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Immunodeficiency Virus
Human Immunodeficiency
Virus
Belongs to retrovirus family,
subfamily - lentivirus
Retrovirus contains RNA-directed
DNA polymerase (reverse
transcriptase) – responsible for RNA to
DNA transcription, reverse of what
usually happens
Retroviruses isolated from virtually
all vertebrate species
Classification of retroviruses
Three subfamilies-
a. Oncovirinae – tumor viruses like Human T-cell
lymphotrophic virus (HTLV) 1 & 2, Simian
lymphotrophic virus (STLV), Avian leukemia virus,
Murine mammary tumor virus (MMTV), Avian
sarcoma virus (ASV) etc
b. Spumavirinae – viruses able to cause “foamy”
degeneration
c. Lentivirinae – agents able to cause chronic infections
with slowly progressive neurological impairment –
e.g. HIV 1 & 2, SIV (simian immunodeficiency virus),
FIV (feline immunodeficiency virus) etc
Human retroviruses
A. Pathogenic:
a. HTLV-1 : responsible for T-cell leukemia,
myelopathy & tropical spastic paraparesis (TSP)
b. HTLV-2 : causes hairy T-cell leukemia
c. HIV-1 & HIV-2 : causative agents of
AIDS
B. Nonpathogenic:
a. Human foamy virus
b. Human placental virus
c. Human genomic virus
Important properties of lentiviruses
Nononcogenic, cytocidal retroviruses
Virion: spherical, 80-100 nm in diameter,
cylindrical core
Genome: ssRNA, linear, positive-sense, 9-10
kb, diploid; genome more complex than
oncogene
Proteins: envelope glycoprotein undergoes
antigenic variation; reverse transcriptase (RT)
enzyme contained inside virions; protease
required for production of infectious virus
Envelope: present
Replication: RT makes DNA copy from
genomic RNA; provirus DNA is template for
viral RNA. Genetic variability is common
Properties of lentiviruses
Maturation: particles bud from plasma membrane
Outstanding characteristics:
* Members are nononcogenic & may be cytocidal *
Infect cells of the immune system
* Proviruses remain permanently associated with
cells
* Viral expression is restricted in some cells in vivo
* Cause slowly progressive, chronic diseases
* Replication is highly species-specific
* Group includes the causative agents of AIDS
HIV
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Adults and children estimated to be living with HIV, 2005
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HIV/AIDS situation in
Bangladesh
HIV/AIDS status in Bangladesh
Still low prevalent area due to:
a. People religious minded
b. STIs not highly prevalent in general population
c. Prostitution limited in urban areas where only 10-
15% people live
d. Existence of homosexuality limited
e. Injectable drug abuse not extensive
First HIV +ve case detected in 1989 in a foreigner (drug
smuggler)
First full-blown case of AIDS diagnosed in 1990 in a sea-
farer – subsequently died of persistent diarrhea
Total HIV positive case till December 2007: 1207
Developed AIDS: 365
Death – 254; death in 2007 is 14 – mostly from TB
Determinants for a severe epidemic outburst
High prevalence of HIV infection in neighboring countries
Increased population movement to & from neighboring countries
and quite considerable internal movements
Continuous international migration of labor, military personnel &
visitors
Lack of awareness of HIV infection & its possible modes of
transmission in general population
Presence of CSWs (commercial sex workers)
High prevalence of STIs especially among high-risk behavior group
Increasing trends in intravenous drug uses
Increasing number of homosexuality
Low condom usage by high-risk behavior group
Existence of promiscuity (premarital & extramarital sexual behavior)
Lack of voluntary screening of blood (about 2,00,000 units blood
transfused yearly of which 70-75% from commercial donors)
Special contextual features-
widespread poverty, unequal access of health services, subordinate
status of women, low literacy & education levels
Modes of transmission
A. Sexual route: promiscuous sex (both
heterosxuality & homosexuality) - >75% of all cases
Heterosexuality is the main mode of
transmission in the developing countries
B. Mother to child: may be transplacental, during
delivery or due to breast feeding
Second major mode of transmission
Higher in Africa (30-40%) than in North America
or Europe (15-20%)
C. Parenteral: transfusion of infected blood or
blood products (most efficient route),
contaminated needles & syringes (IVDUs &
needle stick injury), surgical & dental
instruments, other skin piercing instruments
D. Probable other modes: through donated
organs & tissues for transplantation or through
donated semen
HIV not transmitted by
Casual contacts: touching,
hugging, sharing commode, hand
shaking, sharing eating & drinking
utensils, second hand clothing etc
Blood sucking insects like
Other regulatory genes i.e.. tat, rev, vif, nef, vpr and vpu
HIV particles
Together We Can Defeat the Common
Enemy
HIV
HIV-2
First identified in 1985, prevalent mainly in the West
Africa
Less virulent & longer incubation period
Spread slower & average age of infection appears to
be higher than that of HIV-1 in the same population
STI patients & prostitutes have the highest risk of
