Professional Documents
Culture Documents
Application of enzymes
1
The world economy
Bioeconomy
Oil (Modern biotechnology
Bioeconomy economy based)
(Traditional agriculture
based)
3
Industrial (white) biotechnology
• Depend on the use of:
• Microorganisms
• Biocatalysts
• Separately or in combination
• Major application
• Energy
• Chemicals and polymers from biomass
4
Application of Enzymes
• Bulk
• Large scale use
• Involve use of crude enzymes preparations
• Fine (reagent grade)
• Small quantity needed
• Mostly highly purified enzyme
• Main application areas include
• Research, diagnostics, medical application, etc
5
Bulk application
• Major areas of application
• Detergent
• Leather tanning
• Starch industry
• Textile industry
• Breweries and alcohol
• Biofuels
• Pulp and paper
• Animal feed industry
• All require large quantities of enzyme
6
Waste degradation
Environment
Detection of toxic
pollutants
Promote cleaner production
(lead to reduction in pollution)
8
Leather tanning industry
• Enzymes used
• Proteases
• Process
• Soaking
• Dehairing
• Bating
• Waste treatment
9
10
Table1: Enzymes prepared at AAU and used for bating of sheep skin
Tensile strength & % Average Tear load Distention and Thickness Porosity & softness
extension tear (N/mm) strength of grain by (mm) (Qualitative
Enzyme load the ball burst test observation)
code (N)
Tensile Elongation Distensio Load at Porosity Softness
strength at breakage n at burst burst (N)
(N/mm2) (%) (mm)
Commercial enzymes
Enzyme 1 20.0 58.3 21.3 36.9 13.7 333.3 0.59 Excellent Excellent
Enzyme 2 17.4 55.6 21.8 32.5 15.0 329.6 0.67 Excellent Excellent
BACC 884 18.1 52.6 30.0 48.0 13.5 330.3 0.62 Excellent Excellent
BACC 41 23.3 62.8 32.7 46.0 14.4 400.6 0.71 Excellent Excellent
BACC 485 26.0 65.8 25.3 42.7 13.7 307.3 0.58 Very good Excellent
11
Alkaline protease from alkaliphiles
• Several alkaline protease producers
• From soda lakes
(Buffer alone) (Buffer + enzyme)
• Example:
• Vibrio sp R-11 protease
• Interesting application for dehairing
Sheep skin
(Buffer alone) (Buffer + enzyme)
Cow hide
12
Enzyme production potential benefits
• In enzyme production
• Substrate account for 30 – 40% of the cost
• Here we use hair & mineral salt solution
• Use of the enzyme lead to reduction in pollution
• Na2S
• Lime
• Protein
• Reduction in import
• Na2S
• Other chemicals
13
Other enzymes for detergent application
14
• Cellulase
• Cloth washing
• Lipase
• Assit surfactants
• Amylase
• Dish washing
15
Detergent
16
Application of enzymes for detergent
• Enzymes used • Requirement
• Proteases • Stability at high pH
• Lipases • Active at cold temperature
• Cellulases • Active and stable at high
• Source temperature
• Largely bacterial • Other requirement
• Compatibility with chelating
agents
• Oxidation stability
17
Alkaline proteases from alkaliphiles from Ethiopia
18
Applications for detergent and protein hydrolysis
• Detergent industry
• Alkaline proteases
As detergent
• Alkaline amylases addiDve
• Protein hydrolysis
• Microbiological media
• Animal feed
• Food application
• Enzyme production cost
• Considered as key
19
Starch industry
20
The starch industry
• Enzymes
• Amylases (bacterial)
• Pullulanase (deranching enzyme)
• Glucoamylase (fungal)
• Glucose isomerase
• Requirements
• Stability and activity at high temperature
for alpha amylase
21
Starch conversion
• Products from starch
• Glucose
• Fructose
• Maltose
• Brewery and alcohol production
• Supplement malt
• Ethiopian breweries import amylase
• Textile industry
22
Breweries and alcohol
• Main applications
• Supplement malt
• To bring about complete hydrolysis
• Usually fungal amylases
• Use adjuncts
• Substitute malt
23
Pulp and paper
24
Pulp and paper industry
• Biobleacing using xylanases
• Reduce chlorine usage by up to 50%
• Up to 80 -90% reduction in pollution
Chlorinated organic
compounds
White pulp
25
• Enzymes • Main drive
• Xylanase (biobleaching) • Environmental concern
• Cellulose (deinking)
•Potentially useful
• Requirement • Alkaliphiles
• Stability and activity
• at high pH value • Thermoalkaliphiles
26
Dairy industry
• Proteases
• Cheese production
• Lactases
• Whey utilization
• Lactose intolerant
• Protein hydrolysis
