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Expert Review of Anti-infective Therapy

ISSN: 1478-7210 (Print) 1744-8336 (Online) Journal homepage: http://www.tandfonline.com/loi/ierz20

The epidemiology of carbapenemases in Latin


America and the Caribbean

Kevin Escandón-Vargas, Sergio Reyes, Sergio Gutiérrez & María Virginia


Villegas

To cite this article: Kevin Escandón-Vargas, Sergio Reyes, Sergio Gutiérrez & María Virginia
Villegas (2017) The epidemiology of carbapenemases in Latin America and the Caribbean, Expert
Review of Anti-infective Therapy, 15:3, 277-297, DOI: 10.1080/14787210.2017.1268918

To link to this article: https://doi.org/10.1080/14787210.2017.1268918

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EXPERT REVIEW OF ANTI-INFECTIVE THERAPY, 2017
VOL. 15, NO. 3, 277–297
http://dx.doi.org/10.1080/14787210.2017.1268918

REVIEW

The epidemiology of carbapenemases in Latin America and the Caribbean


a
Kevin Escandón-Vargas , Sergio Reyesa, Sergio Gutiérreza and María Virginia Villegasa,b
a
Bacterial Resistance and Hospital Epidemiology Unit, International Center for Medical Research and Training (CIDEIM), Cali, Colombia; bMolecular
Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogotá, Colombia

ABSTRACT ARTICLE HISTORY


Introduction: Enterobacteriaceae, Pseudomonas spp., and Acinetobacter spp. infections are major causes of Received 26 September 2016
morbidity and mortality, especially due to the emergence and spread of β-lactamases. Carbapenemases, Accepted 2 December 2016
which are β-lactamases with the capacity to hydrolyze or inactivate carbapenems, have become a serious KEYWORDS
concern as they have the largest hydrolytic spectrum and therefore limit the utility of most β-lactam Carbapenemases;
antibiotics. β-lactamases; carbapenems;
Areas covered: Here, we present an update of the current status of carbapenemases in Latin America Enterobacteriaceae;
and the Caribbean. Pseudomonas aeruginosa;
Expert commentary: The increased frequency of reports on carbapenemases in Latin America and the Acinetobacter baumannii;
Caribbean shows that they have successfully spread and have even become endemic in some countries. antimicrobial resistance;
Countries such as Brazil, Colombia, Argentina, and Mexico account for the majority of these reports. Latin America
Early suspicion and detection along with implementation of antimicrobial stewardship programs in all
healthcare settings are crucial for the control and prevention of carbapenemase-producing bacteria.

1. Introduction might be underestimated as their detection is difficult to per-


Gram-negative bacteria, namely Enterobacteriaceae and non- form in most clinical microbiology laboratories. Additionally,
fermenters such as Pseudomonas spp. and Acinetobacter spp., not all carbapenemase producers exhibit a carbapenem resis-
are pathogens responsible for numerous infections and out- tance phenotype that raises suspicion warranting molecular
breaks in clinical settings, representing a major cause of mor- confirmation [3].
bidity and mortality. Such bacteria frequently display Despite the fact that infections due to carbapenem-resis-
resistance to β-lactams and other antibiotics (e.g. quinolones tant bacteria are associated with higher mortality rates, pro-
and aminoglycosides) and therefore pose a public health longed hospital stays, and increased healthcare costs [3,4], few
threat and a therapeutic challenge. β-lactamase production studies have been performed to evaluate the clinical impact of
is regarded as the most important mechanism of resistance carbapenem resistance in Latin America. Recently, a Latin
to β-lactams in gram-negative bacteria. Carbapenemases, American study of patients with bloodstream infections due
which are β-lactamases with the capacity to hydrolyze or to Enterobacteriaceae determined that carbapenemase-produ-
inactivate carbapenems, have become a serious concern as cing Enterobacteriaceae infection (53/255 episodes, 21%) is an
they have the largest hydrolytic spectrum and therefore limit independent mortality predictor (adjusted odds ratio 4; 95%
the utility of most β-lactam antibiotics. confidence interval 1.7–9.5; p = 0.002) [5]. Higher costs were
Based on Ambler’s molecular classification, carbapene- also found associated with carbapenemase-producing
mases are divided into the class A serine-β-lactamases, class Enterobacteriaceae infections in this cohort [6]. These findings
B metallo-β-lactamases, and class D serine-β-lactamases [1]. underscore the importance of performing campaigns for pre-
Whereas the serine-β-lactamases require a serine moiety at venting the spread of carbapenemase producers in healthcare
their active site, metallo-β-lactamases require divalent metal facilities in Latin America.
cations, usually zinc, for enzyme activity. Although the first Due to the changing epidemiology of the carbapenemases
carbapenemases described were chromosomally encoded and and their associated clinical implications, we present a review
species specific, worldwide dissemination of plasmid- on their current epidemiology in Latin America and the
mediated carbapenemases has occurred, leading to interspe- Caribbean. Studies describing the presence of carbapene-
cies spread through horizontal gene transfer. mases in patient isolates were included by carefully reviewing
Carbapenemases represent a serious problem among infec- abstracts and manuscripts identified using PubMed, SciELO,
tious diseases and microbiology professionals, and Latin LILACS, and Google Scholar databases. Also, other kind of
America and the Caribbean are not immune to this problem. reports (abstracts from the Interscience Conference on
Numerous and novel carbapenemase variants of different Antimicrobial Agents and Chemotherapy [ICAAC], reports
classes are continuously being identified [2]. However, they from National Institutes of Health, etc.) were considered only

CONTACT Kevin Escandón-Vargas kevin.escandonvargas@gmail.com; María Virginia Villegas mariavirginia.villegas@gmail.com


© 2016 Informa UK Limited, trading as Taylor & Francis Group
Table 1. Carbapenemases reported in Latin America and the Caribbean.
Class/Family Enzyme variant Bacteria Country References
278

Class A
NMC-A NMC-A E. cloacae Argentina, Colombia [11,12]
KPC KPC-2 K. pneumoniae, K. oxytoca, C. freundii, Enterobacter spp., E. coli, S. Argentina, Brazil, Chile, Colombia, Cuba, Ecuador, Mexico, Puerto [17,18,21,23,25–54,56–61,66,69–71,73–
marcescens, P. mirabilis, S. enterica, Kluyvera georgiana Rico, Uruguay, Venezuela 76,81,82,84,139,190,242,243]
KPC-2 P. aeruginosa, P. putida Argentina, Brazil, Chile, Colombia, Puerto Rico, Trinidad and Tobago [18,54,85,87–93,175,176]
KPC-2 Acinetobacter spp.a Puerto Rico [94]
KPC-3 K. pneumoniae Argentina, Brazil, Colombia, Mexico, Panama [19,22,24,27,28,54,67,68,78]
KPC-3 Acinetobacter spp.a Puerto Rico [94]
KPC-4 Acinetobacter spp.a Puerto Rico [94]
KPC-5 P. aeruginosa Puerto Rico [85,86]
KPC-8 K. pneumoniae Puerto Rico [61]
KPC-10 Acinetobacter spp.a Puerto Rico [94]
KPC-24 K. pneumoniae Chile [76]
KPC (unknown Enterobacter spp., E. coli, K. pneumoniae, K. oxytoca, C. freundii, S. Brazil, Chile, Panama, Paraguay, Perub, Puerto Rico, Venezuela [55,62–65,72,75,77,79,83,187,225–227]
K. ESCANDÓN-VARGAS ET AL.

