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05
LEARNING OBJECTIVES
• To determine the principal catabolites of the carbon skeleton
• To predict the major metabolic fates of these catabolites
• To discuss the aminotransferase reaction and the role played by
the coenzymes
• To predict aminoacidurias
• Provide a common template of the clinical manifestations of
patients with aminoacidurias
Overview
The assembly of new proteins requires a source of amino
acids. These building blocks are generated by the digestion of
proteins in the intestine and the degradation of proteins within
the cell.
Many cellular proteins are constantly degraded and
resynthesized. To facilitate this recycling, a complex system for
the controlled turnover of proteins is required
The amino acids produced may be used in two ways.
1. They may be used to synthesize again another set of
protein.
2. Amino acids can be completely broken to give energy
Figure 2. Fate of Molecules in Amino Acids
and waste products (in the absence of carbohydrates)
Table 1. Classification of Amino Acids (memorize!)
GLUCOGENIC
GLUCOGENIC KETOGENIC
AND KETOGENIC
(13 AAs) (2 AAs)
(5 AAs)
Alanine Tyrosine
Asparagine
Aspartate
Cysteine
NON-
ESSENTIAL
Glutamate
Glutamine
Glycine
Proline
Serine
Trans # 5 Group #25: Bañas, Datingaling, Dela Cruz, A., Dela Cruz, E. EDITOR: Chan 1 of 12
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Amino Acid Metabolism II
● Tumor cells, especially leukemic cells, require asparagine for
Removal of Amino Groups growth
● Three mechanisms for removal of amino groups from amino → Asparaginase is given to convert asparagine to aspartate;
acids thus, decreasing the amount of asparagine available for
→ Transamination tumor growth
▪ Initiates amino acid catabolism ● Depletion of aspartate will inhibit RNA and DNA synthesis of the
▪ Removal of amino nitrogen by transamination tumor
▪ Catalyzed by an aminotransferase
− The first catabolic reaction of all amino acids EXCEPT
proline, hydroxyproline, threonine, lysine
▪ The hydrocarbon skeleton that is left after the reaction is
degraded to amphibolic intermediates
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Amino Acid Metabolism II
Proline Initial reaction: conversion of arginine to ornithine →
transamination of ornithine → formation of glutamate-ɣ
semialdehyde → conversion to -ketoglutarate
● Arginase: catalyzes the cleavage of L-arginine to form urea and
L-ornithine
● Mutations of ornithine aminotransferase
→ Elevate plasma and urine ornithine
→ Associated with gyrate atrophy of the choroid plexus and
retina; because of this, brain defects occur
→ Treatment: restriction of dietary arginine
● Hyperornithinemia-hyperammonemia syndrome
→ A defective mitochondrial ornithine-citrulline antiporter
→ Ornithine cannot be transported into the mitochondria;
subsequently, it cannot act as intermediate in urea synthesis
Histidine
● Requires urocanate, 4-imidazolone-5-proprionate and N-
formiminoglutamate (FIGLU)
● Formimino group transfers to tetrahydrofolate → formation of
glutamate → formation of -ketoglutarate
● Practical application
→ Detection of folic acid deficiency: if FIGLU is excreted after
a high dose of histidine
→ Impaired hitidase: histidinemia and urocanic aciduria (benign
disorders)
Arginine
Serine
● Following conversion to or from glycine, catalyzed by serine
hydroxymethyltransferase then dehydration/deamination to
pyruvate Figure 14. Catabolism of Cysteine
● Serine catabolism merges with glycine
Threonine
● Threonine aldolase cleaves threonine to acetaldehyde and
glycine
