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ISSN 1463-9076
COVER ARTICLE
Alonso and Herradn
Substituent effects on the aromaticity
of carbocyclic five-membered rings
PERSPECTIVE
Ashfold et al.
* excited states in molecular
photochemistry
1463-9076(2010)12:6;1-S
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PAPER
Introduction
An important objective of modern Chemistry is to predict
behaviour that in turn helps to design useful materials.1
To achieve this goal, a deep structural knowledge is
necessary.2 Structureproperty relationships are key concepts
that are extremely useful to rationalize dierent chemical,
physical, biological and technological properties.3 Aromaticity
is a phenomenon exhibited by many organic compounds
and it relates energetic stabilization to cyclic p-electron
delocalization.47 Aromaticity refers to the existence of some
properties similar to those of benzene such as: energetic
stabilization; bond length equalization; a particular reactivity;
and characteristic spectroscopic and magnetic properties
related to strong, induced diamagnetic ring currents.810
Additionally, this concept has been used to justify or even
predict the stability and reactivity of inorganic compounds11
and has guided the design of new materials, such as spherical
Instituto de Qumica Organica General, C.S.I.C., Juan de la Cierva 3,
28006 Madrid, Spain. E-mail: mercuea@iqog.csic.es,
herradon@iqog.csic.es; Fax: 34 915644853; Tel: 34 915618806
w Electronic supplementary information (ESI) available: Fig. S1 and
Table S1 show the interrelation between NICSzz(1) values calculated at
the geometrical ring center and those evaluated at the ring critical
point; Fig. S2S4 display the bond lengths of the optimized geometries
of substituted cyclopentadienyl compounds; Fig. S5S7 show the
variation of the Euclidean distance values with the number and
position of substituents; Fig. S8S10 show the NICS scan proles of
some derivatives; Tables S2S4 include the Cartesian coordinates,
total energies and magnetic susceptibilities of all compounds. See
DOI: 10.1039/b917343a
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divergence has led to much debate on the statistical multidimensionality of aromaticity;14,32 this issue is discussed below
and elsewhere.33
Recently, we have reported that articial neural networks
(ANNs) are useful tools to classify organic compounds into
aromatic/non-aromatic/antiaromatic.33 Besides the qualitative
ordering into the three groups, the self-organizing map
(SOM)34 is able to quantify the aromaticity of a comprehensive
set of ve-membered rings through the Euclidean distance
between neurons. Since several energetic and magnetic indices
of aromaticity have been used as molecular descriptors in the
neural network, the Euclidean distance is the rst scale
of aromaticity which takes into account these dierent
manifestations of the aromaticity.35 Unsupervised neural
networks like self-organizing maps are able to apprehend
complex and non-linear relationships between dierent
descriptors. This feature is important to apply the method to
a large variety of compounds, including those with dierent
substituents or dierent ring sizes. In a very recent article, we
have applied the SOM to establish a universal scale of global
aromaticity for p-organic compounds.36
The main objective of this research was to study systematically the inuence of the substituent on the aromaticity/
antiaromaticity of a large set of derivatives of cyclopentadienyl
anion (Cp), cyclopentadiene (Cp) and cyclopentadienyl
cation (Cp+) using self-organizing maps. To this end, we have
chosen four substituents (CH3, OH, F, CN) that cover the
main electronic eects such as electron-donating and withdrawing resonance eects, electron-donating and withdrawing
inductive eects as well as hyperconjugative eect (see Table 1
for the substituent constants).37,38 Additionally, we have
analyzed the eect of the number and position of the
substituent on aromaticity. The study of the substituent eect
on chemical properties is a long topic in physical organic
chemistry.39,40 However, only a few systematic studies on the
relation between the substituent eect and aromaticity have
been carried out, mostly on benzene derivatives.4143
Computational details
L = wM wM 0
Substituent
s+/sb
smc
spc
sR1d
R+/Rd
OH
CH3
H
F
CN
0.92
0.31
0.00
0.03
1.00
0.12
0.06
0.00
0.34
0.56
0.37
0.17
0.00
0.06
0.91
0.40
0.10
0.00
0.34
0.09
1.25
0.32
0.00
0.52
0.49
a
Data were taken from ref. 43. b s+ and s are complex substituent
constants that contain both inductive and mesomeric eects for
electron-donating and electron-accepting substituents, respectively.
c
sm and sp are the Hammetts constants and are quantied from
the ionization constants of meta- or para-substituted benzoic acids.