variant) marcescens, S. enterica


KPC (unknown A. baumannii Puerto Rico [62]
variant)
GES GES-2 P. aeruginosa Argentina [104]
GES-5 P. aeruginosa Brazil, Mexico [90,105–107,110]
GES-5 K. pneumoniae Brazil [108,109]
GES-16 S. marcescens Brazil [101]
GES-20 K. pneumoniae, E. coli, P. aeruginosa Mexico [103,111]
BKC BKC-1 K. pneumoniae Brazil [112,113]
Class B
IMP IMP-1 K. pneumoniae, E. cloacae, P. rettgeri Brazil [121,133,135,136]
IMP-1 P. aeruginosa, P. fluorescens, P. putida Brazil, Mexico [106,107,122–130,132,140]
IMP-1 A. baumannii Brazil, Mexico [132,134,146]
IMP-1 A. junii Argentina [149]
IMP-1 Acinetobacter spp.a Argentina, Brazil [130–133,148]
IMP-6 A. baumannii Brazil [120]
IMP-8 E. cloacae, K. oxytoca, C. freundii Argentina [153,154]
IMP-10 S. marcescens Brazil [139]
IMP-10 A. baumannii Brazil [138]
IMP-13 P. aeruginosa Argentina [150–152]
IMP-15 P. aeruginosa Mexico [111,143–145]
IMP-16 P. aeruginosa Argentina, Brazil [123,128–130,137,140,152]
IMP-18 K. oxytoca Mexico [147]
IMP-18 P. aeruginosa Brazil, Costa Rica, Mexico, Puerto Rico [85,133,140–142,155–157]
IMP-36 P. aeruginosa Mexico [111]
IMP-49 P. aeruginosa Brazil [140]
IMP (unknown P. aeruginosa Peru, Venezuela [158,159]
variant)
IMP (unknown P. rettgeri Colombia [160]
variant)
VIM VIM-1 A. baumannii Mexico [193]
VIM-2 P. aeruginosa, P. fluorescens, P. putida, P. fulva Argentina, Brazil, Chile, Colombia, Costa Rica, Mexico, Uruguay, [26,54,90,110,111,122,130,133,140,144,155,165–
Venezuela 172,174–177,180–184]
VIM-2 K. pneumoniae, Enterobacter spp., K. oxytoca, P. rettgeri Argentina, Mexico, Venezuela [153,185–188]
VIM-2 Brevundimonas diminuta Argentina [192]
VIM-4 A. baumannii Mexico [146]
VIM-8 P. aeruginosa Colombia [173]
VIM-11 P. aeruginosa Argentina, Mexico [110,178–180]
VIM-16 S. marcescens Argentina [191]
VIM-23 E. cloacae, K. oxytoca, C. freundii, E. aerogenes Mexico [140,147]
VIM-24 K. pneumoniae Colombia [189,190]
VIM (unknown P. aeruginosa Perub -
variant)
(Continued )
Table1. (Continued).
Class/Family Enzyme variant Bacteria Country References
NDM NDM-1 K. pneumoniae, P. rettgeri, E. coli, M. morganii, S. fonticola, E. Argentina, Brazil, Chile, Colombia, Costa Rica, Guadeloupe, [75,140,223–230,233–243,246,248,250–252]
cloacae, E. hormaechei, C. freundii, P. mirabilis Guatemala, Jamaica, Mexico, Nicaragua, Perub, Uruguay,
Venezuela
NDM-1 P. aeruginosa Colombia [226,227]
NDM-1 A. baumannii Brazil, Colombia, Honduras, Nicaragua, Paraguay [225–229,232,244,248]
NDM-1 A. faecalis Colombia [226]
NDM-1 A. haemolyticus Colombia [226]
NDM-1 A. junii Argentina [247]
NDM-1 A. nosocomialis Colombia [228]
NDM-1 A. pittii Brazil, Paraguay [231,245]
NDM-1 A. soli Cuba [249]
SPM SPM-1 P. aeruginosa Brazil [90,106,107,122–
127,129,130,171,172,196,197,202–220]
Class Dc
OXA-23 subgroup OXA-23 A. baumannii Argentina, Bolivia, Brazil, Chile, Colombia, Ecuador, Guadeloupe, [134,226,251,261–276,278–290,292,295–297]
Mexico, Paraguay, Uruguay, Venezuela
OXA-23 A. nosocomialis Brazil, Colombia [272,277,291]
OXA-23 A. pittii Brazil [277]
OXA-23 Acinetobacter spp.a Brazil, Cuba, Jamaica, Venezuela [148,249,276,293]
OXA-239 A. baumannii Mexico [294,295]
OXA-469 A. baumannii Mexico [295]
OXA-40/24 OXA-40 A. baumannii Mexico [146,147,295]
subgroup
OXA-40-like A. baumannii Chile, Cuba, Jamaica [249,292,293]
OXA-40-like Acinetobacter spp.a Argentina, Brazil, Mexico [147,300]
OXA-72 A. baumannii Brazil, Colombia, Ecuador, Mexico [193,265,275,282,287,295,296,301–303,305]
OXA-72 A. pittii Colombia [304]
OXA-58 subgroup OXA-58 A. baumannii Argentina, Bolivia, Brazil, Chile, Mexico, Venezuela [265,268,279–
281,283,292,294,295,301,308,309,316]
OXA-58 A. junii Argentina [149]
OXA-58 A. seifertii Brazil [315]
OXA-58 A. pittii Colombia [291]
OXA-58 Acinetobacter spp.a Argentina, Chile, Cuba, Jamaica, Puerto Rico [94,147,249,293,300,307]
OXA-48 subgroup OXA-48 K. pneumoniae Argentina [318]
OXA-48 K. oxytoca Colombia [319]
OXA-163 K. pneumoniae, E. cloacae Argentina [54,147,318,320,321]
OXA-247 K. pneumoniae Argentina [321]
OXA-370 Enterobacter spp., K. pneumoniae Brazil [322,323]
OXA-143 OXA-143 A. baumannii Brazil [134,265,266,273,276,324]
subgroup
OXA-231 A. baumannii Brazil [325,326]
OXA-253 A. baumannii Brazil, Honduras [326,327]
OXA-235 OXA-235 A. baumannii Mexico [310]
subgroup
a
Acinetobacter species not determined.
b
Personal communication.
c
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY

OXA-51 enzymes are intrinsic to A. baumannii. OXA-51 variants reported in Latin America and the Caribbean are OXA-51, -65, -66, -69, -77, -78, -83, -89, -94, -95, -99, -100, -132. blaOXA-51 -like has been detected in A.
nosocomialis and A. pittii in southern Brazil.
279
280 K. ESCANDÓN-VARGAS ET AL.

in the absence of formal journal reports. Latin America and the America, NMC-A was the first class A carbapenemase found
Caribbean is the group of countries and dependencies com- and was described in an E. cloacae isolate collected during
prising Argentina, Bolivia, Brazil, Chile, Colombia, Costa Rica, 2000 in Buenos Aires, Argentina [11]. Later in 2009, NMC-A
Ecuador, El Salvador, French Guiana, Guatemala, Honduras, was found in an E. cloacae isolate from Barranquilla,
Mexico, Nicaragua, Panama, Paraguay, Perú, Uruguay, Colombia [12].
Venezuela, the Greater Antilles (Cuba, Dominican Republic,
Haiti, Jamaica, and Puerto Rico), and the Lesser Antilles
2.2. Klebsiella pneumoniae carbapenemase
(Guadeloupe, Trinidad and Tobago, others).
KPC enzymes are the most prevalent class A carbapenemases
worldwide. They efficiently hydrolyze penicillins, cephalospor-
2. Class A carbapenemases ins, monobactams, and carbapenems, and are partially inhib-
Class A carbapenemases have predominantly been reported in ited by β-lactamase inhibitors such as clavulanic acid and
several members of the Enterobacteriaceae family, which are tazobactam. In the last two decades, these carbapenemases
causative agents of severe infections and outbreaks. Their hydro- have become an emerging threat given their resistance profile
lytic mechanism confers resistance to many β-lactam antibiotics and the wide capacity of dissemination across multiple con-
including carbapenems. They can be located on the bacterial tinents. They are mostly plasmid encoded but chromosomal
chromosome or in mobile genetic elements allowing their trans- locations have also been reported. Mobile genetic elements,
fer and spread between gram-negative bacteria [2]. Nine main such as the plasmid-borne transposon Tn4401, have played a
types of class A carbapenemases are currently known: Serratia role in the acquisition and spread of successful blaKPC-carrying
marcescens enzyme (SME), imipenem-hydrolyzing β-lactamase clones including the sequence type (ST) 258 clone [13].
(IMI), non-metallo-carbapenemase of class A (NMC-A), Klebsiella Up to date, 23 valid KPC variants (KPC-2 to −24) (http://
pneumoniae carbapenemase (KPC), Guiana extended-spectrum www.lahey.org/studies) have been identified differing by one
β-lactamase (GES), Serratia fonticola carbapenemase (SFC), to three amino acid substitutions [14]. KPC-1 (sequence later
Brazilian Klebsiella carbapenemase (BKC), Bicêtre carbapenemase recognized to be identical to KPC-2) was first identified in 1996
(BIC), and French imipenemase (FRI). Within this class of enzymes, in a carbapenem-resistant Klebsiella pneumoniae strain col-
only NMC-A, KPC, GES, and BKC families have been reported in lected from North Carolina, USA during the ICARE (Intensive
Latin America and the Caribbean (Figure 1). Care Antimicrobial Resistance Epidemiology) surveillance
study [15]. Subsequently, as a result of clonal expansion and
horizontal gene transfer, blaKPC genes have disseminated in
2.1. Non-metallo-carbapenemase of class A multiple regions of the world and have been recognized
NMC-A β-lactamase confers resistant to penicillins, narrow- throughout diverse gram-negative species, but remain most
spectrum cephalosporins, cefoxitin, and aztreonam. NMC-A prominent in K. pneumoniae [16]. Currently, KPCs have been
was first identified as a novel chromosomally encoded carba- identified mainly in Enterobacteriaceae with KPC-2 and KPC-3
penemase in 1990 from a clinical isolate of Enterobacter cloa- being the most widespread KPC variants worldwide.
cae in Paris, France [7,8]. This isolate was imipenem resistant The first Latin American report of a KPC took place in
but cefotaxime susceptible. This rare enzyme was later found Medellín, Colombia in 2005. The presence of KPC-2 was
in Seattle and New York City in the USA [9,10]. In Latin described in two clinical isolates of K. pneumoniae collected
from unrelated healthcare facilities [17]. In 2006, an imipenem-
resistant Citrobacter freundii isolate from one of these medical
centers was found to harbor blaKPC-2 [18] and later in 2008, a
KPC-3-producing K. pneumoniae strain was identified in an
Israeli patient who had traveled to Medellin, Colombia for a
liver transplantation [19]. The clone was indistinguishable from
a KPC-3-producing clone previously described in multiple out-
breaks in Israel [20]. Investigation of this Colombian isolate led
to the demonstration of the first carbapenemase outbreak in
Latin America consisting of at least 36 KPC-3-producing K.
pneumoniae isolates collected throughout 2008 [19]. The
active dissemination of both KPC-2 and KPC-3 has been
demonstrated in several Enterobacteriaceae members from
Colombia [21–28], reaching rates of KPC production of 13–
86% among carbapenem-non-susceptible isolates. Colombian
KPC-producing K. pneumoniae isolates have been found
mostly associated with ST258 and ST512 [27,28].
KPC enzymes have also been present in Brazil since at
least 2005 but they were not detected at that time. The first
KPC (KPC-2) in this country was retrospectively identified in
Figure 1. Class A carbapenemases distribution in Latin America and the K. pneumoniae isolates collected from hospitals in São Paulo
Caribbean. and Florianópolis [29,30], and since then, wide dispersion of
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY 281