● Oxidation of acetaldehyde to acetate is followed by formation of
acetyl-CoA
● Threonine is dehydrated to -ketobutyrate which is converted
to propionyl CoA
Alanine
● Transamination of alanine forms pyruvate
● Import ant in synthesis of non-essential AAs
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Amino Acid Metabolism II
D. Additional Amino Acids That Form Acetoacetyl-
CoA
Lysine
● This amino acid is exclusively ketogenic
● It is ultimately converted to aceto-acetyl CoA
Methionine
● Converted to SAM → major methyl group donor in one carbon
Figure 17. Catabolism of Lysine metabolism
● Source of Homocysteine
Tyrosine ● Clinical correlation:
● Following transamination of tyrosine to p- → Elevated homocysteine levels promotes oxidative damage,
hydroxyphenylpyruvate, successive reactions form inflammation and endothelial dysfunction; measure of
maleylacetoacetate, fumarylacetoacetate, fumarate, atherosclerosis
acetoacetate, and ultimately acetyl-CoA and acetate → Folate, Vit B12 and B6 → Decreases level of homocysteine
● Metabolic disorders → In pregnant woman → elevated homocysteine and
→ Type I Tyrosinemia (Tyrosinosis) - defect in decreased Vit. B increased incidence of neural tube defects
fumarylacetoacetate hydrolase
▪ Treatment: diet low in tyrosine and phenylalanine
▪ Untreated tyrosinosis may lead to death from liver failure
→ Type II Tyrosinemia (Richner-Hanhart syndrome) - defect
in tyrosine aminotransferase
→ Alkaptonuria - defect in homogentisate oxidase (catalyzes
conversion of homogentisate to maleylacetoacetate in
tyrosine catabolism)
▪ also called Black Urine Disease urine darkens on
exposure to air due to oxidation of excreted
homogentisate
Phenylalanine
● Phenylalanine is first converted to tyrosine via phenylalanine
hydroxylase
● Hyperphenylalaninemias
→ Type I (classic phenylketonuria, PKU) - arise from defects in
phenylalanine hydroxylase
→ Type II and III - defects in dihydrobiopterin reductase
→ Types IV and V - defects in dihydrobiopterin biosynthesis
● Treatment Figure 19. Methionine to Succinyl-CoA
→ Diet low in protein will prevent mental retardation of PKU
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Amino Acid Metabolism II
Threonine
● This is dehydrates to alpha ketobutyrate which is converted to
propionyl coA
Tryptophan
● Degraded to amphibolic intermediates via the kynurenine-
anthranilate pathway
● Tryptophan-2,3-dioxygenase (tryptophan pyrrolase) opens the
indole ring, incorporates molecular oxygen, and forms N-
formylkynurenine
● Hydrolytic removal of the formyl group of N-formylkynurenine,
Figure 22. Catabolism of Valine, Isoleucine, Leucine
catalyzed by kynurenine formylase, produces kynurenine
● Since kynureninase requires pyridoxal phosphate, excretion of
xanthurenate in response to a tryptophan load is diagnostic of Summary
vitamin B6 deficiency
● Hartnup disease reflects impaired intestinal and renal transport
of tryptophan
● The defect limits tryptophan availability for niacin biosynthesis
pellagra like symptoms
Alanine
Serves as carrier of ammonia and of carbons of pyruvate
from skeletal muscle to liver via the Cahill cycle (glucose-
alanine cycle)
Constitutes the free amino acid of plasma together with
glycine
Cysteine
Participate in the biosynthesis of CoA by reacting with
panthothenate to form 4-phosphopantothenoyl-cysteine
3 enzyme catalyzed reactions convert cysteine to taurine
which can displace the CoA moiety of cholyl-CoA to form bile
acid taurocholic acid
Conversion of cysteine to taurine is initiated by its
OXIDATION to cysteine sulfonate, catalyzed by the non-
heme Fe++ enzyme cysteine dioxygenase.