Whereas sm is a eld inductive parameter, sp takes into account both
eects. d sR1, R+ and R are resonance parameters.
(1)
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Scheme 1 Homodesmotic reactions used to evaluate the aromatic stabilization energies (ASE) and magnetic susceptibility exaltation (L) of
substituted cyclopentadienyl compounds.
n
aX
Ropt Ri 2
n i1
m
X
xpi wji 2
i1
Fig. 1 Substituted cyclopentadienyl compounds included in the study of the substituent eect.
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Table 2 Calculated ASE (kcal mol1), L (ppm cgs), NICS, NICS(1) and NICSzz(1) (ppm), HOMA and dj for substituted cyclopentadienyl anions
Erela
N1
C5H5
Cp
22,32,52,3,42,3,52,3,4,5Mean
Esd.
1
2
3
4
5
6
22,32,52,3,42,3,52,3,4,5Mean
Esd.
7
8
9
10
11
12
22,32,52,3,42,3,52,3,4,5Mean
Esd.
13
14
15
16
17
18
22,32,52,3,42,3,52,3,4,5Mean
Esd.
19
20
21
22
23
24
0.00
0.67
0.00
0.56
0.00
0.51
0.00
0.09
2.96
0.00
2.38
0.00
1.45
0.00
0.80
0.00
ASE
NICS
NICS(1)
NICSzz(1)
HOMA
dj
22.05
10.13
10.25
35.98
0.740
13.1
7.66
4.07
5.42
0.50
3.73
1.01
4.36
3.86
13.99
CH3
13.12
13.15
12.30
12.86
12.31
12.71
12.92
0.58
20.32
18.57
18.60
16.80
16.88
15.03
18.32
2.35
9.66
9.80
9.05
9.62
9.28
9.59
9.61
0.38
32.54
32.03
29.56
30.17
28.63
28.68
31.08
2.65
0.736
0.732
0.731
0.724
0.726
0.715
0.729
0.008
14.3
18.1
16.4
21.0
18.9
22.9
17.8
3.5
16.53
14.06
13.77
11.33
10.37
3.00
13.01
5.86
7.78
6.70
6.10
3.53
3.96
3.27
5.93
2.53
OH
15.33
17.71
16.95
19.98
18.96
20.23
17.59
2.35
9.64
9.89
9.13
10.05
9.34
10.44
9.82
0.48
32.35
30.77
29.09
29.08
27.08
22.88
29.60
4.12
0.760
0.786
0.773
0.793
0.803
0.820
0.782
0.027
17.8
20.1
20.5
24.2
25.6
33.1
22.1
6.4
18.46
17.49
15.26
16.59
13.57
11.31
16.39
3.48
8.58
7.19
7.23
4.56
5.62
4.22
6.79
2.15
F
16.69
20.25
19.66
23.80
22.98
26.68
20.58
4.34
10.00
10.55
9.90
11.17
10.53
11.86
10.61
0.69
32.92
31.90
30.29
30.93
29.12
29.24
19.96
2.27
0.776
0.827
0.799
0.848
0.855
0.890
0.819
0.051
15.5
17.2
19.4
19.3
20.7
24.2
18.5
3.6
25.82
19.61
26.66
9.15
18.94
8.83
17.26
6.92
7.47
7.53
6.09
8.16
6.68
7.81
7.83
1.13
CN
14.58
15.49
15.35
16.45
16.25
17.30
15.48
0.99
10.48
10.88
10.62
11.10
10.89
11.28
10.75
0.31
14.38
12.76
11.93
29.81
29.07
28.54
31.10
2.14
0.733
0.735
0.736
0.724
0.745
0.729
0.735
0.006
10.3
15.7
9.9
24.8
16.3
25.3
16.5
6.3
Erel is the relative energies (in kcal mol1) for the position isomers.