the blaKPC gene has occurred throughout the country and Although dissemination of KPC has already been reported in
many other cases have been reported including KPC-2 virtually all Enterobacteriaceae species, KPC-producing
detected in K. pneumoniae, Enterobacter spp., Escherichia Salmonella enterica isolates remain infrequent. Since the first
coli, Serratia marcescens, and K. oxytoca clinical isolates KPC-producing S. enterica serovar Cubana described in 1998 in
[31–45]. Recently, the first Latin American Enterobacter ger- Maryland, USA [80], KPC-2 has been described in Latin America
goviae harboring blaKPC-2 has been reported in Brazil [46]. in a S. enterica serovar Typhimurium isolate in Colombia [81], in
Molecular epidemiology studies have revealed the predomi- a S. enterica serovar Schwarzengrund isolate in Argentina [82],
nant dissemination of the clonal complex (CC) 11/258 (ST11, and in a S. enterica serovar Javiana in Paraguay [83]. Likewise,
ST258, ST437, and ST340) among KPC-2-producing K. pneu- reports of multidrug-resistant Kluyvera spp. isolates also remain
moniae isolates collected from multiple Brazilian hospitals extremely rare. KPC-2-producing K. georgiana was reported in a
from 2006 to 2010 [47–52]. Likewise, great clonal diversity tracheal aspirate from a Brazilian patient in 2011 [84].
has been reported for KPC-2-producing non-K. pneumoniae On the other hand, the identification of KPC (KPC-2) in P.
Enterobacteriaceae in Brazil [53]. KPC-3 variant has occasion- aeruginosa was reported for the first time globally in Colombia
ally been reported in Brazil [54]. Although K. pneumoniae is in 2007 [18]. Soon afterwards, KPC-2 and KPC-5 were reported
the predominant KPC producer in most of the country, in P. aeruginosa isolates from several hospitals in Puerto Rico
Enterobacter spp. have been found as the main KPC produ- [85,86]. Emergence of KPC-2 in P. aeruginosa was reported in
cers in southern Brazil [33,55]. Recently, the first Latin Trinidad and Tobago in 2009 in a patient with no history of
American report of KPC-2-producing Proteus mirabilis has travel abroad [87]. In Brazil, KPC-2 was detected in a P. putida
been made in Recife, Brazil [56]. bloodstream isolate from a child in 2008 [88], and subse-
In Argentina, the first detection of KPC (KPC-2) occurred in quently in P. aeruginosa clinical isolates from two unrelated
2006 in a patient coinfected with K. pneumoniae and C. freundii in hospitals [89,90]. In Argentina, KPC-2-positive P. aeruginosa
Buenos Aires [57]. Subsequently, 77 KPC-2 producers, mostly K. isolates have been found since 2006 and have been associated
pneumoniae but including strains of E. cloacae, C. freundii, E. coli to the import and local clonal expansion of the international
and S. marcescens, were collected from 30 hospitals across the multidrug-resistant clone ST654 (CC244) [91–93]. Interestingly,
country during 2008–2010 [58]. Several studies demonstrated Chile has also identified KPC-2-producing P. aeruginosa iso-
the major occurrence of clonal dissemination of K. pneumoniae lates during 2012–2014 [54].
ST258 harboring the blaKPC-2 gene [50,58–60], but KPC-3-produ- With regard to A. baumannii-calcoaceticus complex isolates,
cing K. pneumoniae isolates have also been reported [54]. In KPC-2, -3, -4, and -10 were for the first time described in
Puerto Rico, the first hospital outbreak caused by KPC-positive hospital isolates collected from Puerto Rico in 2009 [62,94].
K. pneumoniae occurred in 2008, in which KPC-2 and -8 variants To the best of our knowledge, no other countries in the world
were identified [61]. KPC-producing E. coli was later found in this have since reported KPC enzymes in Acinetobacter spp. iso-
country in 2009 [62]. In Venezuela, KPC-producing K. pneumoniae lates, but the existence of KPC-producing Enterobacteriaceae
and E. cloacae were first described between 2009 and 2010 [63]; and P. aeruginosa highlights the possibility of further dissemi-
currently KPC-2 is the KPC variant which has been predominantly nation of KPC in Acinetobacter spp. elsewhere in the world.
identified in K. pneumoniae in this country [54]. Other KPC-pro-
ducing Enterobacteriaceae, including Enterobacter spp., E. coli, K.
2.3. Guiana extended-spectrum β-lactamase
oxytoca, and C. freundii, have also been identified in Venezuela
[64–66]. In Mexico, the first outbreaks of KPC-3 and KPC-2-produ- The GES family has 31 enzyme variants (ftp://ftp.ncbi.nlm.nih.
cing K. pneumoniae were identified in 2010 and between 2012 gov/pathogen/betalactamases/Allele.tab) encoded by genes
and 2013, respectively [67–69]; all isolates of these Mexican out- that mostly occur in the form of cassettes carried by class 1
breaks belonged to the pandemic clone ST258, which is part of integrons in both chromosomes (mostly in P. aeruginosa) and
the CC292. In Ecuador, the first case report of a KPC-2-producing plasmids (Enterobacteriaceae, P. aeruginosa, and A. baumannii).
K. pneumoniae was identified in 2010 [70], and since that time, GES-type β-lactamases have been found in several gram-nega-
dissemination of different KPC-2 clones has been reported [71]. tive bacterial species since the first description of the ceftazi-
Likewise, in 2011, KPC was first detected in Chile in a K. pneumo- dime-hydrolyzing enzyme GES-1 in 1998 in a K. pneumoniae
niae isolated from a patient who had traveled from Italy [72], in isolate from a French Guiana patient [95]. All GES variants are
Uruguay in two patients infected with KPC-2-producing K. pneu- capable to hydrolyze broad-spectrum cephalosporins, but only
moniae (ST258) [73], and in Cuba in three K. pneumoniae clinical some of them (GES-2, -4, -5, -6, -11, -14, -15, -16, -18, -20, -21,
isolates harboring blaKPC-2 (ST1271, CC29) [74]. Subsequently, and -24) have been reported to possess activity toward carba-
several other cases of KPC-2-producing Enterobacteriaceae penems as a result of specific amino acid substitutions inside
[75,76] and a novel KPC-24-producing K. pneumoniae [76] have the active site [96–103]. In Latin America, few GES-type carba-
been reported in Chile; most of these strains belonged to CC258 penemases have been reported. GES-2 was identified in P.
[76]. KPC-producing K. pneumoniae isolates have been detected aeruginosa in Argentina in 2004 [104]. In Brazil, GES-5 has
in Panama since at least 2011 [77]; KPC-3 seems to be the been reported in clinical isolates of P. aeruginosa [90,105–
predominant variant identified thus far [78]. Thereafter, the first 107] and K. pneumoniae [108,109]. In Mexico, GES-5 was
KPC-producing K. pneumoniae clinical isolate was identified in reported coexpressed with the metallo-β-lactamases VIM-2
Peru in 2013 [79], and other cases of KPC-producing K. pneumo- and VIM-11 in several P. aeruginosa isolates recovered during
niae and E. cloacae have since identified (Edgar Gonzales- 2004 [110]. Of note, the novel GES-16 variant was for first time
Escalante, personal communication). identified in two clinical isolates of S. marcescens from Brazil in
282 K. ESCANDÓN-VARGAS ET AL.