• Proteases
27
Textile industry
• Enzymes
• Amylase
• Cellulase
• Laccase
• Peroxidase
• Benefits
• Environmental
• Cost reduction
28
Raw fabric
Neutral
Pectinase Scouring Stone washing cellulase
Bleaching
Bleaching Laccase
Catalase
Dying
Finished blue jeans
Peroxidase (excess
dye removal)
Acid cellulase Finishing
Finished fabric
29
Animal feed industry
• Xylanases
• Monogastric animals
• Help nutrient absorption
• Phytases
• Increase phosphorus availability
• Environmental application
• Proteases
• Hydrolysis of insoluble proteins
• Amylases
30
Xylanases and phytases for animal feed application
• As supplement for monogastric animals
• Increase feed assimilation efficiency
• Decrease environmental pollution
• Production
• Solid state fermentation
• Whole moldy bran dried
• and used as feed supplement (?) A fungal xylanase
31
Biofuels
• Starch hydrolysis
• Amylases
• Pullulanases
• Lignocellululose bioconversion
• Cellulases
• Xylanases
• Lignin degrading enzymes
• Enzymatic biodiesl production
• Lipase catalyzed reaction
32
Fuel application of ethanol
• More attention due to rise in petroleum price
• Important for nonoil producing countries
• Some countries like brazil started decades ago
• Main source of ethanol
• Sugar cane in Brazil
• Corn in the USA
33
Current controversy around biofuel
• Competition with food
• Direct use of grain
• The corn converted to ethanol to fill in a sports car once is enough to feed a man for a
year
• Use of land to be used
• Suggested solution
• Second generation biofuel
• From the fermentation of lignocellulosic
34
Lignocellulose bioconversion
• Substrate abundant
• Agricultural and forestry waste
• Annual plants
• Problem
• Difficulty associated with hydrolysis
• Require expensive pretreatment
• Potential of lignocellulosic fungi
35
The energy situation in Ethiopia and the potential for biofuel
4000
7
2
03
8
0/0
1/0
3/0
5/0
6/0
7/0
2/
,/ 05
200
200
200
200
200
200
200
4
200
Fiscal year
36
Share of petroleum import to export earning of the
country
• Petroleum import share on the rise
• Most years above 50%
• Recently >100%
• The country depend on
• Loan
• Foreign aid
• Substitution will have enormous impact
Fiscal Year
37
Energy sources in Ethiopia
• Main source
• Biomass (95%) 0.70% 4.30%
Electricity
• Implication Petroleum
38
Share of diesel, benzene, and kerosene
7.20%
10.80%
23.40% Benzene
Diesel
58.60% Kerosene
Others
39
Liquid biofuels
• First generation biofuels
• Ethanol from grain or sugar cane
• Biodiesel from edible or nonedible vegetable oil
• Competition with food
• Directly
• Indirectly
• Second generation biodiesel
• Ethanol from lignocellulosic
• Biodiesel from algae
• Biocatalysts play a critical role
40
Ethanol from lignocellulose
• Lignocellulose
• Abundant and renewable resource
• Agricultural and forestry residue
• Composition
• Cellulose
• Hemicellulose
• Lignin
• Hydrolysis
• Thermochemical
• Biological
41
3
Ethanol production (x1000 M ) 100
20
40
60
80
0
200
6/0
7
200
7/0
8
200
8/0
9
200
9/1
0
201
0 /11
201
1/1
2
201
2/1
3
Fiscal year
201
3/1
4
201
4/1
5
201
5/1
6
Projected ethanol production in Ethiopia
42
What should we do?
• Give serious attention to 140
80
• Encourage investment 60
• Biotechnologies potential
40
20
43
Screening for lignin degradation
45
Experimental set up immobilized cell reactor
46
Ethanol production by immobilized yeast
Fermentation conditions Batch Immobilized batch Continuous
(immobilized
yeast)
47
Enzymology technology
Application of enzymes II
Application of enzymes
48
Application of enzymes
• As processing aids
• Leather
• Textile, etc
• Pharmaceutical and chemical industries
• Synthesis of optically active isomers
• Reaction under mild reaction condition
• Analytical tools (biosensors)
• Medical, industrial, environmental applications
49
Application of enzymes
• Why use enzymes • Not optimized to work as
• Activity catalysts in industrial reactors
• Selectivity, • Some of their properties are not
well suited for that purpose
• Specificity
• Example:
• Increasingly used in the: • They are water soluble
• Chemical industry: • Unstable physiological conditions
• Food chemistry, • Many inhibited by substrates and
products of the reaction and
• Etc.