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ASE
L
NICS
NICS(1)
NICSzz(1)
HOMA
dj
NICS
ASE
1
0.292
0.476b
0.124
0.726a
0.406b
0.977a
1
0.009
1
0.254
0.588a 1
a
0.555 0.292 0.013
0.053 0.943a 0.370
0.466b 0.428b 0.096
1
0.245
0.781a
1
0.366
b
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Fig. 2 Self-organizing map obtained for the classication of p-organic compounds according to their degree of aromaticity. Neurons are coloured
based on the Euclidean distance between the weight vector of each neuron and the neuron activated by benzene. Substituted cyclopentadienyl
anions and cyclopentadienes are indicated by the position of the substituent in the ring and the substituent. As comparative purposes, some
heterocycles used in the network training and benzene are shown.
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Table 4
Calculated ASE (kcal mol1), L (ppm cgs), NICS, NICS(1) and NICSzz(1) (ppm), HOMA and dj for substituted cyclopentadienes
CH3
N1
C5H6
Cp
232,32,43,42,52,3,42,3,52,3,4,5Mean
Esd
25
26
27
28
29
30
31
32
33
232,32,43,42,52,3,42,3,52,3,4,5Mean
Esd
Erela
ASE
NICS
HOMA
dj
4.82
11.83
0.778
41.5
1.12
0.71
1.58
1.62
0.73
2.25
1.54
2.66
2.58
1.48
0.86
4.03
4.79
4.12
3.99
4.84
3.37
4.19
3.41
3.57
4.11
0.56
8.86
10.78
8.14
7.86
10.15
5.32
7.60
5.42
5.06
8.10
2.37
0.789
0.820
0.875
0.885
0.848
0.912
0.904
0.903
0.957
0.867
0.057
43.4
42.0
44.1
44.1
42.3
46.4
44.5
46.4
46.4
44.1
1.9
1.96
1.31
3.51
2.60
2.16
6.75
2.96
7.93
6.45
3.56
2.61
1.09
0.55
1.41
0.90
0.64
1.85
0.12
1.89
1.36
0.85
0.83
OH
3.35
5.51
6.20
6.05
8.57
4.31
9.74
7.10
10.86
6.49
2.61
3.45
4.84
4.14
3.67
5.31
2.57
4.62
3.25
4.57
4.12
0.86
6.87
10.34
6.87
6.11
10.22
2.86
6.87
3.06
4.14
6.92
3.10
0.776
0.801
0.754
0.797
0.889
0.912
0.807
0.910
0.853
0.828
0.059
45.2
42.7
46.3
46.3
43.5
51.2
45.7
52.4
50.5
46.7
3.5
1.20
0.00
4.39
0.00
1.37
2.11
0.16
0.00
2.47
1.27
3.73
3.77
5.14
5.88
7.67
7.51
11.73
4.92
3.46
0.85
0.26
0.87
0.03
0.27
0.81
0.32
0.41
0.24
0.34
0.46
F
4.31
6.35
8.25
7.93
10.03
6.25
12.17
10.15
14.28
8.29
3.45
3.88
4.92
4.54
4.24
5.37
3.37
5.14
4.12
5.07
4.55
0.63
7.62
10.65
7.53
7.30
10.44
4.44
7.83
4.61
5.28
7.75
2.57
0.764
0.798
0.714
0.789
0.889
0.816
0.809
0.765
0.800
0.783
0.059
45.2
42.7
46.0
46.0
45.7
50.0
49.5
50.7
53.7
47.1
3.8
0.00
1.37
1.74
2.00
3.55
0.00
1.76
0.00
0.16
1.22
0.76
3.67
5.21
1.67
6.64
4.88
9.43
3.33
3.18
0.27
0.48
0.21
0.39
0.80
0.25
0.45
0.31
0.27
0.34
0.21
CN
4.15
4.25
5.16
5.17
5.16
5.08
6.05
6.03
6.84
5.11
1.06
5.22
5.13
5.44
5.41
5.32
5.50
5.57
5.63
5.77
5.38
0.27
11.15
11.31
10.69
10.43
10.64
10.40
9.94
9.82
9.21
10.54
0.77
0.713
0.754
0.691
0.706
0.732
0.649
0.687
0.646
0.660
0.702
0.044
41.6
42.2
42.1
45.0
45.7
43.2
47.9
45.9
49.7
44.7
2.7
0.00
0.25
0.00
0.95