2011 [101]. Finally, the GES-20 carbapenemase has been


reported in clinical isolates of K. pneumoniae, E. coli, and P.
aeruginosa collected during 2004–2011 in Mexico [103,111].

2.4. Brazilian Klebsiella carbapenemase


Recently, a novel plasmidic class A serine carbapenemase,
named BKC-1, was reported in three clinical isolates of K.
pneumoniae (ST1781) collected in 2008 from different patients
hospitalized in São Paulo, Brazil [112]. BKC-1 hydrolyzes peni-
cillins, cephalosporins, monobactams, and carbapenems but
spares cephamycins. Further screening for BKC among
Brazilian clinical isolates of Klebsiella spp. allowed identifying
two other BKC-1-producing K. pneumoniae strains (ST 1781
and its single-locus variant ST442) [113]. To date, all BKC-1
producers described belong to CC442 and harbor BKC-1 gene
on a small nonconjugative plasmid.
Figure 2. Class B carbapenemases distribution in Latin America and the
Caribbean.

3. Class B carbapenemases
Class B carbapenemases are also known as metallo-β-lactamases 1 (Bradyrhizobium japonicum), SMB-1 (S. marcescens), and Tripoli
due to the presence of a metal ion, usually zinc (Zn2+), in their metallo-β-lactamase (TMB).
active site. Consequently, they are inhibited by metal-chelating Among the metallo-β-lactamases, VIMs and NDMs are the
agents such as ethylenediaminetetraacetic acid (EDTA). Metallo- most prevalent in the world [2]. The acquired metallo-β-lacta-
β-lactamases are resistant to all commercially available β-lacta- mase families reported in Latin America and the Caribbean to
mase inhibitors and preserve susceptibility to monobactams (e.g. date are IMP, VIM, NDM, and SPM (Figure 2).
aztreonam) in the absence of simultaneous expression of other
resistance mechanisms [2]. Metallo-β-lactamases are classified
3.1. Imipenemase
into three subclasses (B1, B2, and B3) according to sequence
alignments and zinc coordination [114]. Subclass B1 needs two IMP-type metallo-β-lactamases were the first acquired carba-
zinc ions coordinated for enzyme activity and has a broad spec- penemases to be identified in the world. The first report of this
trum of action including carbapenems. This subclass includes the enzyme (IMP-1) was in 1988 from an imipenem-resistant P.
largest number of clinically relevant members as imipenemase aeruginosa isolate in Japan [115], which was followed by IMP-
(IMP), Verona integron-encoded metallo-β-lactamase (VIM), New 1-producing S. marcescens isolates collected in the same coun-
Delhi metallo-β-lactamase (NDM), São Paulo metallo-β-lacta- try [116–118]. So far, 58 IMP variants have been assigned
mase (SPM), German imipenemase (GIM), Seoul imipenemase (ftp://ftp.ncbi.nlm.nih.gov/pathogen/betalactamases/Allele.
(SIM), Kyorin health science metallo-β-lactamase (KHM), tab), and IMP-type carbapenemase producers have spread
Australian imipenemase (AIM), Dutch imipenemase (DIM), and throughout Asia and the world [2]. IMP hydrolyses a broad
Florence imipenemase (FIM), and the chromosomally encoded range of β-lactams, including penicillins, cephalosporins, and
BcII (Bacillus cereus), CcrA (Bacteroides fragilis), Bla2 (Bacillus carbapenems, but spares aztreonam. The blaIMP gene is com-
anthracis), IND (Chryseobacterium indologenes), BlaB monly found as a gene cassette within class 1 integrons which
(Elizabethkingia meningoseptica), CGB-1 (Chryseobacterium can mobilize by transposition or plasmid conjugation [119].
gleum), TUS-1 (Myroides odoratus), MUS-1 (Myroides odoratimi- IMP was not identified in Latin America until 2003, when
mus), JOHN-1 (Flavobacterium johnsoniae), EBR-1 (Empedobacter IMP-6 and IMP-1 were isolated in A. baumannii [120] and K.
brevis), SFB-1 (Shewanella frigidimarina) and SLB (Shewanella pneumoniae [121] isolates, respectively, in Brazil. Thereafter,
livingstonensis). Subclass B2 binds one zinc ion in their active IMP-1 was reported in several other clinical isolates of P.
site and are inhibited when a second zinc ligand is bound. These aeruginosa [106,107,122–129], Acinetobacter spp. [130–134],
metallo-β-lactamases are chromosomally encoded and have a P. fluorescens [130], K. pneumoniae [135,136], E. cloacae [133],
preferential hydrolytic profile for carbapenems. This subclass and P. putida [132] throughout the country. The first Latin
includes CphA (Aeromonas hydrophila), ImiS and AsbM1 American report of a metallo-β-lactamase in a Providencia
(Aeromonas veronii), SFH-1 (S. fonticola). Enzymes of subclass B3 rettgeri isolate was an IMP-1 identified in 2005 in Brazil [135].
are binuclear zinc-dependent, as subclass B1, but possesses pre- There are also Brazilian reports of IMP-16 in P. aeruginosa
ferential hydrolysis of cephalosporins. The subclass B3 includes [123,128–130,137], IMP-10 in A. baumannii [138], IMP-18 in P.
chromosomally-encoded enzymes which are L1 aeruginosa [133], IMP-10 in S. marcescens coproducing KPC-2
(Stenotrophomonas maltophilia), Mbl1b (Caulobacter crescentus), [139], and IMP-49 in P. aeruginosa [140].
CAU-1 (Caulobacter vibrioides), THIN-B (Janthinobacterium livi- In Mexico, IMP-18 [140–142], IMP-15 [111,143–145], IMP-36
dum), FEZ-1 (Legionella gormanii), GOB (E. meningoseptica), BJP- [111], and recently IMP-1 [140] have been identified in P.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY 283

