Professional Documents
Culture Documents
net/publication/333716758
CITATIONS READS
0 258
4 authors, including:
Some of the authors of this publication are also working on these related projects:
Development of fungal preparation for accelerated degradation of malathion and parathion in soil View project
All content following this page was uploaded by Debasish Mohapatra on 12 June 2019.
Abstract: Long since the existence of human, fungus has played many important roles in human civilization
knowingly or unknowingly starting from preparing beverages like beer and wine to food items like bread, cakes, etc.
Humans have used them in many different ways directly and indirectly. They domesticated and also commercialized
many fungi for various human needs. One such group of fungus is represented by macro fungus, which is well
known for their beautiful fruiting body, their delicious taste along with unique aroma. They are used worldwide as
food and eaten in cooked and in raw form and also used as medicine due to various bioactive compounds found in
them. But, many species of macro fungus are now in verge of extinction due to the destruction of forest and their
natural habitat. With rapid growth of human population causing urbanization and industrialization many of these
macro fungus species will become extinct soon until some necessary steps are not taken for conservation of these
nature’s important organisms. Moreover, these organisms hold a great opportunity in solving the global food crisis
that arises due to increase in global population. Their unique characteristic of growing in wasteland using organic
waste materials and in places where no other food crops can grow may be exploited for food production for the
growing human population. An attempt has been made to identify various useful macro fungus and different
conservation strategies employed in protecting and utilizing these organisms for future human need.
Keywords: Fungi, Macro fungi, Conservation, Food crisis
growth of plants but also for the insects and nematodes macro fungus is removed from its natural environment
[5]. [10]. The most important character to be observed for
identification are the disc and the margins followed by
With the need of protecting and utilizing the macro
its configuration, color and then its texture and
fungus, mycologists are strongly pitching for
thickness. The most common types of pileus seen on
identification and conservation strategies to protect
macro fungus are campanulate type (bell-shaped),
these important organisms. Till date no specific
conical type, convex type, depressed type, flat,
conservation strategies has been developed to protect
infundibuliform type, offset type, ovate type, umbilicate
macro fungus but many suggestions have already been
type and umbonate type.
discussed in International Society for Fungal
Conservation. An attempt has been made to give The spore-bearing surface under the pileus is of four
attention to macro fungi similar to those of animals or types:
plants by studying various identification and
Gills – These are wide and thin sheet-like plated
conservation strategies applied to them. The
radiating from stem.
sustainability of macro fungi is thus important to
maintain and promote productivity of croplands, Pores – These are many small tubes ending in a sponge
rangelands and forests, and also very much critical for like surface.
the maintenance of biodiversity on earth [6].
Ridges – These are short, blunt elevated line on the
2. Identification of macro fungus stem and under the cap.
Identifying macro fungi compared to other fungus is Teeth – These are many small fingers like projections
much easier in wild due to their very unique characters under the surface of the cap.
of forming beautiful and eye catching fruiting body [7].
Lamellae
To identify macro fungus on the basis of fruiting body is
difficult as many macro fungus share similar A lamella, or gill, is a papery hymenophore rib under
morphology and colour but in reality they are totally the cap of some macro fungus species, most often found
different. Moreover, their nature to grow in all type of in the group Agaricus. The gills are used by the
organic matter makes them very widely spread in any mushrooms as a means of spore dispersal, and are
ecosystem that increases difficulty in identification [8]. important for species identification. The attachment of
the gills to the stem is classified based on the shape of
Mainly two methods of identification are used by the
the gills when viewed from the side. Apart from the
mycologists for the identification of macro fungus:
attachment of gills, the color, crowding and the shape of
2.1 Traditional Method individual gills can also be considered important in
2.2 Molecular Method identification. Additionally, gills can have distinctive
microscopic or macroscopic features. For instance,
2.1. Traditional Method for identifying macro
Lactarius species typically seep latex from their gills.It
fungus
was originally believed that all gilled fungi belong to
The traditional method of identification includes study the group of Agaricales, but more recent analysis
and observation of morphological appearance of the indicates that this is not true. It is evident from the
fungus along with its environmental area, which include phylogenetic studies that the development of gills
the following parameters [9]: represents convergent evolution (i.e. gill-like structures
evolved separately) rather than being an anatomic
2.1.1 Macroscopic Description
feature that evolved only once. The most appealing
2.1.2 Microscopic Description
reason why various species of basidiomycetes evolved
2.1.3 Habit and Habitat
gills is that it is the most effective means of increasing
2.1.1. Macroscopic Description the ratio of surface area to mass, which increases the
potential for spore production and dispersal. This
Pileus
important characteristic feature has been used by
The pileus is the technical name for the cap, or cap-like mycologist for identifying macro fungus. Based on the
part, of a basidiocarp or ascocarp (fungal fruiting body) attachment of gills to the stipe or stem, it can be
that supports a spore-bearing surface, the hymenium. Its classified to various types like adnate, adnexed,
size, shape, color, texture, moisture, taste, odor and decurrent, emarginate, free, seceding, sinuate and
consistency play a very important role in the subdecurrent [11].