0.59
0.00
0.92
0.00
0.65
0.73
0.48
0.97
1.09
0.50
1.41
1.11
1.76
1.66
0.97
0.56
34
35
36
37
38
39
40
41
42
0.64
0.00
3.91
0.44
0.00
4.60
0.00
4.97
232,32,43,42,52,3,42,3,52,3,4,5Mean
Esd
43
44
45
46
47
48
49
50
51
232,32,43,42,52,3,42,3,52,3,4,5Mean
Esd
52
53
54
55
56
57
58
59
60
Erel is the relative energies (in kcal mol1) for the position isomers.
Table 5
ASE
L
NICS
NICS(1)
NICSzz(1)
HOMA
dj
a
NICSzz(1)
3.18
CH3
2.17
3.03
2.16
2.00
2.95
1.17
2.09
1.34
1.27
2.14
0.74
0.00
NICS(1)
ASE
NICS
NICS(1)
NICSzz(1)
HOMA
dj
1
0.173
0.725a
0.067
0.464a
0.109
0.416b
1
0.616a
0.750a
0.576a
0.540a
0.306a
1
0.347b
0.167
0.191
0.502a
1
0.784a
0.640a
0.100
1
0.511a
0.188
1
0.060
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Table 6 Calculated ASE (kcal mol1), L (ppm cgs), NICS, NICS(1) and NICSzz(1) (ppm), HOMA and dj for substituted cyclopentadienyl cations
Erela
N1
C5H5
Cp
22,32,52,3,42,3,52,3,4,5Mean
Esd
61
62
63
64
65
66
22,32,52,3,42,3,52,3,4,5Mean
Esd
67
68
69
70
71
72
22,32,52,3,42,3,52,3,4,5Mean
Esd
73
74
75
76
77
78
22,32,52,3,42,3,52,3,4,5Mean
Esd
79
80
81
82
83
84
14.0
0.0
26.9
0.0
13.2
0.0
12.4
0.0
4.0
0.0
3.8
0.0
NICS
NICS(1)
NICSzz(1)
HOMA
dj
57.88
35.54
44.78
50.56
36.50
51.47
40.83
48.27
47.18
7.14
21.16
25.43
14.46
17.85
16.27
18.63
21.33
7.20
51.32
CH3
34.00
39.32
27.87
30.58
29.33
32.27
34.96
8.12
35.57
112.21
1.152
170.6
21.04
25.59
15.77
17.95
16.98
19.20
21.73
6.90
69.10
83.56
54.57
63.22
58.56
67.24
72.64
19.75
0.982
1.454
1.047
1.083
1.207
1.089
1.145
0.154
131.1
146.5
113.2
132.3
122.7
132.2
135.5
18.5
22.74
39.39
1.76
65.40
12.29
36.57
33.72
23.20
13.61
17.50
7.86
20.30
7.87
11.26
16.28
9.68
OH
20.85
24.21
13.20
24.95
10.66
11.78
22.42
14.05
11.77
16.02
7.31
18.59
6.77
9.35
15.05
10.05
40.95
54.47
28.57
63.67
28.03
38.05
52.28
29.46
0.824
0.720
0.694
0.893
0.544
0.491
0.760
0.224
99.6
116.1
72.6
137.5
78.0
101.7
110.9
34.3
36.99
48.25
22.64
54.36
29.22
43.15
41.78
12.96
19.96
22.94
14.47
21.17
14.37
16.88
20.76
7.30
F
29.86
39.32
21.78
24.57
18.36
17.85
29.01
12.35
19.02
25.59
14.22
18.73
13.18
14.70
20.14
8.00
62.45
83.56
48.55
64.19
46.50
53.09
67.22
23.45
0.952
1.073
0.778
0.846
0.852
0.838
0.927
0.138
122.7
146.5
101.4
134.4
103.3
116.1
127.9
24.8
52.38
53.51
44.52
46.28
40.12
44.62
48.47
6.25
32.69
31.42
29.73
29.01
28.06
29.63
30.87
2.57
CN
47.44
45.68
41.78
41.48
38.84
42.02
44.08
4.28
32.93
32.16
28.79
29.34
27.22
30.51
30.93
2.83
104.78
104.61
92.50
96.34
88.78
101.09
100.05
8.06
1.129
0.879
0.971
0.920
1.093
0.889
1.005
0.117
167.8
167.8
153.8
156.1
149.7
160.6
160.9
8.0
Erel is the relative energies (in kcal mol1) for the regioisomers.
Table 7
Correlation coecients between several descriptors of aromaticity for substituted cyclopentadienyl cations
ASE
L
NICS