• Have rather narrow substrate
specificity
50
Applications of biosensors
• Medical
• Diagnosis (screening and early detection)
• Useful for enhanced health care delivery to community
• Environmental surveillance
• Monitoring, and
• Regulatory
• Food and public safety
• Monitoring (production or regulatory)
• Diagnosis (mycotoxins, antibiotic residue, hormone, etc
• Biological warfare
• Bioprocess monitoring
• Substrate consumption/ product formation
51
Glucose
• Glucose
• Indicator for diabetes
• Endocrine disorders
• Normal range
• 110 ± 25 mg/dl
• Diabetics of 360 mg/dl
• Diabetics on the rise
• 20 mil in USA
• 200 mil world
• 333 million by 2025
• Need careful control
• Preferably from home
52
Transduction of signal?
Glucose oxidase
Glucose + H2O + O2 gluconic acid + H2O2
53
What to measure
• Oxygen consumed
• Original Clark method
• Enzyme separated by membrane
• As glucose enter the oxygen get depleted
54
Hydrogen peroxide
• Advantage
• Can be oxidized on the surface of the electrode
• Drawback
• Need high potential
• A sorbic acid and other biochemical's also oxidize
• Solution
• Membrane separation
55
Transduction of signal?
Glucose oxidase
Glucose + H2O + O2 gluconic acid + H2O2
56
First generation Glucose Biosensor
57
Limitation
• Not suitable for home use
• Useful only in the lab
• Ideal situation?
• Direct transfer of electrons from enzyme to electrode
• Why not?
• Glucose oxidase a flavoprotein
• Has strongly bound FAD
• Electrons from glucose pass over to the FAD
• Then from FAD to oxygen to form hydrogen peroxide
58
The glucose oxidase reaction
Glucose GOXox
H2O2
59
Glucose oxidase homo dimer
60
Glucose oxidase monomer with deeply embedded FAD
61
Limitation of the system
•Barrier for direct electron transfer
• The flavin is deep inside
• No direct contact
• But important to avoid oxygen limitation
62
Second generation glucose sensors
• Use of mediators
• Get oxidized by the enzyme
• Avoid variation due to fluctuation in oxygen tension
• Function of the mediator
• Get oxidized
• Relay electrons to electrode surface
63
The glucose oxidase reaction
Glucose GOXox E
Mediatorred L
E
C
T
R
O
GOXred Mediatorox D
Gluconic acid
E
64
Second generation glucose sensors
• Mediator
• Diffuse to the interior of the enzyme
• Shuttle electrons between the FAD at the center and the surface of the electrode
• No need for hydrogen peroxide formation
• Current produced proportional to glucose conc.