DECARBOXYLATION of cysteine sulfinate will form
HYPOTAURINE
Oxidation of Hypotaurine dehydrogenase will form
TAURINE
Glutamylcysteine synthetase (with ATP) will form
glutathione
Figure 24. (a) Cahill Cycle (b) Cori and Cahill cycle
Arginine
Serves as carrier of nitrogen atoms in urea biosynthesis
Guanidido group of arginine is incorporated to creatine
After conversion to ornithine, its carbon skeleton becomes
that of putrescine, spermidine, and spermine
Reaction catalyzed by Nitric oxide synthase forms NO
A neurotransmitter, S.msc relaxant and vasodilator Figure 26. Cysteine Conversion 1/2
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Amino Acid Metabolism II
Serine
Biosynthesis of sphingosine and purines and pyrimidines
Provides carbon 2 and 8 of purine and the methyl group of
thymine
Genetic defects in cystathionine Beta synthase, a heme
protein that catalyzes pyridoxi 5- phosphate dependent
condensation of serine and homocysteine homocystinuria
Tryptophan
Participates in the formation of serotonin which will also
leads in the formation of melatonin
Serotonin has multiple physiologic roles: pain perception,
regulation of sleep, appetite temperature, blood pressure
and mood
Other Products
Amino acid esters
Figure 27. Cysteine Conversion 2/2 PHOSPHOSERINE, PHOSPHOTHEREONINE AND
PHOSPOTYROSINE
The phosphorylation and dephosphorylation of specific seryl,
Glycine
threonyl and tyrosyl residues of protein regulate the activity
Metabolites and pharmaceuticals excreted water soluble of enzymes of lipid and CHO met and of proteins that
glycine conjugates included glycocholic acid and hippuric participate in the signal transduction cascades
acid to form Benzoate Sarcosine (N-methylglycine)
Glycine can be incorporate into creatine Its formation from dimethylglycine is catalyzed by
The nitrogen and alpha-carbon of glycine is incorporated into flavoprotein dimethylglycine dehydrogenase which requires a
pyrrole rings and methylene bridges carbons of HEME pteroylpentaglutamate
Entire glycine molecule becomes atom 4, 5, and 7 of purines Can arise by methylation of glycine
Catabolism of sarcosine to glycine catalyzed by
Histidine flavoprotein sarcosine dehydrogenase
Decarboxylation by pyridoxal 5 phosphate dependent
enzyme histidine decarboxylase yields HISTAMINE
Biogenic amines that functions in allergic reaction and gastric
secretion, Concentration follows a circadian rhythm
Other histidine in the body: ergothionine, carnosine and
dietary anserine
Methionine
Major non-protein fate is conversion to S-
adenosylmethionine principal source of methyl groups in
the body
S-adenosylmethionine is synthesized from methionine and
ATP which is catalyzed by methionine adenosyltransferase
(MAT)
3 MAT isozymes
MAT1 and MAT3 of liver and MAT 2 is nonhepatic
HYPERMETHIONINEMIA if decreased MAT 1 and 3
Biosynthesis of spermine and spermidine
These polyamines function in cell proliferation and growth
Tyrosine
Neural cells convert tyrosine to epinephrine and
norepinephrine (must know!!) Figure 29. Sarcosine synthesis
Precursor of Triidothyronine and thyroxine Creatine and Creatinine
Formed from muscle creatine phosphate by irreversible,
nonezymatic dehydration and loss of phosphate
24-hr urinary creatinine = proportionate to muscle mass
Tells if collection is complete or not
Glycine, arginine, and methionine all participate in creatine
biosynthesis
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Amino Acid Metabolism II
Synthesis is completed by methylation of guanidoacetate
by S-adenosylmethionine Treatment/Management
● If detected, treatment should begin ASAP, before one week of
age
B. Non- Amino Acids → Treatment recommended if there is 7 to 10 mg/dL (420 to
Present in tissue in free form include 600 mmol/L) of phenylalanine
β-alanine-Present in combined form in coenzyme A and in β- → Tetrahydrobiopterin (BH4) deficiency should be ruled out as
alanyl dipeptides carnosine, anserine and homocarnosine the cause of hyperphenylalaninemia
β-amino isobutyrate ● Dietary restriction of phenylalanine
ϒ-aminobutyrate (GABA)- Important neurotransmitter → Involves the use of medical foods which are phenylalanine-
β-alanine free protein substitutes
formed during catabolism of pyrimidine URACIL → May also contain glycomacropeptides
Traces results from the hydrolysis of beta alanyl dipeptide by → Take note that optimal intake of protein free substitutes to
enzyme Carnosine meat requirements for optimal growth and development is
still uncertain
β-amino isobutyrate
→ These protein substitutes are not delicious and compliance to
Also formed during the catabolism of pyrimidine THYMINE
diet is an issue
β-amino isobutyrate arise both from the a transamination of → Lifelong dietary restriction results to good outcomes
