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Lecture 3
Characterisation of Nanomaterials
Molecular Spectroscopy
(Infrared, UV-Vis, Fluorescence)
Dr. Lorico DS Lapitan Jr.
g-rays X-rays UV IR Microwave Radio
Visible
Graphics source: Wade, Jr., L.G. Organic Chemistry, 5th ed. Pearson Education Inc., 2003
Infrared radiation is largely thermal energy.
It induces stronger molecular vibrations in covalent bonds, which can
be viewed as springs holding together two masses, or atoms.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 5th ed. Pearson Education Inc., 2003
VIBRATIONAL MODES
• Covalent bonds can vibrate in several modes, including stretching,
rocking, and scissoring.
• The most useful bands in an infrared spectrum correspond to
stretching frequencies, and those will be the ones we’ll focus on.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 5th ed. Pearson Education Inc., 2003
TRANSMISSION vs. ABSORPTION
When a chemical sample is exposed to the action of IR LIGHT, it can
absorb some frequencies and transmit the rest. Some of the light can
also be reflected back to the source.
Transmitted light
IR Chemical
Detector
source sample
The detector detects the transmitted frequencies, and by doing so also reveals the
values of the absorbed frequencies.
AN IR SPECTRUM IN ABSORPTION MODE
The IR spectrum is basically a plot of transmitted (or absorbed) frequencies
vs. intensity of the transmission (or absorption). Frequencies appear in the
x-axis in units of inverse centimeters (wavenumbers), and intensities are
plotted on the y-axis in percentage units.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 5th ed. Pearson Education Inc., 2003
THE FINGERPRINT REGION
Although the entire IR spectrum can be used as a fingerprint for the purposes of
comparing molecules, the 600 - 1400 cm-1 range is called the fingerprint region.
This is normally a complex area showing many bands, frequently overlapping each
other. This complexity limits its use to that of a fingerprint, and should be ignored by
beginners when analyzing the spectrum. As a student, you should focus your
analysis on the rest of the spectrum, that is the region to the left of 1400 cm-1.
Focus your analysis on this region. This is where most stretching Fingerprint region: complex and difficult to
frequencies appear. interpret reliably.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF ALKANES
Alkanes have no functional groups. Their IR spectrum displays only C-C and C-H
bond vibrations. Of these the most useful are the C-H bands, which appear
around 3000 cm-1. Since most organic molecules have such bonds, most organic
molecules will display those bands in their spectrum.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 5th ed. Pearson Education Inc., 2003
IR SPECTRUM OF ALKENES
Besides the presence of C-H bonds, alkenes also show sharp, medium bands
corresponding to the C=C bond stretching vibration at about 1600-1700 cm-1.
Some alkenes might also show a band for the =C-H bond stretch, appearing
around 3080 cm-1 as shown below. However, this band could be obscured by the
broader bands appearing around 3000 cm-1 (see next slide)
Graphics source: Wade, Jr., L.G. Organic Chemistry, 5th ed. Pearson Education Inc., 2003
IR SPECTRUM OF ALKENES
This spectrum shows that the band appearing around 3080 cm-1 can be obscured
by the broader bands appearing around 3000 cm-1.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF ALKYNES
The most prominent band in alkynes corresponds to the carbon-carbon
triple bond. It shows as a sharp, weak band at about 2100 cm-1. The
reason it’s weak is because the triple bond is not very polar. In some
cases, such as in highly symmetrical alkynes, it may not show at all due to
the low polarity of the triple bond associated with those alkynes.
Terminal alkynes, that is to say those where the triple bond is at the end of
a carbon chain, have C-H bonds involving the sp carbon (the carbon that
forms part of the triple bond). Therefore they may also show a sharp, weak
band at about 3300 cm-1 corresponding to the C-H stretch.