HIV-2 infection, indicating that transmission is
mainly sexual
Mother to child transmission & HIV-2 infection in
infants and children are unusual
Nucleic acid of HIV-1 & HIV-2 have 40% homology,
but HIV-2 has more relatedness with SIV
Difference between HIV 1 & HIV-2
Points HIV-1 HIV-2
Geographical World wide Mostly West
distribution Africa
Incubation period More Less
Relatedness with SIVcpz (Chimpanzee) SIVsm (Sooty
mangaby)
Envelope Gp120, gp41 Gp105,gp36
glycoprotein
Regulatory protein Vpu Vpx
Risk of transmission High Less
Classification of HIV
Types- two : HIV-1 & HIV-2
Groups: s distinct groups of HIV-1: ‘M’ (Major)-
widely distributed & ‘O’ (Outlier). Recently another
group known as ‘N’ meaning new or ‘non M-non O’
Group O & N are restricted to West Africa
Based on env gene sequences: M have 11 subtypes
(A-K); O & N have no subtypes
HIV-2 have 5 subtypes (12-fold slower progression
to AIDS)
Subtypes are referred to as “clades”; genetic clades
do not correspond to neutralization serotype groups
Clade C is the fastest-spreading clade worldwide,
being present in India, Ethiopia & Southern Africa
HIV & genetic variants
Virus group Subtypes Predominant area Association
HIV-1 M A Africa Heterosexual
Eastern Europe IDU
B Europe, North America MSM, IDU
Australia
Thailand MSM
IDU
C Southern Africa, India Heterosexual
D East & Central Africa Heterosexual
AE Thailand Heterosexual
O/N
West Africa Heterosexual
HIV-2 West Africa Heterosexual
Origin of virus
HIV-2
Progenitor of HIV-1 is still not clear,
Spread of
infection to
activated
CD4+
lymphocytes
Entry of Days
virus-infected
cells into the
bloodstream
Widespread
dissemination
Brain Spleen Gut Lymph
nodes
* Each day >1010 virions produced; 109 CD4 cells destroyed ( daily
turnover of 30% of total viral burden & 6-7% of total)
CCR5
CD4
1. Mandatory Testing
2. Voluntary Counseling and Testing
3. Routine Testing
4. Diagnostic Testing
Laboratory diagnosis
Evidence of HIV infection can be detected in three
ways-
a. Virus isolation
b. Measurement of viral nucleic acid or antigen
c. Serologic determination of antiviral
antibodies
Nonspecific tests:
Leukopenia with lymphopenia
Reversal of CD4:CD8 ratio
High ESR
Cutaneous anergy
Functional abnormalities of macrophages, B cells etc
Virus isolation
Can be cultured from lymphocytes & occasionally
from specimens from other sites
Number of circulating infected cells vary with the
stage of disease – higher in AIDS
Most sensitive virus isolation technique is to
cocultivate test sample with uninfected, mitogen-
stimulated peripheral blood mononuclear cells
Viral growth detected by testing culture supernatant
fluids after 7-14 days for-
viral RT activity or
virus specific antigen – p24
Culture is time consuming & laborious
Used for diagnosis of HIV infection in babies born to
HIV infected mothers
Detection of viral nucleic acid or antigen
► p24:
detected in plasma by ELISA soon after infection
disappear after appearance of ab
reappearance indicate poor prognosis –
development of AIDS
► Viral load:
detection of viral nucleic acid by RT-PCR,
branched chain DNA9bDNA), NASBA etc
can detect as little as 400 viral RNA copies/ml of
blood
important markers for disease progression &
valuable in monitoring effective of antiviral
therapy (two baseline tests & then every 3
months)
Serology
Serology is the usual method for diagnosis
Normally takes 4-6 weeks before HIV-antibody appears following
exposure
Antibodies to core protein p24 or envelope glycoprotein gp41,
gp120 or gp160 more commonly detected
Divided into screening assay & confirmatory test
Screening assay:
a. ELISA – commonly performed
b. Immunochromatographic test (ICT)
c. Membrane ELISA or spot ELISA
d. Particle agglutination test (PAT) – not used now
HIV-1 ELISA can detects 40-90% of HIV-2 infections
Positive test repeated with fresh sample & confirmed by Western
blot
False-positive ELISA: individuals having immunologic
abnormalities or neoplasms or who have been multiply transfused
ELISA for HIV antibody
CONTROL
CONTROL
CONTROL
PATIENT
PATIENT
PATIENT
PATIENT
Trinity Biotech Unigold
Rapid Test
POSITIVE NEGATIVE INVALID INVALID
Confirmatory test
Western blot: commonly used – gold standard
test
Other tests are – immunofluorescence test,
radioimmunoprecipitation test
In Western blot – antibodies to HIV proteins of
specific molecular wts can be detected. HIV
proteins on nitrocellulose strips are gp160, gp41,
p65, p55, p51, p31, p24 & p18
For positive test any 2 or 3 major bands must be
present (gp160, and/or gp120, gp41 & p24)
By Lia Tek HIV III line immunoassay HIV-1 &
HIV-2 can be separated. Ag lines are gp120,
gp41, p31, p24, p17, gp106, & gp36
gp106 (gp105) & gp36 present in HIV-2
Western blot for HIV antibody
• Abstinence
• Being Faithful
• Condoms
Beyond the ABC
1. Get tested
2. No unprotected sex without certainty of your
partner’s HIV status
3. If HIV-positive, get into care
4. If HIV-negative, protect your status
5. Undiagnosed HIV in pregnancy kills children
6. Your undiagnosed HIV could kill your partner
7. Your partner’s undiagnosed HIV could kill you
You can not see HIV!