methylmalonate semialdehyde and L-valine ● Tetrahydrobiopterin (BH4)/sapropterin
→ treatment for mild to moderate PKU
ϒ-aminobutyrate (GABA) → cofactor for PAH
GABA functions in brain tissues as an inhibitory → used in conjunction with dietary restriction
neurotransmitter by altering transmembrane potential → aside from sapropterin, Pegylated phenylalanine ammonia
differences lyase (PEG-PAL), an enzyme that degrades phenylalanine,
Decarboxylation of glutamate by L-glutamate decarboxylase is under investigation as possible treatment for PKU
Defect: 4 hydroxybutyric aciduria
Parkinson’s disease B. Maple Syrup Urine Disease (MSUD)
Clinical Manifestations
● Enzyme defect: Branched chain ketoacid dehydrogenase
● The odor of urine in MSUD is like maple syrup or burnt sugar
● Biochemical defect is the involvement of alpha-keto acids
● Mutation is genes encoding E1 alpha, E1 beta, E2 and E3
● There are five distinct phenotypes of MSUD
→ Classic MSUD
▪ Present in newborns
▪ Most common disorder
▪ Mutation involves genes for E1-alpha, E1-beta, and E2
components of branched chain alpha ketoacid
dehydrogenase complex (BCKDC)
▪ Ketonuria, along with other symptoms such as poor
feeding, irritability, lethargy, and dystonia is observed
within 48 hours of birth
▪ By four days, more serious symptoms such as seizures
Figure 31. GABA synthesis from glutamate and cerebral edema are seen
▪ In some cases the initial symptoms do not appear until 7
IV. CASES days
▪ Breastfeeding delays onset of symptoms by 2 weeks
A.Phenylketonuria ▪ In older infants or children under nutritional management,
Clinical Manifestations metabolic intoxication can still occur in situations where
● Phenylketonuria (PKU) is a genetic disorder that increases catabolism of endogenous protein is induced (stressful
phenylalanine in blood situations (i.e., stressful situations)
● May be due to: ▪ In the latter circumstances, symptoms such as epigastric
→ Defiecient activity of phenylalanine hydroxylase (PAH) pain, vomiting, anorexia, muscle fatigue, pancreatitis,
→ Deficiency of tetrahydrobiopterin as a co-factor hyperactivity, sleep disturbance, stupor decreased
→ Enzyme defect in the recycling of tetrahydrobiopterin cognitive function, dystonia, and ataxia.
● The action of PAH is to break down phenylalanine. ▪ Furthermore, a clinical picture similar to Wernicke
● Increased phenylalanine leads to brain damage encephalopathy is sometimes reported; death occurs by
● Clinical manifestations include: edema and cerebral herniation
→ Intellectual disability → Intermediate MSUD
→ Epilepsy ▪ Rare disorder associated in mutations with E1-alpha
→ Abnormalities in gait, sitting posture, and stance component of BCKDC
→ Hyperactivity ▪ Present during infancy to childhood, especially during
→ Light pigmentation and eczematous rash episodes of stress
→ The body and urine may have a mousy odor due to ▪ Varying level of enzyme activity means that those with
phenylacetic acid greater enzyme activity presents symptoms at a later time
→ However, onset of PKU is insidious and may not cause overt ▪ Clinical signs are characterized by neurological
symptoms until early infancy if undetected by neonatal impairment and developmental delay
screening
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Amino Acid Metabolism II
→ Intermittent MSUD → Axillary and inguinal areas may have a brownish
▪ Second most common type of MSUD discoloration
▪ Present in infancy to childhood, especially during → Perspiration can stain clothing!
episodes of stress → Diagnosis is made if excreted urine appears normal but turns
▪ Patients have normal growth and development to black or brown if left standing or after alkalinization
▪ Symptoms manifest during periods of stress → Hence AKU is also called black urine disease
(ketoacidosis) → Diagnosis is confirmed by quantitative measurement of HGA
in urine, tyrosine levels are normal
▪ Aside from thiamine supplementation, dietary restriction of
branched-chain amino acids is needed to achieve Treatment/Management
metabolic control ● Dietary restriction of tyrosine and phenylalanine will reduce
→ Thiamine-responsive MSUD HGA excretion, but clinical effect is limited
▪ Very rare (one reported case of true thiamine-responsive → Arthropathy is slowed down, but previous damage is
MSUD) irreversible
▪ Involves E2 component of BCKDC ● Ascorbic acid inhibits the enzyme that catalyzes the oxidation of
▪ Present in infancy to childhood, especially during HGA to the polymer with affinity for collagen, but it’s not
episodes of stress demonstrated to be effective against ochronosis
▪ Clinical presentation similar to intermediate MSUD ● Nitisinone inhibits the second enzyme in tyrosine catabolic
→ E3-deficient MSUD pathway, decreasing HGA levels significantly.