aeruginosa clinical isolates. Interestingly, IMP-1 has been found and IMP-18 in several P. aeruginosa isolates collected during
in A. baumannii isolates [146] and IMP-18 has been described 2004–2005 [155].
in a K. oxytoca isolate [147]. In Argentina, IMP-1 was first In contrast to Europe, few reports of VIM exist in
reported in three Acinetobacter spp. isolates in 2005 [148] Enterobacteriaceae in Latin America and the Caribbean. In
and then in two A. junii isolates identified in 2005–2006 Venezuela, VIM-2 was first reported in 2008 among isolates
[149]. This was followed by several reports of IMP-13 [150– of K. pneumoniae [185] and recently in Enterobacter spp.
152] and IMP-16 [140,152] in P. aeruginosa isolates. Among [186,187]. Since 2009 in Mexico, VIM-2 has been reported in
Enterobacteriaceae, E. cloacae, K. oxytoca and C. freundii har- a few isolates of E. cloacae and K. oxytoca [188] and VIM-23 has
boring blaIMP-8 have been reported in this country [153,154]. In been described in E. cloacae, K. oxytoca, C. freundii, and E.
Costa Rica, IMP-18 was first reported among several P. aerugi- aerogenes [140,147]. In addition, VIM-24 has been reported in
nosa isolates collected during 2004–2005 in a tertiary-level a couple of K. pneumoniae isolates from Colombia [189,190]. In
hospital [155]. In Puerto Rico, IMP-18 has been identified in Argentina, a P. rettgeri isolate expressing VIM-2 [153] and
several P. aeruginosa isolates collected from different hospitals seven S. marcescens expressing VIM-16 [191] were reported
since 2006 [85,156,157]. A P. aeruginosa isolate simultaneously in 2011 and 2013, respectively.
producing IMP-18 and KPC-2 was reported in 2012 [157]. Interestingly, other non-fermenters different that of
Additionally, IMP-type carbapenemases have been recently Pseudomonas spp. carrying the blaVIM gene have been
described in P. aeruginosa isolates from Peru [158] and reported in Latin America and the Caribbean. VIM-2-producing
Venezuela [159]. In Colombia, only one clinical isolate identi- Brevundimonas diminuta was once reported in 2012 in an
fied as P. rettgeri has been found to carry blaIMP [160]. immunocompromised patient from Argentina [192]. A. bau-
Overall, studies comprising carbapenem-resistant P. aerugi- mannii clinical isolates producing VIM-1 [193] or VIM-4 [146]
nosa isolates in Latin America and the Caribbean have have been reported in Mexico.
reported rates of IMP production of 1–16%. Additionally, coproduction of VIM-2 and KPC-2 in P. aerugi-
nosa was reported for the first time in the world in Colombia
in 2012 [175,176], followed by the copresence of the same
3.2. Verona integron-encoded metallo-β-lactamase
enzyme variants in P. aeruginosa from Chile [54] and E. cloacae
At the time of this review, 51 VIM variants (ftp://ftp.ncbi.nlm. from Venezuela [187]. Also, coproduction of VIM-24 and KPC-2
nih.gov/pathogen/betalactamases/Allele.tab) have been has been found in K. pneumoniae in Colombia [190]. The
described around the world but VIM-2 has actually spread coexpression of VIM-2 and VIM-11 with GES-5 was reported
and become the most commonly metallo-β-lactamase world- in 2012 in Mexico [110]. Overall, in Latin America and the
wide [2]. Like IMPs, VIMs exhibit a very broad hydrolytic profile Caribbean, rates of VIM-producing organisms are 2–19%
and are encoded by genetic determinants harbored in cas- among carbapenem-resistant P. aeruginosa isolates.
settes by generally class 1 integrons [161]. The first VIM-type
carbapenemase (VIM-1) was identified in isolates of P. aerugi-
nosa from Verona, Italy in 1997 [162,163], followed by VIM-2 in
3.3. São Paulo metallo-β-lactamase
a P. aeruginosa strain isolated in France in 1996 but reported
in 2000 [164]. SPM comprises a family of mobile metallo-β-lactamases in
In Latin America, VIM-2 was identified for first time in 2002 in which only one allelic variant (SPM-1) has been described
Chile and Venezuela in isolates of P. fluorescens and P. aeruginosa, [194]. It confers broad-spectrum resistance to β-lactams
respectively [130,165]. Several VIM-2-producing P. aeruginosa except for aztreonam which is not a good substrate. SPM
clinical isolates have since been reported in these countries production has been mostly found in P. aeruginosa so far but
[54,140,166–170]. VIM-2 has also been reported in P. aeruginosa clinical isolates of A. baumannii harboring blaSPM-1 have been
isolates in Brazil since 2005 [90,122,133,140,171,172]. In described [195]. The blaSPM-1 gene is either plasmid encoded
Colombia, VIM-8 was initially described in 2004 in an outbreak [195–197] or chromosomal [198], but has not been found as
of multidrug-resistant P. aeruginosa in one hospital [173], fol- part of a gene cassette nor in the vicinity of a class 1 integron
lowed by the report of VIM-2 in P. aeruginosa isolates in several [199]. It has been rather associated with insertion sequence
cities across the country since 2006 [26,140,174,175]. Recently, it common region (ISCR) elements such as the ISCR4 variant
has been found the ST111 as the predominant lineage of carba- which can be responsible for mobilization and expression of
penem-resistant P. aeruginosa strains carrying the blaVIM-2 gene blaSPM-1 via a mechanism named rolling-circle transposition
[176,177]. In Argentina, the first VIM-type enzyme identified was [197,199]. Recently, blaSPM-1 has been located within integra-
VIM-11 in 2002 in P. aeruginosa isolates [178–180], followed by tive and conjugative elements such as the transposon Tn4371
VIM-2 described in several P. aeruginosa [180] and P. putida [200,201].
[181,182] isolates. The first case of human infection caused by SPM-1 was originally described in a P. aeruginosa clinical strain
P. fulva in the world was reported in 2010 in Argentina; this isolated in 2001 in São Paulo, Brazil [196]. Since then, SPM-1 has
isolate carried the blaVIM-2 gene cassette [183]. In Mexico, there been described in virtually all regions of this country and has
are reports of P. aeruginosa producing VIM-2 [110,111,140,144] been linked to the high-level carbapenem resistance observed in
and VIM-11 [110]. Likewise, VIM-2-producing P. aeruginosa iso- multiple P. aeruginosa hospital outbreaks with high mortality
lates have been reported in Uruguay (2011, 184] and Peru (2013) [106,107,122–125,127,129,130,171,172,197,202–216]. Rates of
(Edgar Gonzales-Escalante, personal communication). A recent SPM-positive P. aeruginosa in these studies vary from 5% to as
study in Costa Rica reported simultaneous expression of VIM-2 high as 95% of all carbapenem-resistant isolates. Dissemination
284 K. ESCANDÓN-VARGAS ET AL.

