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James Lee Enzyme Kinetics Solution PDF
James Lee Enzyme Kinetics Solution PDF
Solution 2.1
y=0.033× + 0.03a 1
i) = 1.65mumol/min
0.1 mg/ml x 0.1ml
S vs t Graph
1.2
1 y = 0.033x + 0.0391
0.8
0.6
0.4
0.2
0
0 5 10 15 20 25 30 35
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.2
→
←
→
←
a) Michaelis-Menten approach
d[p]
( )
dt
( )
ubstitute into :
[( ) ( ) ( )] ( )
( ) ( )( ) ( )( ) ( )( )
Make as a subject:
( ) ( )( ) ( )( )
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
( )( ) ( )( )
( )
( ) [( )( )]
( )( )
( )
( ) ( )( )
ub into :
( )( ) ( )( )
( )
( )( )( ) ( )( )( )
( )
Make as a subject,
( )( )( )
( )( ( )( ))
( )( )( )
( )
( )( ( )( ))
( )( )( )
( )
( )
( ) ( )( )
ub into ,
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
d[p] ( )( )( )
( )
dt ( )
( )( )
( )( )( )
)
( )
( )( )
Since ( )
( )( )
)
( )
( )( )
b) Since [ ] [ ]
d[p] ( )( )
dt ( )( )
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.3
(ES)1 k3 (ES)2
(ES)2 k2 E+P
[ ]
V= = k5 [ES] 2
[E] = [E0]-[ES]-[ES]2
k2 = [E] [S]
k1 [ES]1
k2 + [S]
k1
k4 = [ES]1
k3 [ES]2
= Vm [S]
k2 k4 + k4 [S] + [S]
k1 k3 k3
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.4
a) Michaelis-Menten approach
d[p]
( )
dt
( )
ubstitute into :
[( ) ( ) ( )] ( )
( ) ( )( ) ( )( ) ( )( )
Make as a subject:
( ) ( )( ) ( )( )
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
( )( ) ( )( )
( )
( ) [( )( )]
( )( )
( )
( ) ( )( )
ub into :
( )( ) ( )( )
( )
( )( )( ) ( )( )( )
( )
Make as a subject,
( )( )( )
( )( ( )( ))
( )( )( )
( )
( )( ( )( ))
( )( )( )
( )
( )
( ) ( )( )
ub into ,
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
d[p] ( )( )( )
( )
dt ( )
( )( )
( )( )( )
)
( )
( )( )
Since ( )
( )( )
)
( )
( )( )
b) Briggs-Haldane approach
→
←
→
←
→
←
d(p)
( )
dt
Make as a subject,
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Substrate consumption,
d( )
( )( ) ( )( ) ( ) ( )
dt
d( )
( )( ) ( ) ( )
dt
ubstitute into :
( )( ) ( ) ( )( ) ( )
( )( ( ) ) ( )( ) ( )
( )( ( ) ) ( ) ( )( ) ( )( ) ( )
( )( ( ) ( )) ( ) ( )( ) ( )
( ) ( )( ) ( )
( )
( ( ) ( ))
ubstitute into
( )( ) ( )( )
( ) ( )( ) ( )
( )( ) )( )
( ( ) ( ))
( ) ( ) ( ) ( )( ) ( ) ( )
( )( ) )
( ( ) ( ))
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
( )( )( ( ) ( ))
( ) ( ) ( ) ( )( ) ( ) ( )
( )( ( ) ( ) ( ) )( ( ) ( )) ( ) ( )
( ) ( )
( )
( ( ) ( ) ( ) )( ( ) ( ))
ubstitute into
d(p) ( ) ( )
(
dt ( ( ) ( ) ( ) )( ( ) ( ))
d(p) v ( ) ( )
dt ( ( ) ( ) ( ) )( ( ) ( ))
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.5
x-intercept= - 1
km
y-intercept= 1/ V more
V max = 0.275
x-intercept , y= 0
0.0172x + 3.6342=0
0.0172x = -3.6342
x= -211.291
x= -1/km
km = 1/211.291
= 0.00473
Longmuir Plot
1/Vm = m = 3.3133
Vm=0.302
Km = 0,0191x 0.302
= 0.00577
Eadie-Hofstee Plot