Internal alkynes, that is those where the triple bond is in the middle of a
carbon chain, do not have C-H bonds to the sp carbon and therefore lack
the aforementioned band.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF A NITRILE
In a manner very similar to alkynes, nitriles show a prominent band around 2250
cm-1 caused by the CN triple bond. This band has a sharp, pointed shape just
like the alkyne C-C triple bond, but because the CN triple bond is more polar, this
band is stronger than in alkynes.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF AN ALCOHOL
The most prominent band in alcohols is due to the O-H bond, and it appears as a
strong, broad band covering the range of about 3000 - 3700 cm-1. The sheer size
and broad shape of the band dominate the IR spectrum and make it hard to miss.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF ALDEHYDES AND KETONES
• Carbonyl compounds are those that contain the C=O functional
group. In aldehydes, this group is at the end of a carbon chain,
whereas in ketones it’s in the middle of the chain. As a result, the
carbon in the C=O bond of aldehydes is also bonded to another carbon
and a hydrogen, whereas the same carbon in a ketone is bonded to
two other carbons.
• Because aldehydes also contain a C-H bond to the sp2 carbon of the
C=O bond, they also show a pair of medium strength bands positioned
about 2700 and 2800 cm-1. These bands are missing in the spectrum
of a ketone because the sp2 carbon of the ketone lacks the C-H bond.
IR SPECTRUM OF ALDEHYDES AND KETONES
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF A CARBOXYLIC ACID
A carboxylic acid functional group combines the features of alcohols and ketones
because it has both the O-H bond and the C=O bond. Therefore carboxylic acids
show a very strong and broad band covering a wide range between 2800 and
3500 cm-1 for the O-H stretch. At the same time they also show the stake-shaped
band in the middle of the spectrum around 1710 cm-1 corresponding to the C=O
stretch.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRA OF AMINES
The most characteristic band in amines is due to the N-H bond stretch, and it appears as a
weak to medium, somewhat broad band (but not as broad as the O-H band of alcohols). This
band is positioned at the left end of the spectrum, in the range of about 3200 - 3600 cm-1.
Primary amines have two N-H bonds, therefore they typically show two spikes that make this
band resemble a molar tooth. Secondary amines have only one N-H bond, which makes
them show only one spike, resembling a canine tooth. Finally, tertiary amines have no N-H
bonds, and therefore this band is absent from the IR spectrum altogether. The spectrum
below shows a secondary amine.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
IR SPECTRUM OF AMIDES
The amide functional group combines the features of amines and ketones because
it has both the N-H bond and the C=O bond. Therefore amides show a very
strong, somewhat broad band at the left end of the spectrum, in the range between
3100 and 3500 cm-1 for the N-H stretch. At the same time they also show the
stake-shaped band in the middle of the spectrum around 1710 cm-1 for the C=O
stretch. As with amines, primary amides show two spikes, whereas secondary
amides show only one spike.
Graphics source: Wade, Jr., L.G. Organic Chemistry, 6th ed. Pearson Prentice Hall Inc., 2006
ULTRAVIOLET AND VISIBLE
SPECTROSCOPY
Theory and Application of UV-Vis
to Characterisation of Au and Ag
Plasmonic Nanomaterials
Visible Spectroscopy
WHAT IS COLOUR?
Colour is a sensation which occurs when light enters the eye and
focuses on the retina at the back of the eye. The light actually initiates a
photochemical reaction in the nerve cells attached to the retina. These
transmit impulses to the brain and stimulate our sense of colour.
All the colours we actually sense are made up of these three colours
together with white and grey and black.
Visible Spectroscopy
COMPOSITION OF WHITE LIGHT
• Sunlight is white light and covers a wavelength range of 380-750nm. A simple
physics experiment shows that white light is actually a composition of a range of
colours i.e., light of different energies and hence wavelengths.