identification of the macro fungus and this character
Stipe
should be studied fresh as soon as possible because
many of the characteristics gets destroyed as soon as the
In mycology a stipe refers to the stem or stalk-like example Gyroporuscyanescens when exposed to air, the
feature supporting the cap of a macro fungus. Like all variegatic acid present in this macro fungus is converted
tissues of the macro fungus other than the hymenium, to the blue-colored molecule quinonemethide.
the stipe is composed of sterile hyphal tissue. In many
Bleeding effect in macro fungus
instances, however, the fertile hymenium extends down
the stipe some distance. Fungi that have stipes are Certain macro fungus exudes a milky liquid substance
referred as stipitate. The evolutionary benefit of a stipe when they are cut. This is not real "blood" but natural
is generally considered to be in mediating spore latex that is produced when a part of the macro fungus
dispersal. A macro fungus with stipe can release its is injured. The exact reason for the latex is not fully
spores to distance by the help of wind currents or by understood. It is believed to be a method of defense, due
spreading them on to the passing animals. No all macro to its bitter taste and the fact that it dries to form a
fungus have stipe and they are represented by groups of protective coating around the injury. It also keeps out
cup fungi, puffballs, earthstars, some polypores, jelly bacteria and other contaminants.
fungi, ergots, and smuts. The presence of stipe on macro
Macro fungus like those in the Lactarius genus secretes
fungus can be widely used for proper identification.
out latex like products. These are called the milky caps
Mycologist follows the texture of the stipe (fibrous,
due to the milky latex they exude upon injury. Another
brittle, chalky, leathery, firm, etc.), presence or absence
example is the blue bruising and bleeding Lactarius
of cuticle (aculopellis) that can be important character
indigo, the indigo milk cap. When cut, this mushroom
for identification. Other important aspect that are
bleeds bright blue latex that slowly turns green. That’s
observed are the presence of a partial veil (such as an
why if any bleeding is observing during mushroom
annulus or cortina) or universal veil (volva), whether the
identification, be sure to note both the initial liquid
stipes of macro fungus fuse at their base, or extends
colour and the final dried colour. These will sometimes
underground in root like structure (rhizome), its general
be different and it is method used to identify macro
size and shape. It is therefore precaution must be taken
fungus.
when collecting the macro fungus for identification as
all these characters should not be harmed and remain Spore Print
intact while digging the mushroom out of the soil, rather
While a single macro fungus spore can't be seen by the
than cutting it off at mid-stipe region.
naked eye, a pile of many spores can be seen and
Colour bruising reactions and Bleeding identifies with naked eye for their colour, and thus is a
crucial identification feature. Obtaining a macro fungus
Another feature for identifying macro fungus is to check
"spore print" is therefore an essential step in the
whether they bruise or bleed a specific color when they
identification process. Before going through the process
are harmed. Certain macro fungus changes their color
of making a spore print, it is worth noting that macro
when damaged or injured. Cutting into a mushroom and
fungus frequently make their own spore prints, in
observing any color changes can be very important
nature. If carefully noticed coloured dust covering a leaf
when trying to determine what it is. For identification
or the ground beneath a macro fungus gills or pores,
point of view mycologists consider color bruising as one
then we have probably witnessed this phenomenon.
of the least reliable method for mushroom identification.