-Km = m = -3.3133
Km=0.302
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
y-intercept= Vm = 0.2645
Langmuir Plot
s s/v
0.0032 0.028829
0.0049 0.033108
0.0062 0.043357
0.008 0.048193
0.0095 0.0475
Lineweaver-Burk Plot
1/s 1/v
312.5 9.009009
204.0816 6.756757
161.2903 6.993007
125 6.024096
105.2632 5 Kinetic Parameters
Type of Plot
Vmax Km
Eadie-Hofstee Plot
Langmuir 0.2750 0.0047
v/s v Lineweaver-Burk 0.0191 0.0057
34.6875 0.111 Eadie-Hofstee 0.2645 0.0043
30.20408 0.148 Non-Linear Regression 0.2000 0.0032
23.06452 0.143
20.75 0.166
21.05263 0.2
Langmuir Plot
0.06
0.04
0.03
0.02
0.01
0
0 0.002 0.004 0.006 0.008 0.01
Eadie-Hofstee Plot
0.25
0.2
0.15
y = -0.0043x + 0.2645
0.1
0.05
0
0 5 10 15 20 25 30 35 40
0.2
0.15
0.1
0.05
0
0 0.002 0.004 0.006 0.008 0.01
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.6
Enzyme is preserved,
( )
Assumptions:
( )
𝑑(𝐸𝑆)
d( ) [𝐸𝑂 ]small, 𝑑𝑡
neg igib e
dt
( )
( )( ) ( ) ( )
( )( ) ( )( )
( )( )
( ) ( )
( ( ))( )
( )
( )
( ) ( )
( )
( )
( )( ( ) ) ( )
( )
( )
( ( ) )
Substitute into
𝑣𝑚 𝑘 𝑘 𝐸𝑜
d(p) ( )
v ( )
dt ( ( ) ) 𝑘 𝑘
𝐾𝑚
( )
𝑘
( ( ) )
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
v s
v
( ( ) )
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.7
rSv = V
[ ]
=
[ ]
[ ]
=
[ ]
= 60mol/m3.min
m = Vmax = 6.3852
y- intercept = - Km = 59.571
Km = - 59.571
F = 0.0001m3/min
V = 0.0003m3
Cs=165mol/m3
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Data :
Cs t t/ln(Cso/Cs) (Cso-Cs)/ln(Cso/Cs)
1 1 0.175322 52.42135
5 5 1.221197 72.0506
10 10 2.940141 85.26409
20 20 7.385387 103.3954
Graph :
(Cso-Cs)/ln(Cso/Cs)
120
y = 6.3852x + 59.571
100
80
(Cso-Cs)/ln(Cso/Cs)
60
Linear ((Cso-
40 Cs)/ln(Cso/Cs))
20
0
0 2 4 6 8
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.8
a) Km =0.01 mol/L
t= 5minutes
[ ]
=
[ ]
Solution 2.9
Km = 0.03mol/L
rmax = 13mol/L min × 60 = 780mol/L hr
F=10L/Hr
Cs=10mol/L
F=10L/Hr
Cs=0.5mol/L
CSTR
a) V = ?
Km ln + (Cs0 - Cs ) = rmax t
t = V/F = 0.0123
V = 0.0123 × 10
= 0.123liter
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.10
Km = 10g/L
rmax = 7g/L.min
a)
F=0.5L/min
Cs0=50g/L F=0.5L/min
1L Cs1=?g/L 1L
F=0.5L/min
Cs2=? g/L
( s )
0.5 (50 – Cs1) = (1)
s
(25-0.5Cs1)(10+ Cs1)=7Cs1
250+25Cs1-5Cs1-0.5Cs12=7Cs1
0.5Cs12-13Cs1-250=0
Cs1=38.86g/L
( s )
0.5 (38.86 – Cs2) = (1)
s
194.3+19.43Cs2-5Cs2-0.5Cs22=7Cs2
0.5Cs22-7.43Cs2-194.3 =0
Cs2=28.49g/L
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
b)
F=0.5L/min
Cs0=50g/L
2L
F=0.5L/min
Cs1=?g/L
( s )
0.5 (50 – Cs1) = (2)
s
(25-0.5Cs1)(10+ Cs1)=14Cs1
250+25Cs1-5Cs1-0.5Cs12=14Cs1
0.5Cs12-6Cs1-250=0
Cs1=29.15g/L
Since in the Cs in two reactor system is less than Cs in one reactor system, therefore two reactor
system is more efficient than one reactor system as it indicates more substrates have been
consumed to form products.
