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TRANSCRIPTION AND
TRANSLATION
Heritable traits are passed down to offspring through genes
GENES
GENES
◦ There are 3 billion base pairs in human gamete
DNA
◦ Over 20 000 protein coding genes
◦ Differences between individuals are around 1%
◦ 2 types of DNA: coding & non-coding
◦ Coding DNA is around 2% of the whole genome
◦ Non-coding sequences is around 98% and contain
genes for rRNA or tRNA
◦ Genes may occur as operons (in Procaryotes)
◦ Lactose operon
◦ Or multigene families (in Eukaryotes) – clusters
of genes with similar or connected functions
MULTIGENE
◦ Simple multigene families (5S RNA) – identical
genes
Helicase
http://en.wikipedia.org/wiki/File:Helicase.png
Helicase unwinds the double helix and separates the two strands by breaking hydrogen bonds
DNA Polymerase
• The polymerization reaction is a
condensation reaction
3. Each new strand contains one original and one new strand; therefore,
DNA replication is said to be a semi-conservative process
https://upload.wikimedia.org/wikipedia/commons/3/33/DNA_replication_split_horizontal.svg
PCR can be used to amplify small amounts of DNA
Polymerase Chain Reaction (PCR) Learn the detail using the virtual lab and/or
the animation:
• Typically used to copy a segment of
DNA – not a whole genome
• Used to amplify small samples of DNA
• In order to use them for DNA profiling,
recombination, species identification
or another research
• The process needs a thermal cycler,
primers, free DNA nucleotides and
DNA polymerase
http://learn.genetics.utah.edu/content/labs/pcr/
http://www.sumanasinc.com/webcontent/animations/content/pcr.html
Use of Taq DNA polymerase to produce multiple copies of DNA rapidly by the polymerase chain
reaction (PCR)
To summarize:
PCR is a way of producing large quantities of a specific target sequence
of DNA
It is useful when only a small amount of DNA is available for testing
e.g. crime scene samples of blood, semen, tissue, hair, etc.
• One cycle of PCR yields two identical copies of the DNA sequence
• A standard reaction of 30 cycles would yield 1,073,741,826 copies
of DNA (230)
Transcription is the synthesis of mRNA copied from the DNA base sequences by RNA polymerase
Translation is the synthesis of polypeptides on ribosomes
Cytoskeletons
Packing of DNA
Blood clotting
Immunity
Membrane
transport
http://learn.genetics.utah.edu/content/molecules/firefly/
Transcription is the synthesis of mRNA copied from the DNA base sequences by RNA polymerase
Translation is the synthesis of polypeptides on ribosomes
TRANSCRIPTION
Transcription animation
◦ First step of gene expression
◦ Synthesis of messenger RNA (mRNA) on matrix DNA by RNA polymerase
◦ Synthesis of mRNA from 5’ 3’ on the matrix DNA strand (3’ 5’)
TRANSCRIPTION
Transcription is the first step of gene expression, in
which a particular segment of DNA is copied into RNA by
the enzyme RNA polymerase
The anti-sense/non-coding/template strand acts as the template for the transcription of mRNA
During transcription, RNA polymerase unwinds a short section of the DNA double helix near the start of the gene
http://www.dnai.org/b/index.html
http://highered.mcgraw-hill.com/olc/dl/120078
/micro15.swf
Transcription is the synthesis of mRNA copied from the DNA base sequences by RNA polymerase
Transcription is the process by which an RNA sequence is produced from a DNA template:
• The enzyme RNA polymerase binds to a site on the DNA at the start of a gene (The sequence of
DNA that is transcribed into RNA is called a gene)
• RNA polymerase separates the DNA strands and synthesizes a complementary RNA copy from
the antisense DNA strand
• It does this by covalently bonding ribonucleoside triphosphates that align opposite their exposed
complementary partner (using the energy from the cleavage of the additional phosphate groups
to join them together)
• Once the RNA sequence has been synthesized:
- RNA polymerase will detach from the DNA molecule
- RNA detaches from the DNA
- the double helix reforms
• Transcription occurs in the nucleus (where the DNA is) and, once made, the mRNA moves to the
cytoplasm (where translation can occur)
https://upload.wikimedia.org/wikipedia/commons/3/36/DNA_transcription.svg
Promoters of Prokaryotes
• Promoter is a region of DNA that initiates transcription of a particular
gene
• Promoters are located near the genes they transcribe, on the same strand
and upstream on the DNA (towards the 3' region of the anti-sense strand,
also called template strand and non-coding strand)
• Promoters can be about 100–1000 base pairs long
• The promoter contains two short sequence elements approximately -10
and -35 nucleotides upstream from the transcription start site
Promoters of
Eukaryotes
◦Eukaryotic
promoters are
diverse and are
divided in more than
10 classes
3 STEPS IN TRANSCRIPTION
Initiation
Elongation
Terminatio
n
Transcription in Prokaryotes
1. Initiation
