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(Biochem A) Carbohydrate Metabolism Table-Santos PDF
(Biochem A) Carbohydrate Metabolism Table-Santos PDF
Major pathway for glucose metabolism in all cells, nearly universal o Malate-Aspartate Shuttle
In cytosol, non-compartmentalized, primitive CYTOSOL MITOCHONDRIA
Sets the stage for complete oxidation of glucose into CO2 and H2O (via TCA: pyruvic acid to acetyl CoA) OAA ASP ASP OAA
Integrated into many other metabolic processes, with intermediates common to other pathways ↓ NADH NAD ↑ NAD NADH ETC
3 Types of Chemical Transformations Mal Mal
o Degradation of carbon skeleton of glucose to yield pyruvate o α-glycerophosphate Shuttle
o Phosphorylation of ADP to ATP by high energy PO4 compounds CYTOSOL MITOCHONDRIA
o Transfer of H+ atoms or electrons to NAD NADH+H DHAP DHAP
Glycolytic intermediates are phosphorylated ↓ NADH NAD ↑ FAD FADH ETC
o PO4 negative charge at ph 7 traps intermediate in the cell α-GP α-GP
o PO4 groups essential for enzymatic conservation of energy Energetics
o PO4 binds to active site of enzymes providing binding energy to lower activation energy Aerobic: G + 2 Pi + 2 ADP 2 lactate + 2 ATP + 2 H2O;
Property Hexokinase Glucokinase o net of 2 ATP / G; @ oxygen debt or lacking mitochondria, no net NADH+H consumption
Tissue Distribution Most tissues Liver, pancreas Anaerobic: G+ 2Pi + 2 NAD + 2 ADP 2 pyruvate + 2 ATP + NADH + 2H+ + H2O;
Glucose Km Low (0.1mM) High (10mM) o net of 2 ATP / G; 2 NADH+H / G, NADH into ETC = 2 or3 ATP
Vmax Low High Reaction Moles ATP produced or consumed / mole G
Substrate specificity D-glucose, hexoses D-glucose only G G6P -1
Inhibition by G6P yes no F6P F1,6BP -1
Insulin induction no yes GA3P 1,3BPG +4/+6
Shuttle System: NADH+H not used in pyr reduction to lac transported across mitochondrial membrane 1,3BPG 3-PG +2
Reduction of organic molecule by NADH+H go to mito reoxidation with NAD in mito back to cytosol PEP Pyr +2
Net +2 (+6/+8 if aerobic)
Step Substrate Product Enzyme Action Stimulators / Activators Inhibitors / Deactivators Notes
Glucose Hexokinase, Effectively traps G Irreversible, 1st regulatory step, requires ATP with
Phosphorylation Glucose-6-phosphate (G6P) 2-deoxyglucose
(G) glucokinase inside the cell Mg2+
PREPARTORY STAGE
ensures complete oxidation of glucose to CO2 and H2O Anaplerotic Reactions: refill / replenish depleted intermediates in TCA which have been used for biosynthetic
in mitosol, amphibolic reactions; continuous functioning
provides intermediates for biosynthesis of other compounds o Carboxylation of pyruvate
final oxidative pathway for CHO, FA, AA Principal anaplerotic reaction, in mitochondria
oxidation of molecules accounts for greatest fraction(2/3) of O2 consumption and ATP production Catalyzed by pyruvate carboxylase, ATP-dependent, allosterically activated by aCoA and LCF
principal source of reducing equivalents that enter ETC acylCoA
Energetics: acetyl CoA + 3NAD + FAD + GDP + Pi + H2O 2CO2 + 3NADH + 3H+ + FADH2 + GTP + CoASH o Reductive carboxylation of pyruvate to malate
Reactions Moles ATP / Mole Pyr Moles ATP / Mole G In cytosol
Catalyzed by NADPH-linked malate enzyme (NOT identical to mitochondrial malate DH)
Pyr aCoA 3 (NADH) 6
Provides NADPH for FA synthesis
Ict oxalosuccinate / αKG 3 (NADH) 6
o Transamination of aspartic acid to OAA