Tightly clustered macro fungus, in fact, frequently
There exists variations and color changes may not be
leaves spore prints on one other, since caps overlap.
trustworthy depending on the age of the fungus. But,
still it may be used as another tool in the identification Normally spore print is taken on relatively mature
arsenal for macro fungus. macro fungus. Young macro fungus, and macro fungus
with some kind of a covering over their gills or pores (a
Colour Bruising in macro fungus
partial veil) are not likely to drop spores in order to
While identifying macro fungus, one can check for make a print. Normally spore print involves removing
bruising effect by nicking the top and bottom of the cap of the stem and placing the cap, gills or pores
and watching for any color change. It should be done downward, on a piece of paper or glass. For larger
within 30 minutes of picking, as specimens that are not macro fungus, a section of the cap is cut and covers
fresh won't give a reliable result. It is mainly seen on the them with newspaper or paper and sprinkle water over it
underside of the pileus and the color may changes from so that the moisture will make spore to release on the
yellow to blue. The discoloration is due to bruising surface and a spore print can be thus taken.While some
effect and it can be caused by a chemical reaction that spore prints can appear within a few hours, it is often
occurs when certain compounds in the cell walls of the best to wait overnight, just to be sure. When the
mushroom are exposed to air. When the cap is nicked covering is removed and lift the mushroom cap is lifted,
and the cell walls are broken, oxygen in the air mingles we can find a "print". The colour of the spore print is
with these compounds and changes their color. For what should be compared with descriptions from field
guides and keys. Interpreting colour of the spore print Some of the most commonly encountered spore surfaces
can be difficult many times and it is a matter of are austroboletusgracilis (pitted spores),
generalization to conclude on it. But while minor strophariarugasoannulate (smooth, dextrinoid spore),
differences (like, between "white" and "creamy") may scleroderma septentrionale (reticulate spore),
be difficult to segregate, distinguishing a white spore cystodermagranulosum (smooth, inamyloid spores),
print from a brown one or a pink one is easy enough, lacrymariavelutina (warty spore), lactariussubvernalis
and it will helps enormously in identifying a mushroom. (partially reticulate spore), russulafragrantissima
(amloid, spiny spores) and scleroderma areolatum
2.1.2. Microscopic Description
(spiny spores). Spores with subtle ornamentation, like
Spores the Lacrymariavelutina spores, do not require
measurements beyond an assessment of basic
Observation of spores, and measuring them, is one of
dimensions. But prominent ornamentation, as in the
the easiest methods that can be done through a
Scleroderma spores, should be measured separately.
microscope. It is very much useful method in the
The distance that spines stick out from the spore's
identification process to know whether a macro fungus
surface should be measured on several to many spores,
spores are smooth, ornamented, ridged, or pitted and to
to get a sense of the range of possibilities.
know their dimensions. The spore should be mature
enough meaning that it must be fallen off the macro Spore producing organs (Basidia)
fungus. With the help of scalpel or blade, the spore dust
A basidium (pl., basidia) is a microscopic, spore-
is collected and a spore print is taken. Normally, a drop
producing structure found on the hymenophore of
of Melzer's reagent is added on the dust, and with the
fruiting bodies of basidiomycete fungi. The presence of
change in colour to bluish black, reddish brown or no
basidia is one of the main characteristic features of the
change in colour can be represented as amyloid,
Basidiomycota. A basidium usually bears four sexual
dextrinoid, or in amyloid respectively.
spores called basidiospores, sometimes the number may
Spore Shapes be two or even eight. In a typical basidium, each
basidiospore is borne at the tip of a narrow prong or
Many times knowing the shape of a macro fungus
horn called a sterigma (pl. sterigmata), and is forcibly
spores can eliminate hours of sorting through
discharged upon maturity. The word basidium literally
identification keys. The spores belong to
means little pedestal or stand, on which the basidium
Agrocybeerebia have a snout-nosed end, which helps to
supports the spores. However, some biologists suggest
separate them many other Agrocybe spores. The spores
that the structure more closely resembles a club. An
of Inocybe and Entoloma are notorious for their funky
immature basidium is known as a basidiole. Basidia are
shapes, and a quick peek at these spores can often
occasionally distinctive in shape, but they are usually
separate the mushrooms from thousands of other Little
shaped more or less like inverted clubs [12].
