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APPENDIX A.
THEORY OF CALCULATIONS
DATA PROCESSING AND CONVERSION
REACTION PROCESS AND MEASUREMENT POINTS
Measurements are taken at 9 second intervals over a 10 minute period. This results in
a maximum throughput of 400 photometric tests per hour. The F560 analyser has a 9
second cycle. During each cycle the system either adds sample, adds reagent, mixes
or takes a measurement. Measurements may be taken at one or two wavelengths,
depending on the assay specific chemistry parameters.
F560 Timeline
Measurement point
Time (seconds)
Measurement range 1
Measurement range 2
WATER BLANK
A water blank is performed on each cell during the washing process prior to R1
addition. This data is used to correct for cuvette variation and also to monitor the
degree of staining of the cuvettes.
ABSORBANCE DATA
Measurement details for each sample are defined on the Chemistry Parameters
menu (Parameter F6, Normal). Measurement conditions for each method are
different therefore samples should be corrected with a water blank.
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Absorbance of sample shows ABS1-68 for measurement points 1 to 68. The formula
for absorbance is as follows:
Primary wavelength: ABS1-68 = (S1-W1) 1-68
Secondary wavelength: ABS1-68 = (S2-W2) 1-68
Total wavelength: ABS1-68 = (S1-W1) 1-68 - (S2-W2) 1-68
MEASUREMENT PRINCIPLES
The system measures the standard sample, calculates absorbance differences
(ABS) from the reaction process (time course data), constructs the calibration curve
and converts to a concentration value based on the calibration curve data. Two assay
types are available, one is an end-point based method (END), the other is a ratebased method (RATE).
1
Xn + Xn
+1
2 2
2
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RATE METHOD
The variation of the reaction in a measurement point is approximated by primary
regression. Calculate the variation of the reaction between the measurement point 1
and measurement point 2.
Y = a + bX
(Y: Absorbance X: Time a : Intercept b : Slope)
The formula of slope b if the number of data points is n is as follows:
n
n n
n xi yi xi yi
i =1 i =1
b = i =1
2
n
n
2
n xi xi
i =1
i =1
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For methods 1 and 2 above, time-course data for the reagent blank and cuvette blank
is saved for each method. These values will be used to offset the absorbance during
measurement of test samples.
Method 3 is used when a one point offset is performed using saline as S1.
Using the above definitions, the time course calculation used to obtain the change in
absorbance (ABS) will be as follows:
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ABS
measurement range
Time
measurement range
ABS
dispensing of R2 Reagent
Time
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ABS
measurement range 2
measurement range 1
without R2 reagent
Time
ABS = The median value of measurement range 2 The median value of
measurement range 1
* (S+R1/S+R1+R2)
S: Sample volume
R1: R1 volume
R2: R2 volume
For a two shot, 2 step R2 assay.
measurement range 2
ABS
measurement range 1
dispensing of R2 Reagent
Time
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ABS
measurement range
dispensing
of R2 Reagent
Time
For a single step one shot assay method.
ABS
measurement range
Time
ABS
measurement range 1
measurement range 2
Dispensing
of R2 reagent
Time
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Linearity Check
Prozone Check
LINEARITY CHECK
The linearity of kinetic assays (RATE method) is calculated by measuring the
deviation of the reaction curve from linear behaviour. If the specified value is
exceeded, the system will show a LIN flag attached to the result indicating that the
sample has failed the linearity check.
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ABS1 + ABS2
Movingaverage1 = ---------------------------------------2
ABS2 + ABS3
Movingaverage2 = ---------------------------------------2
ABS ( n 1 ) + ABS ( n )
Movingaverage ( n 1 ) = ---------------------------------------------------------2
The slope of the moving average for points 1 to 3 will be calculated by regression
analysis.
This will be ABSfirst.
The slope of the moving average for the last 3 points (n-3) to (n-1) will be calculated
by regression analysis.
This will be ABSlast.
The slope of the moving average over the measurement range, 1 to (n-1) will be
calculated by regression analysis.
This will be ABSslope.
ABSlast- 100 %
LinearityLimit = ABSfirst
-------------------------------------------------------ABSslope
ABSslope
ABSlast
ABSfirst
1 1 2 3 4 5 6 7 8 9 10 11 12 13
34 14 15 16 17 18 19 20 21 22 23 24 25 26
68
Measurement range 1
Measurement range 2
Moving average
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Limit
3500 mAbs/10
ABS
Abs limit
Water blank value
Measuring range
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Limit
ABS
Abs limit
Measuring Range
Explanation
Flag
Result output
N/A
All points in
measuring range will
be used for
absorbance
calculation.
All points in
measuring range will
be used for
absorbance
calculation.
Points which are
within the limit will be
used for absorbance
calculation.
N/A
AB2
AB1
No result.
AB1
No result.
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Water Blank
Measurement range
The reaction progress of normal and out of range reactions (labels 1-5: see
preceeding table).
( ABS SL 2 F ABS SL 2 S ) ( t SL 2 F t SL 2 S )
P = ---------------------------------------------------------------------------------------------------------------------( ABS SL 1 F ABS SL 1 S ) ( t SL 1 F t SL 1 S )
SL1-S
1 - 26
SL1-F
SL2-S
1 - 26
SL2-F
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If the specified value is exceeded, the system will output these results with a PRO
flag attached.
A Prozone check is not performed for control samples or for samples with values
below the specified Sensitivity Limit.
S = ( ABS SL 1 F ABS SL 1 S ) ( t SL 1 F t SL 1 S )
ACTUAL MEASUREMENT VALUE
The absorbance of measurement points for the Prozone check range SL1 and SL2 is
represented by X.
