for BCC rates (3, 38). A wide range of BCC rates were
reported, with median rates falling within the 2%–3% range.
Recent attention has been given to lowering the acceptable threshold to ≤1%, as
it has been noted that this rate is achievable even without blood diversion devices
(2, 4). In large studies, high-performing (90th percentile and above) laboratories have
reported contamination rates of ≤1% (3, 38). Therefore, this threshold may be considered
aspirational by some. Conversely, a BCC rate of ≤1% may not always be achievable due
to an expected baseline of transient bacteremia and true bacteremia that qualify as
contamination based on laboratory criteria. Some investigators have reported that even
with the use of initial blood diversion devices, rates lower than 1% may not be attained
in some environments (41). In any case, institutions may choose to lower the acceptable
threshold from the standard ≤3% to a level that is practically achievable while ensuring
the highest quality BC collections.
Summary
Laboratory diagnosis of bacteremia depends on blood cultures. However, blood cultures
can be contaminated with skin commensal microorganisms making it difficult to
differentiate true infection from contamination. BCC can have severe consequences and
potentially compromise the quality of patient care. Microbiology laboratory personnel
routinely prepare BCC reports, monitor BCC rates, and provide feedback to the appropriate
committees within their healthcare system. It is important for the laboratory to consult
with their IP and AS teams and reach a consensus on the parameters to use for calculating
the BCC rate (e.g., which microorganisms to include as contaminants) to enhance the
accuracy and utility of the BCC report for the purpose of institutional quality assurance
and operator feedback. These strategies can help in reducing the risk of contaminating
samples collected for blood culture.
AUTHOR AFFILIATIONS
1
Department of Pathology, Wake Forest University School of Medicine, Winston-Salem,
North Carolina, USA
2
Department of Pathology, Division of Medical Microbiology, Johns Hopkins University
School of Medicine, Baltimore, Maryland, USA
3
Department of Pathology, Keck School of Medicine of the University of Southern
California, Los Angeles, California, USA
AUTHOR ORCIDs
AUTHOR CONTRIBUTIONS
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