Or Chastity Or pride
The daily death toll from AIDS in the next 10 years
HIV INFECTION IS
PREVENTABLE!
There is no vaccine against HIV!
200-350 Monitor/recommended
based on symptoms &
VL
<200 Recommend
Replication
The first step of infection is the binding of gp120 to the
CD4 receptor of the cell, which is followed by
penetration and uncoating.
The RNA genome is then reverse transcribed into a DNA
provirus which is integrated into the cell genome.
This is followed by the synthesis and maturation of virus
progeny.
HIV-1 Genotypes
There are 3 HIV-1 genotypes; M (Main), O (Outlayer), and N (New)
M group comprises of a large number subtypes and recombinant forms
Subtypes - (A, A2, B, C, D, F1, F2, G, H, J and K)
Recombinant forms - AE, AG, AB, DF, BC, CD
O and N group subtypes not clearly defined, especially since there are
so few N group isolates.
As yet, different HIV-1 genotypes are not associated with different
courses of disease nor response to antiviral therapy.
However, certain subgroups may be difficult to detect by certain
commercial assays.
Clinical Features
1. Seroconversion illness - seen in 10% of individuals a few weeks
after exposure and coincides with seroconversion. Presents with
an infectious mononucleosis like illness.
2. Incubation period - this is the period when the patient is
completely asymptomatic and may vary from a few months to a
more than 10 years. The median incubation period is 8-10 years.
3. AIDS-related complex or persistent generalized lymphadenopathy.
4. Full-blown AIDS.
Opportunistic Infections
Protozoal Pneumocystis jirovecii (now thought to be a fungi),
toxoplasmosis, crytosporidosis
HIV Antigen tests - they were widely used as prognostic assays. It was
soon apparent that detection of HIV p24 antigen was not as good as serial
CD4 counts. The use of HIV p24 antigen assays for prognosis has now
been superseded by HIV-RNA assays.
Anti-Retorviral Susceptibility Testing
It is now generally accepted that anti-viral susceptibility testing should
be a routine part of the management of HIV-infected patients.
It is reported that the outcome would be better if the results are
interpreted by an expert in this area.
There are two types of antiviral susceptibility assays:
Phenotypic – very difficult and expensive to carry out. Thought to give a
better idea of the actual situation in vivo.
Genotypic – the RT and Protease genes are sequenced. This can be done
in-house and the results interpreted automatically by the HIV sequence
database in the US.
http://resdb.lanl.gov/Resist_DB/default.htm
Commercial systems (Trugene, ABI and others) available which relies on
their own database and interpretation by a panel of experts that meet
regularly.
Treatment
Zidovudine (AZT) was the first anti-viral agent shown to have
beneficial effect against HIV infection. However, after prolonged
use, AZT-resistant strains rapidly appears which limits the effect of
AZT.
Combination therapy has now been shown to be effective,
especially for trials involving multiple agents including protease
inhibitors. (HAART - highly active anti-retroviral therapy)
The rationale for this approach is that by combining drugs that are
synergistic, non-cross-resistant and no overlapping toxicity, it may
be possible to reduce toxicity, improve efficacy and prevent
resistance from arising.
Anti-Retroviral Agents
Nucleoside analogue reverse transcriptase inhibitors e.g. AZT,
ddI, lamivudine
Non-nucleoside analogue reverse transcriptase, inhibitors e.g.
Nevirapine
Protease Inhibitors e.g. Indinavir, Ritonavir
Fusion inhibitors e.g. Fuzeon (IM only)
HAART (highly active anti-retroviral therapy) regimens
normally comprise 2 nucleoside reverse transcriptase inhibitors
and a protease inhibitor. e.g. AZT, lamivudine and indinavir.
Since the use of HAART, mortality from HIV has declined
dramatically in the developed world.