▪ Presents rarely in adults, typically present in newborn → Still no clinical benefits
periods
▪ Mutations encoding E3 component of BCKDC Nice to Know!
▪ Lactic acidosis is sometimes a syndrome 5 Amino Acid Disorders Detected by New Born Screening in the
▪ Also have deficiencies in pyruvate and alpha-ketoglutarate Philippines
dehydrogenases - Arginosuccinuria
- Homocystenuria
Treatment/Management - MSUD
● Involves dietary therapy and prompt treatment of acute - PKU
metabolic decompensation - Tyrosenemia
● Dietary therapy; G6PD Deficiency – most common detected disease among
→ The goal is to achieve normal concentrations of branched Filipinos
chain amino acids, especially leucine, in plasma
→ Dietary restriction is maintained throughout life V. CONCLUSION
→ Thiamine supplementation is also done (TPP is a co-factor of
BCKDC) Catabolism of AA begins with the removal of the alpha amino
group which is transferred to alpha-ketoglutarate and
C. Albinism oxaloacetate and excreted ultimately as UREA
Clinical manifestations Resulting carbon skeletons: corresponds to various amino acid
can be derived from or fed into the glycolytic pathway, the TCA ,
● Albinism is homozygous defect in melanin production - either
fatty acid biosynthesis and gluconeogenesis therefore not an
due to lack of or defects in tyrosinase or accessory protein P
isolated pathway
● Clinical manifestations include:
→ Absence of color in the hair, skin, eye Important and dynamic role not only as building blocks for the
→ Cross eye (strabismus), rapid eye movements (nystagmus), synthesis and turnover of proteins but in energy metabolism and
light sensitivity (photophobia, functional blindness as source for gluconeogenesis and reserve energy on
starvation
AA provide precursors for the biosynthesis of a signaling
Treatment/Management molecules, hormones and neurotransmitters
● The goal of treatment is to relieve symptoms associated with
Numerous inherited disorders are with AA metabolism
albinism.
● Interventions include
→ Protecting the skin and eyes from the sun (sunscreen, REVIEW QUESTIONS
covering up with clothing)
→ Glasses are prescribed to correct vision problems and eye from samplex
position 1. Amino acids that are strictly ketogenic
→ Sometimes surgery is done to correct nystagmus a. Lysine and leucine
→ Joining a support group b. Leucine and isoleucine
c. Valine and isoleucine
d. Tyrosine and tryptophan
D. Alkaptonuria (AKU) 2. Severe PKU and shortened lifespan is a result of
Clinical manifestations a. Excess dietary phenylalanine
● Autosomal recessive disorder resulting from deficient activity of b. Excess dietary tyrosine
homogentisic dioxygenase - the third enzyme in tyrosine c. Deficiency of dihydrobiopterin reductase
degradation d. Deficiency of tetrahydrofolate
● Clinical features include: 3. Alkaptonuria, an inborn error of tyrosine metabolism, is
→ Elevated levels of homogentisic acid (HGA) characterixed by darkening of the urine on exposure to air.
→ Ochronosis - pigmentation deposited in the connective tissue This is due to oxidation of excreted:
throughout the body a. Homogentisic acid
→ Asymptomatic in childhood and symptoms may show in the b. Hydroxyphenlypyruvate
third decade of life c. Maleylacetoacetate
→ IV discs are calcified, ochronotic arthritis and complete d. Fumarate
ankyloses
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Amino Acid Metabolism II
4. Maple syrup urine disease is a metabolic disorder of REFERENCES
branched-chain amino acid metabolism. This is due to th
Harper’s Illustrated Biochemistry, 30 ed.
which of the following? Dr. Alba’s Lecture
a. Lack of leucine, isoleucine and valin aminotransferase 2020 Transcriptions
complex Leninger’s and Lippincott’s Biochemistry
b. Defective alpha-keto acid decarboxylase
c. Mutation of dihydrofolate reductase
d. Inability to attach the biotin coenzyme
REFERENCES
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BIOCHEMISTRY 12 of 12