αKG sCoA 3 (NADH) 6 o Transamination of glutamic acid to αKG
sCoA suc 1 (ATP) 2 o Degradation of C skeletons of glucogenic AAs
Suc fum 2 (FADH2) 4 Met, Val, Ile sCoA
Mal OAA 3 (NADH) 6 Tyr, Phe Fum
Total 15 30 (+6/+8 from aerobic glycolysis)
Step Substrate Product Enzyme Action Stimulators / Activators Inhibitors / Deactivators Notes
Pyruvate dehydrogenase (PDH) enzyme Allosterically: AMP,
Oxidation Allosterically: ATP, acetyl
CoASH, NAD, Ca2+,
Preliminary Oxidation
pyruvate Acetyl CoA complex (E1-3); active when Links EMP to TCA Irreversible, in mitosol
(3 Steps) CoA, FA, NADH, high energy
dephosphorylated (kinase / phosphatase) low energy
Decarboxylation pyruvate Hydroxyethyl derivative E1: Pyruvate decarboxylase + TPP
Hydroxyethyl derivative /
Oxidation / Disulfide lipoic acid / E2: Dhidrolipoyl transacetylase + lipoic
Acetyl group as thioester
Transfer acetyl CoA acid
in lipoic acid
Oxidation / Sulfhydryl lipoic acid / Regenerated lipoic E3: Dihydrolipoyl DH + FAD, NAD,
Reoxidation FADH2 acid / FAD CoASH
Oxaloacetate (OAA), ATP, NADH, succinyl CoA, Rate-limiting / regulatory
Condensation Citrate (Cit) Citrate synthase Aldol condensation OAA, aCoA
acetyl CoA (aCoA) citrate, LCF acylCoA step
Isomerization Cit Isocitrate (ict) aconitase Dehydration, hydration Ca2+, ADP Fluorocitrate, ATP
Isocitrate, AMP, ADP,
Oxidation and Releases 1st of 3 NADH ATP, NADH, high energy Irreversible, rate-limiting
Ict α-ketoglutarate (αKG) Ict DH Ca2+, low energy
carboxylation and 1st CO2 charge step
charge
TCA Cycle
Hydrolysis
6PGL lactone group 6-phosphogluconic acid (6PGA) gluconolactonase
Oxidative decarboxylation
6PGA Ribulose-5-phosphate (Rbls5P) 6-Phosphogluconate DH (NADP-linked) Produces 2nd NADPH
Conversion
Rbls5P Ribose-5-phosphate (Rbs5P) Phosphopentose isomerase (ketoisomerase)
Non-Oxidative
(Isomerization)
Conversion Rbs5P Xylulose-5-phosphate (X5P) Phosphopentose epimerase
GA3P + sedoheptulose-7-phosphate
Transketolation 1 X5P + Rbs5P Transketolase Donor: Ketose, Receiver: Aldose
(S7P)
Transaldolation S7P + GA3P Erythrose-4-P (E4P) + F6P Transaldolase Donor: Aldose, Receiver: Ketose
Transketolation 2 X5P + E4P GA3P + F6P Transketolase
Synthesis of glucose from non-carb sources (lac, pyr, glycerol, glucogenic AA, odd-chain FA)
Both in cytosol and mitochondria in liver (90%) and renal cortex (10%)
Not a reverse of glycolysis/EMP; but 8 out of 11 glycolysis steps are reversible and are shared
o Direct reversal of EMP = ΔG°’ = +20 Kcal/mol = very unfavorable thermodynamically
o GNG = ΔG°’ = -9 Kcal/mol = feasible
4 unique rxns (pyruvate carboxylase (pyr CX), PEP CX, F1,6BP 1-phosphatase, and G6Pase) w/c circumvent the 3 irreversible glycolytic rxns (Hexokinase, PFK1, pyruvate kinase)
All inhibitors of EMP are activators of GNG and vice versa
Fxn: maintains blood sugar concentration, uses lactate and glycerol (end products of glycolysis and glycerol), excretes excess protons by kidneys during metabolic acidosis, recycles C skeletons of deaminated AA
Energetics: couples cleavage of cleavage of 6 high-energy phosphate bonds per glucose molecule
Reaction Change in ATP / Glucose
Pyr OAA -2 ATP
OAA PEP -2 GTP (or ATP)
3PGA 1,3BPG -2 ATP
Total -6 ATP
o Summary: 2 pyr + 4ATP + 2GTP + NADH +2H+ glucose + 2 NAD+ + 4ADP + 2GDP + 6Pi
Regulation
