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Centrifugation:
20 Grams of refrigerated cauliflower was obtained and ground up with
40mL of Mannitol Grinding Buffer and then filtered. 2mL of this solution
was separated as F1 and the remaining was centrifuged (100x gravity
for 30 min. at 4o C). Two distinct layers were created after
centrifugation (pellet 1 or P1 and supernatant 1 or S1). P1 was placed
in ice with 8.0 mL of Mannitol Assay Buffer. 2mL of S1 was stored and
the rest was centrifuged (10,000 x gravity for 30 min. at 4oC). After
centrifugation, S1 formed 2 layers (pellet 2 or P2 and supernatant 2 or
S2). 8.0 mL of Mannitol Assay Buffer was added to P2
Microscopy:
One drop of each fraction (F1, S1, P1, S2, P2) was placed on the slide
with 1 or 2 drops of Azure C dye and observed under the microscope.
Pictures were taken of the observations.
Succinate Dehydrogenase (Part 1):
9 different cuvettes were obtained and each cuvette was filled with
different concentrations of various solutions (Assay Buffer, Azide, DCIP,
Malonate, and Succinate). 3 of the 9 were control cuvettes (Malonate,
Succinate, and Azide). The Spectrophotometer was set to 600 nm
wavelength and each of the cuvettes OD/ absorbance was measured
after the addition of 0.36 mL of the fraction samples. The OD was read
at 0 and 3 minutes intervals of the addition of the fraction sample to
each cuvette.
(Part 2):
10 new cuvettes were obtained and various concentrations of Mannitol
Assay buffer were added to each cuvette (P2, P2A, P2B, P2C, & S2).
Then 0.2 mL of DCIP and 0.2mL of Succinate were added to all the
cuvettes. The Spectrophotometer was set at 600 nm wavelength and
the absorbance values were observed for each of the cuvette after 0
and 3 minutes of adding the fraction samples from P2.
Calculating the Velocity of DCIP Reduction:
First the OD reading of 3 minutes and 0 minutes was found for each
sample fraction (Table 3 & 4). Then the found was divided by DCIP
extinction coefficient (21mM-1cm-1) to find the concentration of
DCIPreduced. Then the amount of the DCIPreduced was found by multiplying
the concentration found above with the volume of reaction. Finally, to
find the velocity, moles of DCIPreduced was divided by the reaction
time.
Results:
Table 3: OD absorbance of
Spectrophotometer
Sample
OD
Fraction
Reading: 0
Mins
Filtrate
0.519
S1
0.839
Concentrat
ion
(mM)
1.0086 * 10-4
Velocity (
moles/min
)
3.3619 * 10-
0.994
-2.603*10-6
P1
1.767
1.685
-7.8091 * 10
S2
0.776
0.585
-1.81905*10- -6.063*10-6
P2
Malonate
0.533
0.803
0.544
0.524
1.04762*10-6 3.4921*10-7
-2.65714*10- 5
2.65714*105
Succinate
0.463
0.425
-3.61905*10
6
-1.206*10-6
Azide
0.670
0.731
5.80952*10-6 1.9365*10-6
Table 3: As discussed in methods, various concentrations of
Mannitol Assay Buffer, Azide, DCIP, Malonate, Succinate, and
subcellular fractions were added to the cuvettes (Table 1). The
cuvettes were then placed in a spectrophotometer and the OD
was read at 0 minutes of adding the sample fractions and at 3
minutes.