Brown Mushrooms. The different types of shapes of
spores is globoes (rounded), subgloboes (nearly Another organ called cystidia, are special sterile cells
rounded), lacrymoid (tear-shaped), elliptical, ellipsoid, that are found, in some macro fungus, popping up
fusiform (football shaped) and funky. between the basidia. Unlike the basidia, cystidia do not
produce spores. Their shapes and sizes vary widely
Size of Spores
between macro fungus species. Some macro fungus has
The spores are measured using a ruler in the eyepiece, boring, club-shaped cystidia that are hardly different
and the values are converted to microns using the from the basidia, except for the absence of spore-
conversion multiplier established during calibration of holding prongs. Others have elaborately ornamented
microscope. Normally it is best to measure the width or cystidia, thick-walled and enormous cystidia, long and
length of the spore without the ornamentation (random pointy cystidia. In fact mycologists have given names to
shaped spore), and measure the ornamentation many types of cystidia and, to be accurate, cystidia can
separately. The size of the spores is normally taken in occur elsewhere on a mushroom not just on the spore
microns and help mycologists to identify different producing surface. One could spend days learning about
spores. the various cystidia found on macro fungus, reading
page after page of meticulous descriptions cataloguing
Spore Surfaces
every conceivable shape and size but no one knows
Many macro fungus spores have smooth surfaces but what they are Regardless of what cystidia actually do,
other spores feature spines, warts, ridges, lines, and they are often very important in advanced mushroom
other distinctive surface structures. Some spores that identification, and there is no avoiding their its analysis
look smooth actually have amazingly ornamented is the only way to penetrate Mycena, Pholiota, Inocybe,
surfaces if you look at them with a Scanning Electron. Stropharia, or many other genera. With respect to
position cystidia are of following type: Pleurocystidia number of sequences available for analysis. More
(cystidia on the faces of the gills.)andCheilocystidia studies are required to carry out in the field of
(cystidia on the edges of the gills). identification of macro fungus using high throughput
molecular biology tools and techniques.
2.1.3. Habit and Habitat
3. Conservation of macro fungus
The other most important character that should be taken
into account for the identification is the nature of the The conservation of Fungus has long been neglected
substrate degraded by the fungus which includes the compared to the conservation of other life forms of
characters like general shape, attachment to substrate, nature like animals and plants [19]. Recently, a special
higher or lower plant associates, substrate characters meeting was held on 6 August, 2010 at the Royal
(acid, peaty woody, etc.), locality and environmental Botanic Garden, Edinburgh, where mycologists from
parameter measurements like the temperature, humidity, over forty countries established the International Society
rainfall and altitude typifying of the mycological for Fungal Conservation. For the first time, a meeting of
environment should also be considered. such extent were carried out exclusively and explicitly
devoted to protecting and conserving fungi. Macro
2.2. Molecular method
fungus also needs protection and conservation, as they
Development of molecular methods in recent years has are also vulnerable to habitat loss and climate change
moved fungal taxonomy and ecology into a new modern that affects majority of animals and plants [20]. Rio
phase of research. Molecular methods are relatively Convention on Biological Diversity [CBD], claims to
quick and easy to carry out and generate highly protect all forms of life, including animals, plants and
reproducible results that are crucial for identification micro-organisms but failed to mention fungi that belong
[13]. DNA can be isolated from pure cultures as well as neither to the animal nor plant kingdom As they
various parts of a fungus such as fruit bodies, spores or themselves include the largest single living individual
the sheath. Molecular techniques such as Terminal known on earth, far bigger than the blue whale or any of
RFLP (TRFLP) can be used to profile the community of the great redwoods, they can hardly be described as
organisms in bulk samples of soil or wood. Such micro-organisms. So, fungi simply do not fit in any of
molecular methods remove the need of isolating the CBD categories hence many countries biodiversity
individual macro fungus or the substrates that are action plans fail to consider fungi at all. The start of the
difficult to sampling [14, 15]. Molecular tools not only modern fungal conservation movement is quite recent
offer the promise of rapid identification of fungi but and a chronicle of its development is as follows:
also provide novel techniques for sampling fungal
The European Council for Conservation of Fungi (now
communities. High-throughput techniques such as
the fungal conservation group of the European
pyrosequencing can generate many thousands of macro
Mycological Association) was established in Oslo in
fungus samples and study at the same time [16]. The
1985, and with this event marked the start of the modern
identification of fungi using DNA sequence data relies
fungal conservation movement. Thereafter, specialist
basically on two things-
groups for "lichens" and "fungi" were set up in the
(i) a region that is species-specific – the so-called Species Survival Commission of the International Union
barcode region, and for Nature Conservation (IUCN), the Australasian
(ii) a databank of sequences from the barcode region Mycological Society formed a continental-level fungal
for known and appropriately or specifically conservation group, and the ground-breaking volume
named fungi. Fungal Conservation: issues and solutions [21] drew
worldwide attention to the topic.