o Enzyme compartmentation – pyr kinase (cytosol), pyr CX (mito)
o Substrate availability – glucogenic AA and lactate
o Allosteric regulation and feedback control
↑ Pyr CX by aCoA, ATP
Pyr kinase if inhibited directs to GNG; ↑ by F1,6BP; ↓ ATP, alanine, free FA, aCoA (high energy)
↑ F1,6BP1Pase by citrate, ATP; ↓ by AMP, ADP, F2,6BP
↓ G6Pase by Pi and glucose (product inhibition)
o Hormonal control
Induction of enzyme synthesis – key GNG enzymes ↑ by glucocorticoids, ↓ by insulin (also induces EMP enzymes)
Covalent modification
Glucagon ↓ pyr kinase by phosphorylation, ↑ F2,6BPase by phosphorylation
Insulin ↓ GNG by ↓cAMP levels = ↓ phosphorylation of F2,6BPase
synthesized and stored in cystolic granules in liver and muscle, higher conc in liver, greater % in muscle
polymeric nature – easier sequestration of energy stores (unlike glucose)
liver glycogen maintains blood glucose via breakdown; 10% of weight is glycogen (higher in well-fed state), lasts 12-24 hours
muscle glycogen for fuel reserve; 2% weight as glycogen
GLYCOGENESIS (Synthesis)
Step Substrate Product Enzyme Notes / Action
Isomerization G6P Glucose-1-phosphate (G1P) Phosphoglucomutase
Formation G1P + UTP UDP-glucose (UDPG) + PPi UDPG pyrophosphorylase
Hydrolysis UPDG + PPi Pyrophosphatase
Formation Old glycogen fragment or glycogenin Glycogen primer Glycogen initiator synthase free G cannot accept a molecule of G from UDPG to initiate chain synthesis
Elongation via G from UDPG + primer Elongated primer with G, UDP Glycogen synthase (GlyS) Forms α14 glycosidic bonds,
Transfer
Branching 7G chain Connects to C6 Branching enzyme (α-D-glucsyl-4:6 transferase / Forms α16 glycosidic bonds, irreversible, at least 11G before transfer (4G
oligo 1,41,6 glucantransferase) remains between branching), ↑ solubility, ↑ non-reducing ends = ↑ synthesis
GLYCOGENOLYSIS (Degradation)
Step Substrate Product Enzyme Notes / Action
Phosphorolysis Terminal α1,4 glycosidic bonds at G1P Glycogen phosphorylase Rate limiting step, ends if 4G remaining on chain before branch
non-reducing end
Debranching Glycogen chain Shorter branch Glucose 4:4 transferase Transfers outer 3G of 4G of a branch to non-reducing end of another chain
Glycogen chain G, glycogen chain Amylo α1,6 glucosidase Breaks α1,6 linkage, makes chain available for glycogen phosphorylase
Regulation
Enzyme Activity State (Phosphorylated/ Action/Notes
Dephosphorylated)
GlyS D Inactive P G6P dependent
GlyS I Active D G6P independent
Glycogenesis cAMP-dependent protein kinase Interconverts GlyS D/I
Phosphoprotein phospatase Dephosphorylates GlyS D
Phosphoprotein phospatase inhibitor Active/Inactive P/D
GlyP a Active P Liver: dimer with pyridoxal PO4; Muscle: allosterically activated by ATP, G6P (↑ energy)
GlyP b Inactive D By phosphatase; Muscle: allosterically activated by AMP (↓ energy)
Glycogenolysis
Phosphorylase kinase Active/Inactive P/D Activates GlyP b to a
cAMP-dependent protein kinase With cAMP activates phosphorylase, 2R/2C tetramer
Clinical Disorders
Hereditary Fructose Intolerance – genetic deficiency of aldolase B = ↑ F1P = inhibits fructokinase, hepatic glycogen phosphorylase, aldolase A
Essential Fructosuria – deficient hepatic fructokinase ↑ blood/urine fructose
Fructosemia – deficient F1,6BP1P = ↑ F1,6BP in blood and urine
GALACTOSE METABOLISM
LACTOSE METABOLISM