NICS(1)
NICSzz(1)
HOMA
dj
a
7.3
0.0
3.7
0.0
ASE
ASE
NICS
NICS(1)
NICSzz(1)
HOMA
dj
1
0.719a
0.600a
0.681a
0.685a
0.377
0.694a
1
0.956a
0.992a
0.989a
0.576a
0.939a
1
0.980a
0.975a
0.694a
0.908a
1
0.998a
0.607a
0.941a
1
0.599a
0.948a
1
0.510a
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Conclusions
In this paper, the usefulness of articial neural networks in the
evaluation of aromaticity/antiaromaticity of a broad set of
organic compounds is demonstrated, completing our previous
results.33,36 It has been proven that the Euclidean distance
between neurons is a reliable method to quantify both aromaticity and antiaromaticity of cyclopentadienyl substituted
compounds and, moreover, it overcomes the particular
drawbacks of the ASE, L, NICS and HOMA indices to
describe the changes in the aromaticity of cyclopentadiene
ring due to the substituent eects. This method is eective
since it comprehend the most used aromaticity descriptors
being able to apprehend the non-linear relationships between
them as well as the multidimensional character of the
aromaticity, what clearly constitutes an advantage over a
single aromaticity descriptors or any linear combination of
the descriptors, which have been reported to be unsuccessful.
Our results show that the Euclidean distance is useful for
establishing structure-property relationships, a general goal of
organic chemistry. The use of a single aromaticity descriptor
should be avoid because they has been proven to fail in
quantifying the degree of p-electronic delocalization of several
substituted cyclopentadienyl compounds.
The systematic study of the inuence of the substituent on
the aromaticity of a variety of anionic, neutral and cationic
derivatives of cyclopentadiene using self-organizing maps has
led to the following conclusions:
(a) The aromaticity of the cyclopentadiene (Cp) and cyclopentadienyl anion (Cp) ring decreases upon substitution
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Acknowledgements
This work was taken in part from the PhD thesis of M. A. and
it was nancially supported by the Spanish Ministry of
Education and Science (CTQ2007-64891/BQU). We would
like to thank Dr A. Chana for helpful discussions on neural
networks. We thank Dr J. D. Guillen for helpful assistance on
statistical analyses. M. A. thanks MEC for a FPU fellowship.
We also thank the Centro de Supercomputacion de Galicia
(CESGA) for computational time at the SVGD supercomputer.
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Princeton University Press, Princeton, New Jersey, 1994.
2 As quoted by F. Crick, If you want to understand function, study
structure, F. Crick, What Mad Pursuit, A Personal View of
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