The internal transcribed spacer (ITS) region of the
ribosomal DNA is a very promising barcode region for November 2005. A pioneering workshop was organized
fungi although it does not appear to discriminate for all by the European Council for Conservation of Fungi in
species [17]. The main problem in identifying sequences Córdoba, Spain. This was one of the earliest uses
is that there are relatively few sequences for named (perhaps the first) for fungi of the IUCN conservation
species against which to compare those from status evaluation system.
environmental samples. Sequences, whether from fruit-
September 2007. Three prototype specialist committees
bodies or environmental samples, can be identified
were established for conservation of fungi inadequately
against those in the International Nucleotide Sequence
covered by the IUCN's specialist groups of that time,
Databases (INSD) by either matching on overall
they are
similarity (such as a BLAST search) or by including the
unknown sequences within a phylogenetic analysis 1. Mildews, Moulds&Myxomycetes
including other related sequences [18]. Reliability of 2. Non-lichen-forming Ascomycetes
identification will improve as each study adds to the 3. Rusts & Smuts
[9] D.D. Tibuhwa, A.K. Kivaisi and F.F.S. Magingo, the International Sequence Databases and its
“Utility of the macro-micromorphological implications for molecular species identification”.
characteristics used in classifying the species of Evolutionary Bioinformatics, 4, 193-201., 2008.
Termitomyces”. Tanzania Journal of Science, 36, [18] M.B. Quin, C.M. Flynn, G.T. Wawrzyn, S.
3–46., 2010. Choudhary and C. Schmidt-Dannert, “Mushroom
[10] D. Arora, Mushrooms demystified: A hunting by using bioinformatics: application of a
comprehensive guide to the fleshy fungi. Berkeley: predictive framework facilitates the selective
Ten Speed Press, 959, 1986. identification ossesquiterpenesynthase in
[11] A.H. Smith, H.V. Smith and N.S. Weber, How to basidiomycota”. Chembiochem, 14, 2480-2491.,
Know the Gilled Mushrooms. U.S.A., 1979. 2013.
[12] H.A.B. Wösten and J.G.H. Wessels,”The [19] G. Venturella, “Mycological investigations and
emergence of fruiting bodies in Basidiomycetes”. conservation of fungi in Sicily (South Italy)”,
In: U. Kues and R. Fischer (eds), The Mycota I Mycologia Balcanica, 1, 21–23., 2004.
growth, differentiation and sexuality. Springer, [20] C. Manoharachary, K. Sridhar, R. Singh, A.
Berlin, 393–414., 2006. Adholeya, T. S. Suryanarayanan, S. Rawat and B.
[13] T.R.Horton and T. D. Bruns, “The molecular N. Johri, “Fungal biodiversity: Distribution,
revolution in ectomycorrhizalecology:peeking into conservation and prospecting of fungi from India,
the black-box”. Molecular Ecology, 10, 1855-187., Special section: Microbial Diversity”, Current
2001. Science, 89.1., 2005.
[14] I.C. Anderson and J.W.G Cairney, [21] D. Moore, M. Nuata, S. Evans and M. Rotheroe,
“Ectomycorrhizal fungi: exploring the mycelia “Fungal Conservation- Issues and Solutions”
frontier”. FEMS Microbiology Reviews, 31, 388- Cambridge University Press, Cambridge, 2001.
406., 2007. [22] G.M. Mueller and J.P. Schmit, “Fungal
[15] K. Martin, “Introduction to molecular analysis of biodiversity: What do we know? What can we
ectomycorrhizal communities”. Journal of the Soil predict?”, Biodiversity and Conservation, 16.1., 1-
Science Society of America, 71, 601-610., 2007. 5., 2007.
[16] D.S. Hibbett, A. Ohman and P.M. Kirk “Fungal [23] C.A. Grgurinovic and Simpson, “Conservation
ecology catches fire”. New Phytologist, 184, 279- Status of the known Agaricales, Bolelales,
82., 2009. Canlharellales, Lycoperdales, Phallales and
[17] R.H. Nilsson, E. Kristiansson, M. Ryberg, N. Russulales of South Australia”. Fungal Diversity, 8,
Hallenberg and K.H. Larsson, “Intraspecific ITS 97-127., 2001.
variability in the Kingdom Fungi as expressed in