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Catalyst
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Catalysts increase product formation by
(1) lowering the energy barrier (activation energy) for the product to form
(2) increases the favorable orientation of colliding reactant molecules for
product formation to be successful (stabilize transition state intermediate)
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Catalytic Power
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Specificity
• Enzymes selectively recognize proper
substrates over other molecules
• Enzymes produce products in very high
yields - often much greater than 95%
• Specificity is controlled by structure - the
unique fit of substrate with enzyme
controls the selectivity for substrate and
the product yield
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Classes of enzymes
1. Oxidoreductases = catalyze oxidation-reduction reactions
(NADH)
2. Transferases = catalyze transfer of functional groups
from one molecule to another.
3. Hydrolases = catalyze hydrolytic cleavage
4. Lyases = catalyze removal of a group from or addition of
a group to a double bond, or other cleavages involving
electron rearrangement.
5. Isomerases = catalyze intramolecular rearrangement.
6. Ligases = catalyze reactions in which two molecules are
joined.
Enzymes named for the substrates and type of reaction
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PROSTHETIC GROUPS
• Many enzymes contain small nonprotein
molecules and metal ions that participate
directly in substrate binding or catalysis.
Termed prosthetic groups, cofactors, and
coenzymes.
• Prosthetic groups are distinguished by their
tight, stable incorporation into a protein’s
structure by covalent or noncovalent forces e.g.
pyridoxal phosphate, flavin mononucleotide
(FMN), flavin dinucleotide (FAD), thiamin
pyrophosphate, biotin, and the metal ions of Co,
Cu, Mg, Mn, Se, and Zn (metalloenzymes).
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COFACTORS
• They bind in a transient, dissociable manner
either to the enzyme or to a substrate such as
ATP.
• Three dimensional
• Small part of the enzyme
• Cleft or crevices
• Bound to substrate through multiple weak
interaction
• Specificity depends on spatial arrangement
of atoms within the active site
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Enzyme Inhibition
• Inhibitor – substance that binds to an enzyme and
interferes with its activity
• Can prevent formation of ES complex or prevent ES
breakdown to E + P.
• Irreversible and Reversible Inhibitors
• Irreversible inhibitor binds to enzyme through covalent
bonds (binds irreversibly)
• Reversible Inhibitors bind through non-covalent interactions
(disassociates from enzyme)
• Why important?
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Reversible Inhibitors
E + S <-> ES -> E + P
E + I <-> EI
Ki = [E][I]/[EI]
• Competitive
• Uncompetitive
• Non-competitive
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Types of Reversible Enzyme Inhibitors
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Introduction to Metabolism
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Metabolism
Metabolism consists of catabolism and
anabolism
Catabolism: degradative pathways
– Usually energy-yielding!
Anabolism: biosynthetic pathways
– energy-requiring!
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Catabolism and Anabolism
Catabolic pathways converge to a few
end products
Anabolic pathways diverge to
synthesize many biomolecules
Some pathways serve both in
catabolism and anabolism
Such pathways are amphibolic
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Organization in Pathways
Pathways consist of sequential steps
The enzymes may be;
• separate
• Or may form a multienzyme complex
• Or may be a membrane-bound system
Separate
enzymes
Membrane
Bound System
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Organization of Pathways
Closed Loop
(intermediates recycled)
Linear Spiral
(product of rxns are (same set of
substrates for enzymes used
subsequent rxns) repeatedly)
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Metabolism Proceeds in Discrete
Steps
Enzyme specificity defines
biosynthetic route
Controls energy input and
output
Allow for the establishment of
control points.
Allows for interaction between
pathways
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Regulation of Metabolic Pathways
• Pathways are regulated to allow the organism to
respond to changing conditions.
• Most regulatory response occur in millisecond
time frames.
• Most metabolic pathways are irreversible under
physiological conditions.
• Regulation ensures unidirectional nature of
pathways.
• Flow of material thru a pathway is referred to
as flux.