LOW HIGH
UV-Visible Spectroscopy
UV Radiation – Wavelength range 220 - 380nm
log(I0/I) = A
I0 I
sample
UV-VIS sources
200 700
detector
l, nm
monochromator/
reference
• The amount of light transmitted with respect to the incident light is called
TRANSMITTANCE (T) ie.,
T=
It
Io
• Sample can absorb all or none of the incident light and therefore
• transmittance often quoted as a percentage eg.,
It
% T= X 100
Io
UV-Visible Spectroscopy – Theory
ABSORBANCE A = - log10 T
It B
A = - log10
I A
o
Io 0
A = log10 220 380
Wavelength(nm)
It
With the advantage that absorbance measurements are usually linear with
Concentration, absorbance spectra are now used
The Laws of Spectrophotometry
There are two very important basic laws and a third one which is a
combination of the two.
A cl
A = Ecl Hence E =A
cl
E = 1 ˛
mole litre-1 x cm
E = mole-1 litre x cm -1
But 1 litre = 1000 cm3
E = 1000 mole-1 cm3 x cm -1
Hence Units of E = 1000 cm2 mole -1
UV-Visible Spectroscopy – Theory
IMPORTANCE OF THE BEER LAMBERT LAW
A = Ecl but if E and l are constant
ABSORBANCE AT 300nm
From measuring absorbance of sample x
x
Concentration of analyte in sample
can be obtained from the calibration curve x
x
E can be obtained from the slope of the
calibration curve for a given wavelength (l) x
CONCENTRATION (moles litre-1 )
UV-Visible Spectroscopy – Theory
RULES FOR QUANTITATIVE ANALYSES
x
ABSORBANCE AT 300nm
At high concentrations the calibration curve may x
deviate from linearity – Always ensure your
concentration of the sample falls within the linear x
range – if necessary dilute sample
x
Absorbance not to exceed 1 to reduce error* x
CONCENTRATION (moles litre-1 )
Paramelle, D., Sadovoy, A., Gorelik, S., Free, P., Hobley, J., & Fernig, D. G. (2014). A rapid method to estimate the concentration
of citrate capped silver nanoparticles from UV-visible light spectra. Analyst, 139(19), 4855-4861.
Silver Nanoparticles Optical Properties:
The Effect of Local Refractive Index on Optical
Properties
As the refractive index near the nanoparticle surface
increases, the nanoparticle extinction spectrum shifts to
longer wavelengths (known as red-shifting).
Smaller Au
nanospheres primarily
absorb light and have
peaks near 520 nm,
while larger spheres
exhibit increased
scattering and have
peaks that broaden
significantly and shift
towards longer
wavelengths (known
as red-shifting).
Gold Nanoparticles Optical Properties:
The Effect of Local Refractive Index on Optical
Properties
As the refractive index near the nanoparticle surface increases,
the nanoparticle extinction spectrum shifts to longer wavelengths
(known as red-shifting).
The figure displays the
calculated extinction
spectrum of a 50 nm gold
nanosphere as the local
refractive index is increased.
Increasing the refractive index
from 1.00 to 1.60 results in an
extinction peak shift of over
40 nm, moving the peak from
the green to the red region of
the spectrum.
Gold Nanoparticles Optical Properties:
The Effect of Aggregation on Optical Properties
As the particles destabilize, the original extinction peak will
decrease in intensity (due to the depletion of stable nanoparticles),
and often the peak will broaden or a secondary peak will form at
longer wavelengths (due to the formation of aggregates).
In the figure, the extinction spectrum of
12 nm functionalized gold that has
carboxy (-COOH) groups on the surface
is monitored as the solution pH is
changed from 6.5 to 3. As the solution
becomes more acidic, the carboxy group
is protonated and the zeta potential is
reduced resulting in destabilized
nanoparticles that aggregate. The rapid
change in the extinction spectrum as the
pH is decreased clearly demonstrates
that the nanoparticles are
agglomerating.