Prevention
The risk of contracting HIV increases with the number of sexual partners. A
change in the lifestyle would obviously reduce the risk.
The spread of HIV through blood transfusion and blood products had virtually
been eliminated since the introduction of blood donor screening in many
countries.
AZT had been shown to be effective in preventing transmission of HIV from
the mother to the fetus. The incidence of HIV infection in the baby was
reduced by two-thirds.
The management of health care workers exposed to HIV through inoculation
accidents is controversial. Anti-viral prophylaxis had been shown to be of
some benefit but it is uncertain what is the optimal regimen.
Vaccines are being developed at present but progress is hampered by the high
variability of HIV. Since 1987, more than 30 HIV candidate vaccines have
been tested in approximately 60 Phase I/II trails, involving more than 10,000
healthy volunteers. A phase III trial involving a recombinant gp120 of HIV
subtype B was reported in Feb 2005 to be ineffective in preventing HIV
infection.
Mandatory Testing
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Regional HIV and AIDS statistics and features, 2003 and 2005
Adults (15+) and Adult (15-49) Adult (15+) and
REGION Adults (15+) and children prevalence child deaths due to
children living with HIV newly infected with HIV (%) AIDS
2005 2003 2005 2003 2005 2003 2005 2003
24.5 million 23.5 million 2.7 million 2.6 million 6.1 6.2 2.0 million 1.9 million
Sub-Saharan Africa [21.6‒27.4 [20.8‒26.3 [2.3‒3.1 million] [2.3‒3.0 million] [5.4‒6.8] [5.5‒7.0] [1.7‒2.3 million] [1.7‒2.3 million]
million] million]
North Africa and 440 000 380 000 64 000 54 000 0.2 0.2 37 000 34 000
Middle East [250 000‒720 [220 000‒620 [38 000‒210 000] [31 000‒150 000] [0.1‒0.4] [0.1‒0.3] [20 000‒62 000] [18 000‒57 000]
000] 000]
8.3 million 7.6 million 930 000 860 000 0.4 0.4 600 000 500 000
Asia [5.7‒12.5 million] [5.2‒11.3 million] [620 000‒2.4 [560 000‒2.3 [0.3‒0.6] [0.2‒0.6] [400 000‒850 [340 000‒710
million] million] 000] 000]
78 000 66 000 7200 9000 0.3 0.3 3400 2300
Oceania [48 000‒170 000] [41 000‒140 000] [3500‒55 000] [4300-69 000] [0.2‒0.8] [0.2‒0.7] [1900‒5500] [1300‒3600]
1.6 million 1.4 million 140 000 130 000 0.5 0.5 59 000 51 000
Latin America [1.2‒2.4 million] [1.1‒2.0 million] [100 000‒420 [95 000‒310 000] [0.4‒1.2] [0.4‒0.7] [47 000‒76 000] [40 000‒67 000]
000]
330 000 310 000 37 000 34 000 1.6 1.5 27 000 28 000
Caribbean [240 000‒420 [230 000‒400 [26 000‒54 000] [24 000‒47 000] [1.1‒2.2] [1.1‒2.0] [19 000‒36 000] [19 000‒38 000]
000] 000]
Eastern Europe and 1.5 million 1.1 million 220 000 160 000 0.8 0.6 53 000 28 000
Central Asia [1.0‒2.3 million] [790 000‒1.7 [150 000‒650 [110 000‒440 [0.6‒1.4] [0.4‒1.0] [36 000‒75 000] [19 000‒39 000]
North America, million] 000] 000]
Western and Central 2.0 million 1.8 million 65 000 65 000 0.5 0.5 30 000 30 000
[1.4‒2.9 million] [1.3‒2.7 million] [52 000‒98 000] [52 000‒98 000] [0.4‒0.7] [0.3‒0.6] [24 000‒45 000] [24 000‒45 000]
Europe
38.6 million 36.2 million 4.1 million 3.9 million 1.0 1.0 2.8 million 2.6 million
TOTAL [33.4‒46.0 [31.4‒42.9 [3.4‒6.2 million] [3.3‒5.8 million] [0.9‒1.2] [0.8‒1.2] [2.4‒3.3 million] [2.2‒3.1 million]
million] million]
06/06 e 134
Estimated number of adults and children
newly infected with HIV, 2005
Western & Eastern Europe
Central Europe & Central Asia
North America 22 000 220 000
[150 000– 650 000] East Asia
43 000 [18 000 – 33 000]
[34 000 – 65 000] 97 000
Caribbean North Africa & Middle [55 000 – 290 000]
East
37 000 64 000 South & South-East
[26 000 – 54 000]
[38 000 – 210 000] Asia
Sub-Saharan Africa 830 000
Latin America 2.7 million [530 000 – 2.3 million]
Oceania
140 000 [2.3 – 3.1 million]
7200
[100 000 – 420 000]
[3500 – 55 000]
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