• Flux is regulated by supply of substrates,
removal of products, and activity of enzymes
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Enzyme Regulation of Flux
Common mechanisms
• feedback inhibition – product of pathway down
regulates activity of early step in pathway
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CARBOHYDRATE METABOLISM AND
DISORDERS
• The main function of glucose is a major tissue energy
source through the glycolytic pathway and the kreb’s
cycle.
• The brain depends on extracellular glucose concentration
for its energy therefore in situations of low glucose
levels, there is impaired cerebral function which may even
lead to an irreversible neuronal damage.
• The brain cannot:
– Synthesize glucose
– Store significant amounts of glucose
– Metabolize substrates other than glucose and ketones
– Extract enough glucose from ECF at low concentrations for its
metabolic needs
Blood glucose homeostasis
Glucose enters the blood through
• Dietary carbohydrates
• Gluconeogenesis
• Hepatic glycogenolysis
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Rx1: Hexose Kinase
• 1st step in glycolysis; G large, negative
• This is a priming reaction - ATP is consumed here
in order to get more later
• ATP makes the phosphorylation of glucose
spontaneous
• Require Mg/Mn as cofactor
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Hexokinase also functions in other processes
Directing glucose to
other pathways33
Different Hexokinase Isozymes
• Two major forms hexokinase (all cells) &
glucokinase (liver)
• Km for hexokinase is 10-6 to 10-4 M; cell has 4
X 10-3 M glucose
• Km for glucokinase is 10-2 M only turns on when
cell is rich in glucose
• Glucokinase functions when glucose levels are
high to sequester glucose in the liver.
• Hexokinase is regulated - allosterically
inhibited by (product) glucose-6-P
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Rx 3: Phosphofructokinase
PFK is the committed step in glycolysis!
• The second priming reaction of glycolysis
• Committed step and large, -DG – means PFK is highly
regulated
• b-D-fructose-6-phosphate is substrate for rxn
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Phosphofructokinase is highly regulated
• ATP inhibits, AMP reverses inhibition
• Citrate is also an allosteric inhibitor
• Fructose-2,6-bisphosphate is allosteric
activator
• PFK increases activity when energy status is
low
• PFK decreases activity when energy status is
high
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Rx 6: Glyceraldehyde-3P-Dehydrogenase
• G3P is oxidized and phosphorylated to 1,3-BPG
• Near equilibrium rxn
• Pi is used as phosphate donor
• C1 phosphoryl group has high group transfer potential,
used to phosphorylate ADP to ATP in next step of
glycolysis
• Arsenate can replace phosphate in rxn (results in lower
ATP)
• NADH generated in this reaction is reoxidized by
respiratory electron transport chain (generates ATP)
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Rx 7: Phosphoglycerate Kinase (PGK)
• ATP synthesis from a high-energy phosphate
• This is referred to as "substrate-level
phosphorylation"
• Although has large negative DGo’ (-18 kJ/mole) because
PGK operates at equilibrium in vivo, the overall DG is 0.1
Kj/mole and is a near-equilibrium rxn.
• 2,3-BPG (for hemoglobin) is made by circumventing the
PGK reaction
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Rx 9: Enolase
• Near equilibrium rxn
• "Energy content" of 2-PG and PEP are similar
• Enolase just rearranges to a form from which
more energy can be released in hydrolysis
• Requires Mg2+ for activity, one bings Carboxyl
group of substrate the other involved in catalysis.
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Rx 10: Pyruvate Kinase
• Substrate level phosphorylation generates
second ATP
• Require Mg/Mn/K
• Large, negative G - regulation!
• Allosterically activated by AMP, F-1,6-bisP
• Allosterically inhibited by ATP, long chain
FA, citrate and acetyl-CoA
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Pyruvate can go in three major
directions after glycolysis
• Under aerobic conditions pyruvate is oxidized to
Acetyl-CoA which can enter Citric acid (TCA)
cycle.
• Under anaerobic conditions pyruvate can be
reduced to ethanol (fermentation) or lactate
• Under anaerobic conditions formation of ethanol
and lactate is important in the oxidization NADH
back to NAD+
• Under aerobic conditions NADH is oxidized to
NAD+ by the respiratory electron transport chain.