◦ Sigma factor recognizes the promoter region and
facilitates the binding of RNA polymerase
• RNA Polymerase moves along 3’ to 5’ on the template strand
• RNA Polymerase unwinds the DNA strands and
• Adds ribonucleotides complementary to the template in 5’ to 3’
direction
2. Elongation
3. Termination
◦ Bacteria has to methods for transcription
termination
◦ Rho-independent termination and Rho-
dependent termination
◦In Rho independent transcription
termination, also called intrinsic termination,
RNA transcription stops when the newly
synthesized RNA molecule forms a G-C-
rich hairpin loop followed by a run of Us
◦In the "Rho-dependent" type of termination,
a protein factor called "Rho" destabilizes the
interaction between the template and the
mRNA, thus releasing the newly synthesized
mRNA from the elongation complex
Rho- independent termination Rho-dependent termination
EUKARYOTIC
TRANSCRIPTION
◦ Initiation step involves additional factors
called as transcription factors: basal and
regulatory
THE GENE CONTROL REGION OF A TYPICAL
EUKARYOTIC GENE
1. Coupled transcription and translation 1. Coupled transcription and translation not possible
2. Occurs in the cytoplasm 2. Occurs in the nucleus
3. A single RNA polymerase synthesizes all three 3. The RNA polymerases I, II, and III synthesizes rRNA,
types of rna: mRNA, tRNA and rRNA mRNA and tRNA respectively
4. RNAs are released and processed in the cytoplasm 4. RNAs are released and processed in the nucleus
5. Transcriptional unit has one or more than one gene 5. Transcriptional unit has only one gene (monocistronic)
(polycistronic) 6. The 28S, 18S, 5.8S and 5S rRNAs are formed from
6. The 23S, 16S and 5S rRNA are formed from single two primary transcripts
primary transcript
POST TRANSLATIONAL
MODIFICATIONS IN
EUKARYOTES
◦5’ end capping
Intron – non-coding part of gene
Exon – coding region
◦EUKARYOTIC GENE
◦ What is epigenetics? - Carlos Guerrero-Bosagna
Translation is the synthesis of polypeptides on ribosomes
Translation is the process of protein synthesis in which the genetic information encoded in
mRNA is translated into a sequence of amino acids in a polypeptide chain
http://www.nature.com/scitable/topicpage/ribosomes-transcription-and-translation-14120660
TRANSLATION
Translation animati
on
◦ mRNA binds to ribosome
◦ Accompanying translation factors
◦ Energy needed
◦ hydrolysis of GTP (movement of
ribosome along mRNA)
◦ ATP (aminoacylation of tRNA and
untangling of mRNA)
◦ Bacterial cell uses 90% of its ATP
for translation process
INITIATION
• Different codons can translate for the same amino acid (e.g. GAU and GAC both translate for Aspartate) therefore
the genetic code is said to be degenerate
• The order of the codons determines the amino acid sequence for a protein
• The coding region always starts with a START codon (AUG) therefore the first amino acid in all polypeptides is
Methionine
• The coding region of mRNA terminates with a STOP codon - the STOP codon does not add an amino acid –
instead it causes the release of the polypeptide
◦ Exceptions:
- UGA STOP codon / in the mitochondria coding Trp
- AGG, AGA encode arginine / in mitochondria STOP codon
OPEN READING FRAME
ORF1 5’-AUG ACU AAG AGA UCC GG-3’
Met Thr Lys Arg Ser
ORF2 5’-A UGA CUA AGA GAU CCG G-3’
Stop Leu Arg Asp Pro
ORF3 5’-AU GAC UAA GAG AUC CGG-3’
Asp Stop Glu Ile Arg
Use a table of the genetic code to deduce which codon(s) corresponds to which amino acid.
Use a table of the genetic code to deduce which codon(s) corresponds to which amino acid
http://learn.genetics.utah.edu/co
ntent/basics/transcribe/
Use a table of the genetic code to deduce which codon(s) corresponds to which amino acid
◦ What is a protein?
Production of human insulin in Bacteria as an example of the universality of the genetic code
allowing gene transfer between species
Despite the differences in the amino acid sequence between animal and
human insulin, they all bind to the human insulin receptor and cause
lowering of blood glucose concentration. However, some diabetics
develop an allergy to animal insulins, so it is preferable to use human
insulin. In 1982 human insulin became commercially available for the
first time. It was produced using genetically modified E. coli bacteria.
Since then, methods of production have been developed using yeast
cells and more recently safflower plants.
https://en.wikipedia.org/wiki/File:Inzul%C3%ADn.jpg
Production of human insulin in bacteria as an example of the universality of the genetic code
allowing gene transfer between species
• All living things use the same bases and the same genetic code
• Each codon produces the same amino acid in transcription and translation, “The
regardless of the species
• So, the sequence of amino acids in a polypeptide remains unchanged Genetic Code
• Therefore, we can take genes from one species and insert them into the
genome of another species is Universal”
restriction