The value X is the measurement value for SL1 and SL2 ( ABSSL1 and ABSSL2 ) for
the prozone limit check.
1
X = --- ( X n + X n
)
2 ----- + 1
2
2
If Upper is selected
Error if P > Prozone value (Prozone value is defined on the display menu)
If Lower is selected
Error if P < Prozone value
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When "S < Sens value", Prozone Limit Check is not performed.
(Sens value is defined on the display menu)
CALIBRATION
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The threshold value can be set on the Parameters, Normal2 menu screen within the
range 1 to 99999. An invalid result (*1) will not be included in the calculation. In the
case of triplicate measurements, a duplicate error (DUP) will be generated on every
invalid measurement. *1 Results with no error flag or an STB flag are valid. Results
with flags other than STB will be invalid.
When all three measurement values are valid (*), the median value of three values
will be used.
When two measurement values are valid (*), the average of two values will be
used.
When only one measurement value is valid, or one reagent blank value is used for
one point offset, that one value will be used.
When there is no valid measurement value, a SEN limit error will be generated.
The threshold value can be set on the Parameters Normal2 screen within the range 1
to 99999. * Results with no error flag or STB flag are valid. Results with flags other
than STB will be invalid.
Under the following conditions a duplicate limit error flag will not be generated.
a. If the duplicate limit error check is disabled.
b. When S1 is the reagent blank and measured only once.
c. When a higher priority error than duplicate limit error occurs.
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CALIBRATION TYPE
FACTOR
ABS
10000
ABS
sample
ABS s1
S1
concentration sample
concentration
concentrationsample =
K
(ABS sample ABSs1 )
10000
ABSS1 is the actual measured value of standard S1, and S1 is the known
concentration.
The concentration of the sample after calibration is defined as:
1
concentration sample = --- ABS
b
sample
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LINEAR
ABS
Sn
S2
ABS sample
S1
concentration
concentration sample
ABS = a + b concentration
where the intercept a and slope b are calculated according to the least squares
method with:
yi b xi
i=1
i=1
a = --------------------------------------n
y i
xi
n
xi yi
i=1
i=1
i = 1 b = ---------------------------------------------------------------------n
n
2
2
n
xi
x i
i=1
i=1
xi and yi are pairs of corresponding values, i.e. ABS and known concentration of
calibrators i.
n is the number of calibrators, i.e. the values from 3 to 7.
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1
concentration sample = --- ( ABS sample a )
b
A correction of intercept a for a single calibrator Sx, using a 1point recalibration with
slope b remaining constant can be performed. Intercept anew will be defined after
correction as follows:
ABS
AS5
A S4
Asample
AS3 AS2
AS1
CS1
concentration
CS2
CS4
sample
C
S3
C
CS5
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The formula for the calibration curve on each small section is defined as:
POINT TO POINT
In a Point to Point calibration each calibrator value, or point, is connected to the next
one by a straight line. For example, if there are 5 standards as shown below, the
calibration curve is composed of four straight lines (k1 to k4) between the 5 points.
= Calibrator Point
ABS
AS5
A S4
Asample
AS3 AS2
AS1
CS1
concentration
CS4
CS2
sample
C
S3
C
CS5
The formula for the point to point calibration curve may be obtained from the following
equation:
ABS = a + b concentration
a is derived as follows:
ABS Sk + 1 ABS Sk
a = ABS Sk ------------------------------------------------------------------------------------------------- concentration Sk ]
concentration Sk + 1 concentration Sk
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b is derived as follows:
ABS Sk + 1 ABS Sk
b = ------------------------------------------------------------------------------------------------concentration Sk + 1 concentration Sk
Therefore, the formula for calculating the concentration of the samples after
calibration is defined as:
1
concentration sample = --- ( ABS sample a )
b
LOG-LOGIT
= Calibrator Point
ABS
AS5 1
A S4
Asample
AS3 AS2
AS1
CS1
concentration
CS2
CS4
sample
CS3 C
CS5
In the case of a log-logit calibration type, in which there are 5 calibrators, the formula
for the calibration curve is given as follows:
ABS = k /( r + exp(ax 3 bx 2 cx d ) + 1)
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EXPONENTIAL
= Calibrator Point
ABS
AS5
AS4
A sample
AS3
A S2
AS1
CS1
concentration
CS4
CS2
sample
CS3 C
CS5
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APPENDIX C.
SOFTWARE UPGRADE PROCEDURE
The software upgrading procedure for the F560 Clinical Chemistry Analyser PC
(running Windows XP operating system) is detailed as follows:
Materials required
ITEM
New Software
CD
DESCRIPTIONS
Software No. 25503281XX where "XX" denotes
2-digit version number.
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4. With the "Backup Operation" screen displayed, click on the Save box beside
Save Data in the "Data backup (HD)"section of the backup operation screen and
the following message will appear:
"Warning! Any existing data will be over written. OK?
5. Click on the OK button and the message "Backup in process" will appear.
6. When backup complete proceed to point C.
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Main:
UC:
PRT:
LIS:
25503281XX
25503291XX
25503301XX
25503311XX
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APPENDIX D GLOSSARY
Appendix D: GLOSSARY
Job Menu
Tab Menu
Global Menu
FD
SPT
RPT
ISE
IRU
ASP
RCU
WPP
WU
Wash Unit
SWU
MIX
DTR
Detector Unit
RPP
SPP
PID
SID
Pos
STAT
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APPENDIX D GLOSSARY
RCU Scan
BCR
Profile
Multi-standard
Calculated Test
Normal Range
Result Flag
Error Flag
Alarm Code
Prime
Pumps are activated to fill the fluid system and remove air which
would otherwise affect analyser performance.
Initialisation
C1
Cal A
Cal B
Jig
Mosaic Plates
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