66
Required properties for a mediator
• React rapidly with the reduced enzyme
• Minimize competition from oxygen
• Possess good electrochemical properties
• Low redox potential)
• Low solubility in aqueous medium
• Restrict lose by diffusion
• Must be chemically non-toxic and
• No inhibition
• Must be stable
• both reduced and oxidized forms
67
Commercial Glucose Sensor
68
Lactate
• Indicator of
• Respiratory insufficiency
• Shock
• Heart failure, and
• Metabolic disorders
70
Lactate
• Most amperometric biosensors of lactate
• Immobilized lactate dehydrogenase (LDH) or
• Lactate oxidase
• Procedure
• Same general principle for glucose
71
Cholesterol Biosensor
• High levels of cholesterol is associated with:
• Heart disease
• Hypertension
• Coronary artery disease
• Arteriosclerosis cerebral thrombosis
• A major public concern
• Simple and reliable measurement required
72
• Cholesterol oxidase most commonly used
Cholesterol oxidase
• Cholesterol + O2 Cholest -4 -en -3 -one + H2O2
73
Other measurements
• Urea
• Indicator of kidney diseases and disorders
• Creatine and creatinine
• Cancer markers
• Immunosensors
• Nucleic acids
74
Applications of biosensors
• Medical
• Diagnosis (screening and early detection)
• Useful for enhanced health care delivery to community
• Environmental surveillance
• Monitoring, and
• Regulatory
• Food and public safety
• Monitoring (production or regulatory)
• Diagnosis (mycotoxins, antibiotic residue, hormone, etc
• Biological warfare
• Bioprocess monitoring
• Substrate consumption/ product formation
75
Environmental application
• The last few decades
• Thousands of chemicals synthesized
• Different classes of compounds
• Synthetic organic compounds
• Natural compounds (eg. hormones), drugs, etc)
• Heavy metals (Hg, Cr, etc)
• Serious environmental impact
• Human health
• Environmental deterioration
• Legislation put in place
• Monitoring is a challenge
• Fat and cheap analytical required
76
Biosensors for pesticides
• In agriculture chemicals (pesticides) extensively used to control
• Insects, Fungi, Bacteria
• Weeds, Nematodes, Rodents, etc
• Large quantity of residue accumulate in the environment
• Enter the food chain
• Cause serious damage
• Some are carcinogenic or citogenic
• A need to control and also to clean up
77
• In the USA & Europe legislation put in place
• Enforcement require reliable monitoring of the environment for these compounds
• Maximum allowable limit is set
• Recent trend
• Organochlorine insecticides (e.g. DDT, aldrin and lindane) phased out
• Replaced by organophosphorus (e.g. parathion and malathion) and derivatives of
carbamic acid (e.g. carbaryl and aldicarb)
• Low persistence in the environment
• but pose serious risk due to their high acute toxicity
78
• Commonly used analytical methods
• HPLC
• GC
• GC-MS
• ELISA
• Advantage
• Sensitive
• Reliable
• Precise
•
79
Disadvantage
• Expensive instrumentation
• Require skilled technicians
• Time consuming
• Laborious and
• Not easily adoptable for fi eld analysis
• Alternative
• Use biosensors
• How?
80
• Most based on inhibition of enzymes like;
• Acetylcholinesterase and butyrylcholinesterase
• Method is sensitive
• Main drawback
• Oxidation of the enzymatic product, thiocholine, need a high potential
• Reduce stability of the biosensor
• Other enzymes occasionally used
• Acetolactate synthase
• Acid phosphatase
• Alkaline phosphatase
• Tyrosinase
• Ascorbate oxidase
• Luciferase
• Alternative enzyme
• Organophosphorus hydrolase (OPH)
81
Organophosphorus hydrolase
• Reaction
• Followed spectrophotometrically or
• electrochemically
82
Organophosphorus hydrolase
• Reaction
• Spectrophotometrically or
• Electrochemically
• Direct determination
83
Inhibition-based biosensors
• Organophosphate and carbamate pesticides
• Potent inhibitors of cholinesterase
• Acetylate serine at the active centre
• Commonly used substrate for biosensors
• Acetylthiocholine
• Monitoring of thiocholine produced
• Spectrometric
• Amperometric
• Potentiometric
84
85
Acetycholine + H2O AChE
Choline + acetic acid
86
• Advantages
• Sensitive
• Disadvantages
• Poor selectivity
• Slow and tedious
• Analysis involve multiple steps of reaction
• Measuring initial enzyme activity
• Incubation with inhibitor
• Measurement of residual activity
• Regeneration and washing
87
Catalysis-based biosensors
• Organophosphorus hydrolase hydrolyze
• Organophosphorus pesticides
• Insecticides
• Chemical warfare agents (e.g. sarin)
88
Other methods
• Immunosensors
• Antibodies used
• Detection by labling
• Whole cell biosensor
89
Immunosensors
• Basis
• Antibodies used
• Detection eg. similar to ELISA
• Antibodies have high
• Selectivity
• Analytical sensitivity that
surpass enzymes