of the SPM-1-producing P. aeruginosa clone SP/ST277 has been becomes chromosomally integrated [222]. blaNDM is associated
extensively documented throughout Brazil [126,202,217–219]. It with different types of insertion sequences [194].
should be noted that SPM-1 has been reported in P. aeruginosa The first NDM-1 report in Latin America came from
ST235 in this country as well (http://pubmlst.org/paeruginosa/) Guatemala in two isolates of K. pneumoniae collected in
[126]. Overall, SPM-1 is a β-lactamase with great epidemiological 2011 [223], followed by Colombia in which a nosocomial
importance in Brazil since it is by far the most prevalent type of outbreak of NDM-1-producing K. pneumoniae occurred in a
metallo-β-lactamase and display a colistin-only-sensitive pheno- neonatal unit during 2011–2012 [224]. Since then, diverse
type in most isolates [202,217,219,220]. Additionally, nine P. NDM-1-producing Enterobacteriaceae isolates have been
aeruginosa isolates coharboring blaSPM-1 and blaKPC-2, and a P. increasingly reported in Colombia including K. pneumoniae,
aeruginosa isolate coharboring blaSPM-1, blaKPC-2, and blaVIM-2 P. rettgeri, E. coli, M. morganii, and S. fonticola [225–228].
have been reported in Brazil [90]. Few isolates of Acinetobacter species (A. baumannii, A. hae-
There were no reports of SPM outside Brazil in the world until molyticus, A. faecalis, A. nosocomialis) [225–228], and P. aer-
2007 when one strain of SPM-1-producing P. aeruginosa was uginosa [226,227] have been found to harbor NDM-1 in
isolated from a patient hospitalized in Switzerland [198]. This Colombia. Recently, the complete genome sequences of
was followed by the report of six clinical isolates of A. baumannii four different NDM-1 gram-negative producers were pub-
harboring blaSPM-1 collected between 2009 and 2010 in Iran lished [228]. In Uruguay, NDM-1 was initially identified in P.
[195]. Last, in 2013, a SPM-1-producing P. aeruginosa isolate rettgeri isolates in 2012 [229], but there exists a report of this
was cultured from an impatient in the UK for the first time metallo-β-lactamase in a M. morganii isolate [230]. In
[201]. Both P. aeruginosa strains collected in Switzerland and Paraguay, A. baumannii [229] and A. pittii isolates [231]
the UK were isolated from patients previously admitted to were found to carry blaNDM-1 in 2012. Also, in the same
Brazilian hospitals for medical assistance and were genetically year, one NDM-1-producing A. baumannii isolate was
related to the P. aeruginosa clone SP/ST277 which is endemic in reported in Honduras [232]. Since 2013, NDM-1 has been
Brazil. reported in clinical isolates of P. rettgeri, K. pneumoniae, E.
It is unclear why the epidemiology of SPM-1 has been mostly coli, and E. cloacae in Mexico [233–235], and in P. rettgeri, E.
restricted to Brazil in contrast to the worldwide dissemination cloacae, E. hormaechei, M. morganii, E. coli, K. pneumoniae, C.
observed for the other acquired metallo-β-lactamases IMP, VIM, freundii, A. baumannii, and A. pittii in different regions of
and NDM [220]. The different types of mobile genetic elements Brazil [236–245]. In 2014, NDM-1 was reported in a K. pneu-
involved in the horizontal transfer of SPM could be related to this moniae isolate in Chile [75], followed by Argentina in which
phenomenon [194]. Nevertheless, the risk of SPM dissemination NDM-1 has been identified in three genetically related iso-
is imminent. Andrade et al. have highlighted the opportunity for lates of P. rettgeri [246] and one A. junii isolate [247]. A Pan
SPM to spread globally after international gatherings, including American Health Organization epidemiological update in
the 2016 Olympic Games recently held in Rio de Janeiro [220]. 2014 has also given account of the presence of NDM-1 in
Further, there exists the possibility that blaSPM-1 spreads beyond K. pneumoniae, E. cloacae, E. coli and A. baumannii in
non-fermenting gram-negative aerobes to a broader range of Nicaragua and in E. coli in Costa Rica [248]. More recently,
bacteria. NDM-1 has been reported in a strain of A. soli from Cuba
Intriguingly, isolates belonging to the P. aeruginosa clone [249], in two K. pneumoniae isolates from Jamaica [250] and
ST277 have been submitted to the MLST database from Guadeloupe, French West Indies [251], and in two K. pneu-
Austria, Australia, Central African Republic, China, and Spain moniae and E. coli isolates from Venezuela [140,252]; the E.
(http://pubmlst.org/paeruginosa/), showing the potential of coli isolated in the latter country was also found to harbor
SPM-1 to become widespread globally. However, there are the mcr-1 gene [252]. Finally, NDM-producing P. mirabilis, P.
no data regarding the presence of blaSPM-1 in those isolates rettgeri, E. coli, and K. pneumoniae have been detected in
nor known epidemiological links of patients from those coun- Peru (Edgar Gonzales-Escalante, personal communication).
tries with Brazil. Until now, the acquisition of SPM-1 in P. The coexpression of other carbapenem resistance determi-
aeruginosa ST277 seems to be a feature limited to Brazil with nants has been described in a few isolates producing NDM,
a few exceptions of international spread. including KPC in K. pneumoniae from Colombia [225–227],
KPC-2 in Enterobacter spp. from Brazil [242,243], and OXA-23
in A. baumannii from Colombia [226].
3.4. New Delhi metallo-β-lactamase
4. Class D carbapenemases
Currently, the NDM family members number up to 16 variants
(http://www.lahey.org/studies). The first international descrip- Class D β-lactamases (oxacillinases) are an ever-expanding
tion of NDM took place in 2008 in E. coli and K. pneumoniae group of enzymes that includes over 500 members/variants
isolates from a Swedish patient who had previously been hospi- with a wide variety of amino acid sequences and hydrolyzing
talized in New Delhi, India [221]. Since then, NDM-type enzymes profiles [253,254] (ftp://ftp.ncbi.nlm.nih.gov/pathogen/betalac
have spread worldwide and are present largely in tamases/Allele.tab). These enzymes confer resistance to
Enterobacteriaceae, but also in non-fermenting gram-negative amino- and carboxypenicillins and the majority are neither
bacteria and Vibrionaceae. NDM efficiently hydrolyzes all β-lac- inhibited by β-lactamase inhibitors nor EDTA. Only some sub-
tams except monobactams such as aztreonam. The blaNDM-1 groups of oxacillinases, called carbapenem-hydrolyzing class D
gene is often carried by different plasmids and, more rarely, β-lactamases (CHDLs), display carbapenemase activity. To
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY 285

rarely from Enterobacteriaceae (P. mirabilis and K. pneumoniae)


[254,260].
In 1999, an outbreak of carbapenem-resistant A. baumannii
producing OXA-23 occurred for the first time in Latin America in
two hospitals in Curitiba, Brazil, in which five of the eight patients
infected with this strain died [261]. Thereafter, Carvalho et al.
reported that 96 of 110 (87%) imipenem-resistant A. baumannii
isolates from 8 hospitals in Rio de Janeiro carried the blaOXA-23
gene [262]. Since then, several other publications have reported
the presence and wide dissemination of OXA-23 in A. baumannii
throughout Brazil [134,263–276]. The blaOXA-23 gene have also
been reported in this country in non-baumannii Acinetobacter
species [272,276,277], including A. nosocomialis and A. pittii.
Interestingly, Carvalho et al. provided evidence that imipenem-
susceptible A. baumannii isolates may harbor blaOXA-23 gene and,
consequently, silently spread this resistance determinant in the
hospital environment [278]. In Buenos Aires, Argentina, the mole-
cular characterization of 41 epidemiologically unrelated A. bau-
mannii isolates ended in the identification of 26 of them carrying
Figure 3. Class D carbapenemases distribution in Latin America and the Caribbean. the blaOXA-23 gene, which were collected between 2001 and 2006
[279]. Other authors have also reported OXA-23-producing A.
baumannii isolates in Argentina [280–282], collected even in
date, at least twelve major phylogenetic subgroups or gene 1995 [281]. In Venezuela, Fritsche et al. reported the first OXA-
clusters of CHDLs have been acknowledged [254] and the 23-producing Acinetobacter spp. strain isolated in 2002 [148].
number of new variants has increased alarmingly during the Thereafter, Cuaical Ramos et al. identified the presence of OXA-
last years. Although CHDLs are not as efficient hydrolyzing 23 in 56/60 (93%) A. baumannii isolates with diminished suscept-
carbapenems in vitro as other carbapenemases, their presence ibility to carbapenems collected during 2008 [283]. In Colombia,
is a significant cause of carbapenem resistance in Villegas et al. published a study of 65 OXA-23 producing A. bau-
Acinetobacter species and Enterobacteriaceae worldwide mannii isolates which were collected during 2005 from a surveil-
[114]. Overall, the hydrolytic profile of these enzymes spare lance project conducted in seven tertiary care hospitals from six
the extended-spectrum cephalosporins. Whereas the mem- cities [284]. This work was the first description of OXA-23 nation-
bers belonging to OXA-51 subgroup are chromosomally wide dissemination in Latin America in which the prevalence of
located and intrinsic to A. baumannii, the other subgroups carbapenem resistance was related mostly to clonal spread of
comprise acquired CHDLs that can be either chromosomally OXA-23 producers. Since then, OXA-23 has been predominantly
or plasmid encoded [254]. Mobile elements (i.e. plasmids) have found among carbapenem-resistant A. baumannii isolates (75–
in part contributed to the dissemination of CHDL genes invol- 100%) collected in the country [285–291] and seldom in A. noso-
ving diverse STs [254,255]. Mobilization and enhanced expres- comialis [291]. In Chile, OXA-23 has been reported in Acinetobacter
sion of most blaOXA genes is often associated with insertion baumannii isolates collected since 2007 [282,292]. In Jamaica, 2/82
sequences (e.g. ISAba1) that provide additional promoter Acinetobacter spp. collected during 2009–2011 were reported to
sequences leading to carbapenem resistance or decreased harbor blaOXA-23 [293]. In Mexico, there are recent reports from
susceptibility [256]. multicenter studies which provide evidence of the presence of
Apart from the OXA-51-related family typically present in A. OXA-23 and its novel variants OXA-239 and OXA-469 in A. bau-
baumannii, six subgroups of acquired CHDLs have been iden- mannii isolates recovered in 2006–2013 [294,295]. Between 2010
tified in Latin America and the Caribbean, namely OXA-23-like, and 2012, the first National Surveillance Program of Acinetobacter
OXA-40/24-like, OXA-58-like, OXA-48-like, OXA-143-like, and spp. in Cuba revealed a high prevalence of blaOXA-23 (130/220,
OXA-235-like enzymes (Figure 3). 59%) among meropenem-non-susceptible A. baumannii-calcoace-
ticus complex isolates [249]. Most recently, the presence of OXA-23
has been reported in a few A. baumannii isolates from Ecuador
4.1. OXA-23 subgroup [282,296], Bolivia [282,297], Guadeloupe (French West Indies)
[251], Paraguay [282], and Uruguay [282].
OXA-23, formerly referred to as ARI-1 (for Acinetobacter resistant to In terms of molecular epidemiology, a distinct genetic diver-
imipenem), was first reported in 1993 in a multidrug-resistant A. sity has been described for OXA-23-like-producing carbapenem-
baumannii strain which had been isolated in 1985 from a patient in resistant A. baumannii isolates collected in Argentina [281], Brazil
Edinburgh, Scotland [257,258]. Later, it was demonstrated that [267,272–275], Colombia [289,290], Mexico [294,295], and Bolivia
OXA-23 was plasmid mediated [259]. Members belonging to the [297], being CC79P/CC113B, CC636B, CC15P/CC104B,, and CC110B
OXA-23-like family have been described in both chromosomes and the main clones involved in the spread of blaOXA-23 in the region.
plasmids, and have spread worldwide with a very high prevalence In Latin America, MLST allelic profiles have rarely been related to
[254,255]. OXA-23-like enzymes are the most prevalent acquired CC92B [295,298] which is one of the worldwide predominant
CHDLs and have been isolated mainly from Acinetobacter spp. and OXA-23 A. baumannii clones.
286 K. ESCANDÓN-VARGAS ET AL.

