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Models:
SEIR
Erlang–SEIR
Höhle
Flattening the curve
China locks down
Swedes keep distance
The US in quarantine
The app
Models
Compartments and variables for
individuals in each compartment:
S = susceptible
E = exposed
SEIR
I = infectious
R = recovered
D = dead
Erlang–SEIR:
Models a distribution in time of
individuals in different states
Can account for inflow of exposed
or infectious individuals at Erlang-SEIR
dS dR R0 Reproduction
SI I number
dt N dt
Days in
nid infectious state
Equation for E: Equation for D:
dE dD R0
SI E I Transmission
dt N dt nid rate
Case 2:
• Social distancing
R = 0.6R0 for 5 weeks
• Followed by:
R = 0.8R0; after 5 weeks
Case 2 reduces the number
infected ratio of the population:
• 85% for case 1
• 68% for case 2
Progress of
the epidemic
Conclusion
Flattening the curve not only buys time, for example to
prepare hospitals, but also reduces the total number of
people who get infected during the epidemic
Parameter
Estimation
Parameter estimation:
Deaths, most reliable data
First step: exponential growth
Second step: restrictions
Output parameters:
• Reproduction number, R0
• Transmission rate, b
• Mean residence time in state E
• Mean rate in E, e
Impact of restrictions:
Progress of the epidemic
Reduces R0 by a factor < 1
China Locks Down
Parameter estimation:
R0: 3.03
b: 1.01 (day-1) Simulated and
reported deaths
Mean residence time E: 3.00 (day)
Mean rate in E, e: 3.33 (day-1)
Impact of restrictions:
Date for restrictions, Jan. 23
Reproduction number R = 0.185R0
Onset of restrictions: Jan. 23
Progress of
the epidemic
Swedes Keep
Distance
Parameter estimation:
R0: 2.95
b: 0.98 (day-1) Simulated and
reported deaths
Mean residence time E: 3.68 (day)
Mean rate in E, e: 2.71 (day-1)
Impact of restrictions:
Reduces R0:
• Case 1, R = 1.03
• Case 2, R = 0.88
Onset of restrictions: March 20
Progress of
the epidemic
The U.S. in
Quarantine
Parameter estimation:
R0: 2.97
b: 0.99 (day-1) Simulated and
reported deaths
Mean residence time E: 3.68 (day)
Mean rate in E, e: 3.41 (day-1)
Impact of restrictions:
Reduces R0:
• Case 1, R = 0.89
• Case 2, R = 0.55
Onset of restrictions: March 20
Progress of
the epidemic
Conclusion
Social distancing and restrictions in social interaction result
in fewer infected and fewer deaths
However, this makes the population more susceptible for
the next outbreak so we have to be vigilant
Run parameter
2
estimation
The App
Parameter estimation:
Load accumulated deaths as
function of time
Enter estimates as starting guess
Simulation
Use estimated parameters as
input or…
Run simulations by entering your
own parameters
The App
Parameter estimation:
Load accumulated deaths as
function of time
Enter estimates as starting guess
Simulation
Use estimated parameters as
input or…
Run simulations by entering your
own parameters