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.11
[EP] = k3
k4 [E] [P]
k5 [ES][P] = k6 [ESP]
= k7 k3 [ S ]
k8 k4 [E] [P]
From,
[ESP] = k5 [P] k2
k6k1 [E] [S]
[ ]
[E0] = [ES] + [ESP] + [E] + [EP] + ( )
[ ][ ] [ ]
[E0] = [ES] + [ESP] + [E] + +( )
[ ] [ ]
[E0] = [ES] + [ESP] + [E] [ ( )]
[ ][ ] [ ][ ] [ ] [ ]
[E0] = [ES] + + [ ( )]
[ ] [ ] [ ] [ ]
[E0] = [ES] {1 + + [ ( )]}
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
[ES] = [ ] [ ] [ ] [ ]
[ ( )]
[ ]
V= = [ ] [ ] [ ] [ ]
[ ( )]
[ ][ ] [ ][ ]
b) KSP = KPS =
[ ] [ ]
[ ][ ][ ] [ ][ ][ ]
KSP = [ ]
KPS = [ ]
[ ][ ][ ] [ ][ ][ ]
[ESP] = [EPS] =
KS KSP = KP KPS
[ ] [ ]
= [ ] [ ] [ ] [ ]
[ ]
[ ]
= [ ] [ ] [ ]
[ ] [ ]
c)
Kp=Ksp 𝑘𝑝 𝑘𝑠𝑝
[ ] ( )[ ]
( ) [ ]
[ ] [ ]
[ ][ ]
[ ] [ ][ ] [ ]
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
[ ][ ]
[ ]( [ ]) [ ]
[ ]
[ ]
( [ ])
[ ]
[ ]
( [ ])
Compare with
[ ]
[ ]
[ ]
Hence, Vmax = ( [ ])
[ ]
Km= [ ])
(
[ ] [ ]
d)
[ ]
*∫ [ ] ∫ +
[ ]
[ ]
* [ ] +
[ [ ] [ ]]
[ ] [ ] [ ] [ ]
[ ] [ ] [ ] [ ]
[ ]
[ ] [ ] n( )
[ ]
[ ] [ ]
n([ ] [ ])
[ ] [ ] [ ]
n( ) ( )
[ ]
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Y = mx+c
[ ]
Y= n ([ ]
)
M=
[ ] [ ]
X= ( )
C=
[ ] [ ] [ ]
So we can plot a graph of n ([ ]
) vs ( )
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.14
Rate:
Enzyme balance:
By rearranging Equation 5,
CE = (k2/k1) Cs CES
From Equation 2,
By rearranging Equation 6,
From Equation 3,
By rearranging Equation 7,
CE = (K4/K3) CEI
By rearranging Equation 8,
From Equation 4,
Therefore,
rp = k9 CEo /[( k2/k1)CS +1] + k10 CEo/ {1 + [1 + (k2/k1) Cs ]( K6/K5)CI } + k10 CEo / {1 + [1 + (K4/K3)CI
]( K8/K7)CS }
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.15
When y=0
X= ; X=
X = -0.016 ; X = -0.005
In Line weaver – Burk Plot and Langmuir Plot both indicates it’s a competitive inhibitor
Data :
Lineweaver
1/s 1/Vo 1/Vi
312.5 9.009009 16.94915
204.0816 6.756757 14.08451
161.2903 6.993007 10.98901
125 6.024096 9.009009
105.2632 5 8
Langmuir
s s/Vo S/Vi
0.0032 0.028829 0.054237
0.0049 0.033108 0.069014
0.0062 0.043357 0.068132
0.008 0.048193 0.072072
0.0095 0.0475 0.076
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Lineweaver-Burk Plot
20
18 y = 0.0439x + 3.8266
16
14
1/Vo
12
10 1/Vi
y = 0.0172x + 3.6342
8 Linear (1/Vo)
6 Linear (1/Vi)
4
2
0
0 100 200 300 400
Langmuir Plot
0.09
0.08
y = 2.9883x + 0.0489
0.07
0.06 s/Vo
0.05 y = 3.3133x + 0.0191
S/Vi
0.04
Linear (s/Vo)
0.03
Linear (S/Vi)
0.02
0.01
0
0 0.002 0.004 0.006 0.008 0.01
Km/Vmax = 2.9883
Km=2.9883*204.5
=611mol/L
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.16
(a) E + S ↔
ES + S ↔
→k5 E + P
( )
V= = k5 (ES) ------
( )( )
= ( )
( ) = (ES)(S)/ (k4 / k3)
K2 / k1 = (E)(S) / (ES)
K2/k1 (ES) = (E0)(S) – (ES)(S)
(ES)((k2/k1) + (S)) = (E0)(S) – (ES)(S)2 /
(ES)( (k2/k1) + (S)( ) ) = (E0)(S) – (ES)(S)2
(ES) ( (k2/k1) + (S)( ) + (S)2 ) = (E0)(S)
(ES) = (E0)(S) / (k2/k1) + (S)( ) + (S)2 --------