4.2. OXA-40/24 subgroup blaOXA-65 [280,310], blaOXA-66 [267,271,280,287], blaOXA-69


[267,280,286,287,311], blaOXA-77 [280], blaOXA-78 [280], blaOXA-83
The first OXA-24, later renamed OXA-40, was first identified
[193], blaOXA-89 [280], blaOXA-94 [228], blaOXA-95 [267,287], blaOXA-
from an outbreak caused by A. baumannii in 1997 in Madrid,
99 [287], blaOXA-100 [138], and blaOXA-132 [267]. blaOXA-66, blaOXA-64,
Spain [299]. OXA-40/24 subgroup is less disseminated than
blaOXA-65, and blaOXA-69 seem to be the most widespread blaOXA-51-
OXA-23 subgroup but there are increasing reports of these
like alleles. Further, blaOXA-51-like has been detected in a few isolates
enzymes in distant locations such as Asia and the Americas
of A. nosocomialis and A. pittii in southern Brazil [277].
[254]. A relevant OXA-40/24-like variant, OXA-72, is a point
Some years ago, there was controversy regarding the role
mutant of OXA-40 which was first reported in an A. baumannii
of OXA-51-like β-lactamases on A. baumannii carbapenem
isolate from Thailand in 2004 (GenBank accession no.
resistance due to their weak carbapenemase activity and the
AY739646) and then in some Asian and European countries.
identification of these enzymes in both carbapenem-resistant
In Latin America, OXA-40/24-like carbapenemases were
and -susceptible strains [254,280]. Currently, there is no doubt
initially reported in two Acinetobacter spp. isolates collected
that these enzymes play a role in resistance or decreased
in 2007 from Mexico and Brazil [300]. Since then, in Mexico,
susceptibility largely associated with the insertion sequence
the variants OXA-40 [146,147,295] and OXA-72 [193,295,301]
ISAba1 or ISAba9, which when located upstream of the blaOXA-
have been reported in A. baumannii isolates. Two of these
51 gene may promote its expression conferring resistance to
studies, which comprised a large number of A. baumannii
carbapenems [254,256,312]. Concern remains regarding the
isolates collected during 2004–2012, found that 26–50%
possibility that all A. baumannii isolates become intrinsically
harbored the blaOXA-72 gene [193,301]. In Brazil, OXA-72 is
resistant to the carbapenems as blaOXA-51-type genes repre-
the only variant found in A. baumannii isolates to date
sent a direct reservoir of β-lactamase-mediated carbapenem
[265,275,302,303]. Vasconcelos et al. reported the interhos-
resistance [254,280].
pital dissemination of A. baumannii carrying blaOXA-72 in
Further, because the kinetic properties of few OXA-51-like
Brazil for the first time in Latin America and the Caribbean
enzymes have been detailed [306,313], characterization stu-
[275]. In Colombia, Montealegre and colleagues identified in
dies of other variants are needed to determine whether all
2010 the first case of OXA-72 in an isolate of A. pittii from a
OXA-51 variants confer carbapenem resistance.
70-year-old woman [304]. After that report made in 2012,
Saavedra et al. described the first Colombian OXA-72-produ-
cing A. baumannii strain cultured from the peritoneal fluid; 4.4. OXA-58 subgroup
the strain was collected in 2006, four years earlier than the
OXA-58-like enzymes belonging to this subgroup are globally
OXA-72-producing A. pittii [287,305]. Few isolates of A. bau-
distributed with a very high prevalence in southern European
mannii carrying blaOXA-40/24-like have been reported in
Mediterranean countries [254]. The founding member, OXA-
Argentina [147] and Chile [292]. Recently, Jamaica [293],
58, was first detected in Toulouse, France in 2003 [314], but
and Cuba [249] have also reported blaOXA-40/24-like in
other works have identified the earliest known OXA-58 produ-
15–16% of carbapenem-non-susceptible A. baumannii iso-
cers in the world. Cayô et al. have recently reported two OXA-
lates. Ecuador is the latest Latin American country in report-
58-producing A. seifertii isolates collected in São Paulo, Brazil
ing OXA-72 from a nosocomial outbreak due to A.
in 1993 and 1997 [315], and Coelho et al. found the same
baumannii at two medical centers in Guayaquil, finding
carbapenemase in six A. baumannii/calcoaceticus complex iso-
blaOXA-72 in 86% of 35 isolates tested [282,296].
lates collected in Buenos Aires, Argentina in 1995 [307].
Overall, several studies have continued to report this glob-
ally scattered OXA variant in Latin America and the Caribbean.
4.3. OXA-51 subgroup
In Argentina, OXA-58 has been detected in A. baumannii [279–
The blaOXA-51-type genes are naturally harbored on the chro- 281] and A. junii [149], showing a polyclonal pattern. In
mosome of A. baumannii and are therefore ubiquitous in this Venezuela, researchers identified in a molecular epidemiology
species [254,280]. OXA-51 subgroup includes the greatest study two OXA-58-producing A. baumannii isolates collected
number of allelic variants (at least 95) [254]. The huge allelic in Mérida during 1998–1999 [316]. Another study conducted
diversity of these chromosomally encoded β-lactamases sug- in six hospitals in Caracas confirmed the presence of this
gests that A. baumannii has been under dramatic selective carbapenemase in four A. baumannii isolates [283]. In Brazil,
pressure driven by antibiotic use [254]. two reports have described a couple of A. baumannii isolates
The founding member of this subgroup, OXA-51, was identi- collected in 2004 and 2005 carrying blaOXA-58 [265,268].
fied for first time in six A. baumannii isolates from Buenos Aires, Alarmingly, OXA-58 has been identified since 2006 in a num-
Argentina collected between 1993 and 1994 [306]. However, ber of other countries including Mexico [294,295,301], Chile
Merkier and Centrón studied 194 A. baumannii isolates collected [147,292,300], Bolivia [308,309], Puerto Rico [94], Jamaica [293],
from 1982 to 2005 and determined the presence of blaOXA-51-type and Cuba [249]. In Colombia, the blaOXA-58 gene was detected
genes in all of them [280]. Several studies conducted in different for the first time in one A. pittii isolate [291].
nations from Latin America and the Caribbean have looked for
blaOXA-51-like, finding its presence in virtually all A. baumannii iso-
4.5. OXA-48 subgroup
lates [94,134,138,193,249,263,265,267,269–276,278,280,283,284,
286–290,292–296,301,307–309]. Sequencing of these genes has In contrast to the clear predominance of the other OXA-type
revealed the presence of blaOXA-51 [280], blaOXA-64 [232,286,297], carbapenemases in Acinetobacter spp. strains, OXA-48-like
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY 287

enzymes prevail in K. pneumoniae and other Enterobacteriaceae 4.7. OXA-235 subgroup