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Lactate formation
NADH NAD
O OH
O O
H3C C C H3C C C
H
O O
NADH NAD
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Fructose Intolerance
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Galactosemia
• Inherited as an autosomal recessive
• Deficiency of galactose-1- phosphate
uridylytransferase.
• galactose-1-phosphate accumulates
• Leads to liver damage, GIT, Kidney
and brain
• Untreated infants fail to thrive often
have mental retardation.
• Can be treated with galactose free
diet.
Cataracts
• Accumulation of galactose in the blood
and subsequent spillage in urine and
other tissue
• In the lens of the eye, galactose is
change to a polyol (galactitol/dulcitol)
by galactose reductase
• Gal +NADPH +H → Galactitol + NADP+
• Accumulation of dulcitol in the lens
damage tissue via opacification i.e.
cataracts
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Lactose Intolerance
• Humans undergo reduction in lactase at 5
to 7 years of age.
• In lactase deficient individuals, lactose is
metabolized by bacteria in the large
intestine.
• Produce CO2, H2 and short chain acids.
• Short chain acids cause ionic imbalance in
intestine (diarrhea)
Control Points in
Glycolysis
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Deregulation of Glycolysis in Cancer
Cells
• Glucose uptake and glycolysis is ten times faster in
solid tumors than in non-cancerous tissues.
• Tumor cells initally lack connection to blood supply
so limited oxygen supply
• Tumor cells have fewer mitochondrial, depend more
on glycolysis for ATP
• Increase levels of glycolytic enzymes in tumors
(oncogene Ras and tumor suppressor gene p53
involved)
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2. Gluconeogenesis
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Gluconeogenesis
• Synthesis of "new glucose" from common
metabolites (pyruvate, lactate, citric acid cycle
intermediates, amino acids other than lysine or
leucine, and glycerol)
• Humans consume 160 g of glucose per day
• 75% of that is in the brain
• Body fluids contain only 20 g of glucose
• Glycogen stores yield 180-200 g of glucose
• The body must still be able to make its own
glucose
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Gluconeogenesis
• Occurs mainly in liver and kidneys
• Not the mere reversal of glycolysis
for 2 reasons:
– Energetics must change to make
gluconeogenesis favorable
– Reciprocal regulation must turn one on
and the other off - this requires
something new!
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• Seven steps of glycolysis
are retained
• Three steps are replaced
• The new reactions
provide for a
spontaneous pathway (G
negative in the direction
of sugar synthesis), and
they provide new
mechanisms of regulation
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Pyruvate Carboxylase
• The reaction requires ATP and bicarbonate as
substrates
• Biotin cofactor
• Acetyl-CoA is an allosteric activator
• Regulation: when ATP or acetyl-CoA are high,
pyruvate enters gluconeogenesis
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PEP Carboxykinase
• Lots of energy needed to drive this reaction!
• Energy is provided in 2 ways:
– Decarboxylation is a favorable reaction
– GTP is hydrolyzed
• GTP used here is equivalent to an ATP
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Fructose-1,6-bisphosphatase
• Thermodynamically favorable - G
in liver is -8.6 kJ/mol
• Allosteric regulation:
– citrate stimulates
– fructose-2,6--bisphosphate inhibits
– AMP inhibits
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Glucose-6-Phosphatase
• Presence of G-6-Pase in ER of liver and kidney cells
makes gluconeogenesis possible
• Muscle and brain do not do gluconeogenesis
• G-6-P is hydrolyzed as it passes into the ER
• ER vesicles filled with glucose diffuse to the plasma
membrane, fuse with it and open, releasing glucose
into the bloodstream.
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•Metabolites other than
pyruvate can enter
gluconeogenesis
•Lactate (Cori Cycle)
transported to liver for
gluconeogenesis
•Glycerol from
Triacylglycerol catabolism
•Pyruvate and OAA from
amino acids
(transamination rxns)
•Malate from glycoxylate
cycle -> OAA ->
gluconeogenesis
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Regulation of Gluconeogenesis
• Reciprocal control with glycolysis
• When glycolysis is turned on, gluconeogenesis
should be turned off
• When energy status of cell is high, glycolysis
should be off and pyruvate, etc., should be
used for synthesis and storage of glucose
• When energy status is low, glucose should be
rapidly degraded to provide energy
• The regulated steps of glycolysis are the
very steps that are regulated in the reverse
direction!