• Used for array biosensors
90
Whole cell biosensor
• Hexavalent chromium (Gurung et al 2012)
• Based on sulfur-oxidizing bacteria
• oxidize S0 to H2SO4
• Increased electrical conductivity & low pH
• After 5 h feeding semi continuous 1 min rapid feeding and 29 min batch reaction
• Cr6+ toxicity lead decrease in conductivity and increase in pH (from 2-3 to 6)
• Detection with in minutes to hours
91
Whole cell biosensor
Gurung et al (2012)
92
Application of Biosensors in food
• Composition • Toxins
• Glucose • Mycotoxins
• Lactose • Maltreatment and deterioration
• Sucrose
• Laculose
• Pathogenic microorganisms
• E.coli
• Listeria monocytogenes
• Salmonella
• S. aureus
93
fructose-‐5-‐dehydrogenase
D-Fructose + mediator(ox) 5-keto—fructose + mediator(red)
94
Multiple-sensing: array biosensors
• Existing biosensors detect
• Single or few analytes
• The trend
• Multiple-sensing
• Example: antibody arrays
95
Application of enzymes in the chemical industry
96
The role of enzymes in the chemical industry
• Generation of fermentable sugars
• Hydrolysis of starch, cellulose, hemicellulose, etc
• Starting materials for fermentation
98
Chemicals and polymers
The chemical industry based • Ethanol ethylene
on few building blocks
• Methanol
• Ethylene Well established technology
• Propylene
• Butadiene
• Benzene
• Toluene and
• Xylene
Converted to
• Polymers and plastics
• A huge array of of different fine and
specialty chemicals
99
Some bio-based chemicals & counterparts from petroleum
100
Market value of selected fermentation derived chemicals (2013)
102
Application of enzymes in the food industry
• For processing
• Starch processing
• Production of invert sugar
• To improve quality
• Meat tenderization
• Beer chill proofing
• Analysis
• Biosensors
103
Environmental application
• Reduction of pollution
• Example: Pulp and paper industry
• Assist degradation
• Biological polymers (proteins, lipid, etc)
• Monitoring the level of pollution
• Biosensors
104
Synthetic application (fine chemicals)
• Lipases
• Most popular
• Under organic solvents
• Esterases
• Same as lipase
• Proteases
• Same as lipase
• Aspartame production
105
Synthetic application of enzymes
• Some reactions (eg. steroids transformation)
• Reactants not soluble in water
• Soluble in organic solvents than in water
• Products uunstable in aqueous solvents
• Better
• If the reaction take place in organic solvents
• Advantages of reactions in organic solvents
• Solubility
• Absence of microbial contamination
• Increased product stability
• Keq of a reaction change
• Hydrolytic reactions
• Carry out synthetic reactions
• Water acceptor in hydrolytic reactions
• Always in molar excess and no reversal
• At low water activity other acceptor are used
106
Enzyme stability in organic solvents
• Enzymes
• Some are hydrophilic
• Some are hydrophobic ( those associated with lipids and membranes)
• Hydrophilic enzymes
• Require the presence of a thin layer of water (50 and 500 molecules of water
per enzyme molecule)
• Help to stabilize the conformation
• If they have this water enzymes
• Enzymes operate under anhydrous condition
107
• Effect of pH on enzyme activity
• Enzyme reaction pH dependent
• pH a function of [H+]
• Determine catalytic activity
• How about in organic solvents?
• Enzymes ‘remember’ the last pH
108
• Removal of enzyme-bound water
• Affect stability
• Occur in water-soluble, or miscible, organic solvents
• Lead to enzyme inactivation
• In the presence of the water shell
• Low water activity
• Reduction in thermo-inactivation
• Half life of porcine pancreas lipase at 100°C
• >12 hours in 0.02% water in tributyrin
• 12 minutes at a 0.8% water content
• Instant inactivation in 100% water
109
• Solvent polarity determine stability
• Solvents with low polarity can not disrupt the water shell
• Polarity
• measured by logarithm of the partition coefficient
• (LogP)
• partition coefficient of the solvent between n-octanol and water
110
LogP of different solvents
Butanone 0.3
Ethyl acetate 0.7
Diethyl ether 0.8
Benzene 2.0
Toluene 2.7
Hexane 3.5
Heptane 4.0
Hexadecane 8.7
111
Enzyme stability in organic solvents
• Stability
• Correlated with LogP
• Solvents with logP < 2 denature
enzymes
• Enzymes are stable in solvents
with LogP >
112
Fine application
113
Enzymes in research and diagnostics
• Research and medical/diagnostic
• DNA polymerases
• Restriction enzymes
• Peroxidases
• Diagnosis
• Glucose oxidase
• Others
• Others
• Pectinases for fruit juice clarification
• Xylanases for animal feed (fungal origin)
114
Medical application of enzymes
• Therapeutic
• As supplements
• Pure therapeutic (eg arginase for cancer patients
• Diagnosis
• Monitoring blood glucose level
• ELISA
• Western blotting
• Biosensors
115