members [254]. However, OXA-48-like has been reported in A.
This OXA subgroup includes the OXA-235 carbapenemase
baumannii as well. OXA-48 was first discovered in a clinical K.
which was found on the chromosome and plasmid of an A.
pneumoniae isolate recovered in Istanbul, Turkey in 2001 [317],
baumannii isolate recovered in Mexico in 2007 [310]. Other
and now has spread to Middle East, North Africa, Europe, and
nine blaOXA-235-like-harboring A. baumannii isolates were also
most recently the USA and Japan [254]. OXA-48-like enzymes
obtained from the USA. As expected for most CHDLs, OXA-235
represent one of the most threatening carbapenemases in the
hydrolyzes penicillins and carbapenems but spares extended-
last decade [254].
spectrum cephalosporins.
In Latin America and the Caribbean, the OXA-48-related
CHDLs (variants OXA-48, OXA-163, OXA-247, and OXA-370)
have been detected in Enterobacteriaceae species in 5. Conclusion
Argentina, Brazil, and Colombia. OXA-48 has been reported
in few publications, being identified in a K. pneumoniae Carbapenemases have become a public health problem of
isolate from Argentina [318] and in a K. oxytoca from global dimensions since they threaten the efficacy of most
Colombia [319]. In 2008, OXA-163, an OXA-48 variant differ- β-lactams including the carbapenems. In Latin America and
ing by a single amino acid substitution and a 4-amino-acid the Caribbean, carbapenemases belonging to the three
deletion, was discovered in Buenos Aires, Argentina in a K. Ambler molecular classes have been identified. Of note,
pneumoniae and an E. cloacae isolates as part of a multidrug mobile genetic elements such as plasmids and integrons
resistance survey [320]. OXA-163 is the first CHDL able to play a role facilitating the dissemination of several types of
hydrolyze extended-spectrum cephalosporins but has a carbapenemase-encoding genes. Predominantly, KPC-type
weaker carbapenemase activity when compared with OXA- enzymes have been described in Enterobacteriaceae,
48. Other studies have reported OXA-163 in few isolates of metallo-β-lactamases in P. aeruginosa, and OXA-type
K. pneumoniae in Argentina [54,147,318,321]. Interestingly, enzymes in A. baumannii. The increased frequency of reports
Gomez et al. reported in Buenos Aires the intrapatient on carbapenemases in Latin America and the Caribbean
emergence of the novel carbapenemase gene blaOXA-247 in suggests they have successfully spread and become ende-
a K. pneumoniae strain from a patient previously infected mic in some countries. A low threshold for suspicion and
with a genetically related K. pneumoniae harboring blaOXA- early detection of carbapenemase-producing clinical isolates
163 [321]. OXA-247 showed susceptibility to carbapenems
are of paramount importance for appropriate treatment and
and expanded-spectrum cephalosporins similar to OXA-48. implementation of infection control measures. Rational use
On the other hand, a novel variant called OXA-370 was of antibiotics, accurate and rapid diagnostic techniques, and
originally described in an E. hormaechei isolate in Porto strict adherence to hygiene measures are needed to prevent
Alegre, Brazil [322]. This variant differs from OXA-48 by a and control the acquisition and spread of carbapenemase-
unique amino acid substitution and represents the first encoding genes; however, multidisciplinary action and poli-
report an OXA-48-like enzyme in Brazil. Recently, in Rio de tical engagement are crucial in order to tackle antimicrobial
Janeiro, the blaOXA-370 gene has been detected in 24 resistance.
Enterobacteriaceae isolates, namely 22 K. pneumoniae, 1 E.
cloacae, and 1 E. aerogenes [323].
6. Expert commentary
Carbapenems were for many years the most potent and
broad-spectrum β-lactam antibiotics, traditionally reserved
4.6. OXA-143 subgroup
for the treatment of serious gram-negative bacterial infections.
OXA-143 is the representative variant of a recently discov- For this reason, the dissemination of carbapenemase-produ-
ered subgroup of CHDLs. OXA-143 was first identified in 2004 cing Enterobacteriaceae, P. aeruginosa, and A. baumannii repre-
in an A. baumannii isolate from Brazil that was resistant to sents an alarming public health threat of global dimensions.
carbapenems but susceptible to extended-spectrum cepha- Despite radical efforts in infection control and improvements
losporins [324]. Further studies have shown the dissemina- in rapid molecular diagnostics, carbapenem-resistant gram-
tion of OXA-143 among A. baumannii isolates in different negative bacteria remain a formidable threat as few antimi-
Brazilian regions [134,265,266,273,276]. It seems that the crobial agents are reliably active and the landscape for novel
prevalence of OXA-143 (8–76%) varies geographically agents becoming commercially available in upcoming years is
depending on the circulating clones and the specific regions uncertain. The emergence of carbapenemases among diverse
and hospitals [266]. gram-negative bacteria has not spared Latin America and the
OXA-231 is a novel variant described in two A. baumannii Caribbean. Countries such as Brazil, Colombia, Argentina, and
isolates collected in Brazil in 2007 and 2008 [325,326]. Most Mexico account for the majority of these reports.
recently, two studies evidenced the first detection of OXA-253, Carbapenemase detection requires a high index of suspicion
an OXA-143 variant, in an A. baumannii isolates collected in and can be resource intensive. Diagnostic microbiology
Honduras [326] and Brazil [327]. The identification of these laboratories with sophisticated assays in addition to surveil-
variants along with the report of an OXA-255-producing A. lance programs run by research centers are essential to iden-
pittii from Indiana, USA suggests that OXA-143-type β-lacta- tifying these challenging resistance mechanisms. This may
mases are spreading in the Americas [326]. explain the underreporting or even absence of reporting in
288 K. ESCANDÓN-VARGAS ET AL.

several countries in Latin America and the Caribbean. A joint ● Based on Ambler’s molecular description, carbapenemases
effort is required from hospitals, governments and scientific are classified into class A serine-β-lactamases, class B
organizations in order to curb the overwhelming challenge of metallo-β-lactamases, and class D serine-β-lactamases.
antibiotic resistance. Early suspicion and detection along with Carbapenemases are chromosomally-encoded and/or plas-
implementation of antimicrobial stewardship programs in all mid-mediated, are found in different gram-negative bacter-
healthcare settings are crucial for the control and prevention ial species, and have different hydrolytic profiles.
of carbapenemase-producing bacteria. Efforts to improve ● Numerous and novel carbapenemases belonging to three
national and international surveillance systems as well as edu- molecular classes have been described in Latin America and
cational awareness among healthcare professionals should the Caribbean. The increased frequency of reports on car-
also be prioritized. bapenemases in the region suggests they have successfully
spread and even become endemic in some countries.
● Not metalloenzyme carbapenemase A (NMC-A), K. pneumo-
7. Five-year view
niae carbapenemase (KPC), Guiana extended-spectrum β-
In five years from now, there will be recognition of novel lactamase (GES), and Brazilian Klebsiella carbapenemase
carbapenemases and even greater dissemination of the exist- (BKC) are the class A carbapenemases described thus far
ing ones. Likewise, coexpression of other resistance mechan- in Latin America and the Caribbean.
isms (e.g. mcr-1 gene) will be increasingly reported in gram- ● Imipenemase (IMP), Verona integron-encoded metallo-β-lac-
negative pathogens. Overall, healthcare-associated infections tamase (VIM), New Delhi metallo-β-lactamase (NDM), and São
caused by carbapenemase-producing bacteria will reach an Paulo metallo-β-lactamase (SPM) are the acquired class B
unprecedented impact in terms of morbidity and mortality, carbapenemases described thus far in Latin America and the
length of hospital stay, and healthcare costs. Caribbean.
In Latin America and the Caribbean, a ‘bundle’ approach for ● The OXA-23, −40/24, −51, −58, −48, −143, and −235 sub-
the containment of these organisms will be deployed. This will groups are the class D carbapenemases described to date in
be accomplished through integrated strategies, including Latin America and the Caribbean.
accurate, affordable, and readily accessible diagnostics, reli- ● Overall, KPC-type enzymes have been described in
ably effective new antimicrobials, active surveillance, success- Enterobacteriaceae, metallo-β-lactamases in P. aeruginosa,
ful antimicrobial stewardship programs, and augmented and OXA-type enzymes in A. baumannii.
infection control practices. Research funding and support for
the description of resistance mechanisms, validation of current
Funding
infection control practices, and antimicrobial development will
be prioritized by the government. Institutions that practice This paper was not funded.
infection control, support state-of-the-art microbiology labora-
tories, and fund stewardship programs will receive recognition
and incentives for their foresight. Collaborative and joint Declaration of interest
efforts will lead to an enhanced understanding and awareness MV Villegas has received research grants and/or consultant fees from
of the epidemiology of carbapenemases, and the contribution Merck Sharp & Dohme (MSD), Merck Colombia, Pfizer, and AstraZeneca.
of antimicrobial use and the environment in the propagation The authors have no other relevant affiliations or financial involvement
with any organization or entity with a financial interest in or financial
of these enzymes.
conflict with the subject matter or materials discussed in the manuscript
On the other hand, antibiotic alternatives would be cur- apart from those disclosed.
rently in development or in clinical trials for the treatment of
multidrug-resistant, extensively drug-resistant, and pandrug-
resistant bacteria infections. Recognition and incentives for all ORCID
of the above is imperative in the ongoing struggle against Kevin Escandón-Vargas http://orcid.org/0000-0002-7173-7486
antimicrobial resistance and to prevent antimicrobials from
essentially becoming obsolete.
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