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Glycogenesis
(synthesis of glycogen)
Metabolism of Tissue Glycogen
• Glycogen, a branched polymer of glucose, represents
a storage form of glucose
• Glycogen metabolism occur primarily in liver &
skeletal muscle. Cardiac muscle and the kidney, store
smaller quantities
• Glycogens stored in the cytoplasm as either single
granules (skeletal muscle) or as clusters of granules
(liver)
Glucokinase
Glycogen Synthase
• Forms -(1 4) glycosidic bonds in glycogen
Non-oxidative
Stage
Regulatory enzyme
5 carbon atoms
Glutathione and NADPH
• What is glutathione?
• Why is it important?
• How is it related to NADPH?
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Glutathione Functions -1
• It serves as a reductant.
• Conjugates to drugs making them
water soluble.
• Involved in amino acid transport
across cell membranes.
• Cofactor in some enzymatic
reactions.
– rearrangement of protein disulfide
bonds.
Glutathione Functions -2
• Interesting
– The growth Plasmodium falciparum (malaria
parasite) fails in G6PD deficient individuals.
Gylcolysis
TCA Cycle
Pancreatic Anatomy and Function
Increase glycogenesis
In the liver, insulin does not affect glucose
transport directly (as it does in muscle and fat),
but promotes glucose uptake by stimulating its
storage as glycogen through the action of
glycogen synthase.
• During prolonged starvation KBs are the major source of fuel for
brain and other parts of CNS. After the diet has been changed to
lower blood glucose for 3 days, the brain gets 25% of its energy
from ketone bodies. After about 40 days, this goes up to 70%, but
can not utilize FA.
1. Formation of Citrate by
Citrate Synthase
2. Citrate to Isocitrate by
Aconitase
3. Isocitrate to alpha-
ketoglutarate by Isocitrate
Dehydrogenase
4. Alpha ketoglutarate to
Succinyl-coA by Alpha
ketoglutarate
Dehydrogenase
5. Succinyl-coA to Succinate
by Succinyl-coA synthetase
6. Succinate to Fumarate by
Succinate Dehydrogenase
7. Fumarate to Malate by
Fumarase
8. Malate to Oxaloacetate by
Malate Dehydrogenase
Stepwise synthesis of Ketone bodies
TYPES OF DM
• Two classes of diabetes: IDDM and NIDDM
TYPE 1
It is also called insulin-dependent diabetes. It used to be called
juvenile-onset diabetes.
Risk factors for type 1 diabetes may include autoimmune, genetic, and
environmental factors.
Clinical and metabolic features of dm type 1
• Hyperglycaemia
• Diabetes ketoacidosis
• Coma
• Hypoglycaemia
Diabetes ketoacidosis
• Blood glucose conc. 20-40 mmol/l
• Developed in diabetics as a result of insufficient/ interruption
of insulin therapy.
Symptoms include:
• Excessive thirst
• Nausea and vomiting
• Frequent urination
• Abdominal pain
• Weakness or fatigue
• Shortness of breath
• Fruity-scented breath
• Confusion
• High blood sugar level (hyperglycemia)
• High ketone levels in your urine
Causes of DKA
• Diabetic ketoacidosis is usually triggered by:
• A problem with insulin therapy. Missed insulin treatments
or inadequate insulin therapy can result in too little insulin in
the body, triggering diabetic ketoacidosis.
1. Insulinoma
2. Glucagon deficiency
• Blood glucose
Anti-Diabetic Drugs
• Insulin administration
Sulphonylureas
• • These drugs were discovered by chance when it was noted that a
sulphonamide derivative used for treating typhoid, caused marked
hypoglycaemia
Examples include glibenclamide and chlorpropamide.
Biguanides
• • Improves insulin sensitivity by increasing glucose utilisation by skeletal
muscle and also decreases hepatic gluconeogenesis.
• Metformin is the most widely known and used drug in this class and is
frequently prescribed to overweight patients as it also promotes weight loss.