3→
( )
V= = k5 (E0) (S) / (k2/k1) + (S)( ) + (S)2
= Vm(S) / (k2/k1) + (S)( ) + (S)2
Solution 2.17
V= 5L
F = 1 L/hr
Cs = 10m mol/L
a) F (s0 – FCs = rp V
1(100-10) = rp (5)
Rp = 18 m mol/ L.min
M= 1/Vmax = 0.0391
Vmax= 25.57 m mol/L.min
Km/ Vm = 0.1641
Km= 4.197
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.18
[ ][ ]
[ ]
[ ][ ]
[ ]
[ ][ ]
[ ]
[ ][ ]
[ ]
[ ][ ]
[ ]
[ ]
V1 = = k5[ES1]
[ ]
[E0] = [ES1] + [E] (1+ )
[ ] [ ]
[E0] = [ES1] + [ ]
(1+ )
[ ]
[E0] = [ES1] {1 + [ ]
(1+ )}
[ ]
[ES1] = [ ]
( )
[ ]
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
[ ]
Vmt = [S1]0 – [S2] + K – ln [ ]
[ ] [ ]
[S1] = ---
[ ]
[E0] = [E] (1+ )+ [ES2]
[ ] [ ]
[E0] = [ ]
(1+ )+ [ES2]
[ ]
[E0] = [E2] [ [ ]
(1+ )+ 1]
[ ]
Vmt = [S1]0 – [S2] + KMln [ ]
[ ] [ ]–
ln[S2] = –
[ ] [ ]–
[S2] = e –
---
As [S1] increases, [ES1] also increases as in eq.3. [P1] also increases as in eq.1. This also occurs in
[S2]. As [S1] increases, [ES1] also increases as in eq.4. [P2] also increases as in eq.2
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.19
Data :
s s/v
6.7 22.33333
3.5 14
1.7 10.625
Langmuir Plot
25
y = 2.3722x + 6.2429
20
15
10
0
0 1 2 3 4 5 6 7 8
1/Vm = 2.3722
Km/Vm = 6.2429
Km = 6.2429(0.4215)
=2.63mumol/L
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Solution 2.20
a. Write the kinetic model.
Since the Michaelis constant KM is not affected by the presence of the inhibitor (which has shown on
the given table); then this enzyme reaction is noncompetitive inhibition reaction.
Kinetic Model:
E S ES
k 1, k 2
E I EI
k 3, k 4
EI S EIS
k 5, k 6
ES I ESI
k 7 ,k 8
ES
k9
EP
Assumptions:
The dissociation constant for the first equilibrium reaction is the same as that of the third
equilibrium reaction.
The dissociation constant for the second equilibrium reaction is the same as that of the
fourth equilibrium reaction.
k2 k
K S 6 K IS
k1 k5
k4 k
K I 8 K SI
k3 k7
If the slower reaction, the product formation step, determines the rate of reaction according to
Michaelis-Menten assumption, the rate can be expressed as:
rP k 9 [ ES ] (1)
[ E0 ] [ E ] [ ES ] [ EI ] [ ESI ] (2)
rP k 9 [ ES ]
(3)
[ E0 ] [ E ] [ ES ] [ EI ] [ ESI ]
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
K 2 [ E ][S ] [ E ][S ]
Ks [ ES ] (4)
K1 [ ES ] KS
K 4 [ E ][ I ] [ E ][ I ]
KI [ EI ] (5)
K3 [ EI ] KI
k8 [ ES ][ I ] [ ES ][ I ]
KI [ ESI ] (6)
k7 [ ESI ] KI
[ E ][ S ]
k9
rP KS
[ E0 ] [ E ][ S ] [ E ][ I ] [ ES ][ I ]
[E]
KS KI KI
[ E ][ S ]
k9
rP KS
[ E0 ] [ E ][ S ] [ E ][ I ] [ E ][ S ][ I ]
[E]
KS KI KS KI
Eliminate [E],
[S ]
rP KS
[ E0 ]k 9 [ S ] [ I ] [ S ][ I ]
1
KS KI KS KI
Substitute rPmax [ E0 ]k 9
[S ]
rP KS
rPmax [ S ] [ I ] [ S ][ I ]
1
KS KI KS KI
rP [S ]
rPmax K [ I ] [ S ][ I ]
K S [S ] S
KI KI
BK10110302 V.PRASARNTH RAAJ VEERA RAO – BIOPROCESS
Rearranging,
rP [S ]
rPmax K [I ] [ S ][ I ]
KS S [S ]
KI KI
rP [S ]
rPmax [I ] [I ]
K S (1 ) [ S ](1 )
KI KI