Gold nanoparticles for applications in cancer
radiotherapy: Mechanisms and recent advancements
Her, S., Jaffray, D. A., & Allen, C. (2017). Gold nanoparticles for applications in cancer radiotherapy: Mechanisms and recent
advancements. Advanced drug delivery reviews, 109, 84-101.
Gold nanoparticles in radiation research:
potential applications for imaging and
radiosensitization
Dorsey, J. F., Sun, L., Joh, D. Y., Witztum, A., Kao, G. D., Alonso-Basanta, M., ... & Tsourkas, A. (2013). Gold
nanoparticles in radiation research: potential applications for imaging and radiosensitization. Translational cancer
research, 2(4), 280.
Tumors Grow Blood Vessels
Tumors need blood to grow larger than ~2mm in size
5) Detector
• The detector can either be single-channeled or multichannel.
• The single-channeled detector can only detect the intensity
of one wavelength at a time, while the multichannel detects
the intensity at all wavelengths simultaneously, making the
emission monochromator or filter unnecessary.
Fluorescence Spectroscopy: Instrumentation
6) Output
The output is the form of a plot of intensity of emitted light
as a function.
Quantum Yields (ΦF)
• The fluorescence quantum yield can be calculated by
the ratio of photons absorbed to photons emitted by
the system.
Absorbance
A plot of integrated fluorescence intensity versus absorbance at the excitation
wavelength. The slope of the graphs are proportional to the quantum yield of the
different samples. Quantum yield is then calculated using an equation, where
subscripts ST denotes standard sample and X denotes the test sample; QY is the
quantum yield; RI is the refractive index of the solvent.
Quantum Yields (ΦF)
The assumption used in the comparative method is valid only in the Beer-Lambert law linear
regime. Beer-Lambert law states that absorbance is directly proportional to the path length
of light travelled within the sample, and concentration of the sample. The factors that affect
the quantum yield measurements are the following:
• Concentration – Low concentrations should be used (absorbance <
0.2 a.u.) to avoid effects such as self quenching.
• Solvent – It is important to take into account the solvents used for the
test and standard solutions. If the solvents used for both are the same
then the comparison is trivial. However, if the solvents in the test and
standard solutions are different, this difference needs to be accounted
for. This is done by incorporating the solvent refractive indices in the
ratio calculation.
• Standard samples – The standard samples should be characterized
thoroughly. In addition, the standard sample used should absorb at
the excitation wavelength of the test sample.
• Sample preparation – It is important that the cuvettes used are
clean, scratch free and clear on all four sides. The solvents used
must be of spectroscopic grade and should not absorb in the
wavelength range.
• Slit width – The slit widths for all measurements must be kept
constant.
Qualitative Information
• Useful qualitative information such as size distribution,
shape of the particle and presence of surface defects can
be obtained.
Emission spectra of CdSe QDs showing the full width half maximum (FWHM).
Quantum Dots
• Quantum dots are usually regarded as
semiconductors by definition.
• Similar behavior is observed in some metals.
Therefore, in some cases it may be acceptable to
speak about metal quantum dots.
• Typically, quantum dots are composed of groups
II-VI, III-V, and IV-VI materials.
• QDs are bandgap tunable by size which means
their optical and electrical properties can be
engineered to meet specific applications.
Quantum Dots (QD)
• Nanocrystals (2-10 nm) of
semiconductor compounds
• Small size leads to
confinement of excitons
(electron-hole pairs)
Eg
• Quantized energy levels
• When these electrons drop back into the outer orbit around the atom
(the valence band), they emit light.
• The colour of that light depends on the energy difference between the
conductance band and the valence band.
Quantum Dots
Eg
QD Synthesis: Colloidal Methods
• Example: CdSe quantum
dots
• 30mg of Elemental Se and 5mL of
octadecene are used to create a stock
precursor Se solution.
• 0.4mL of Trioctylphosphine oxide (TOPO) is
added to the Se precursor solution to
disassociate and cap the Se.
• Separately, 13mg of CdO, 0.6mL of oleic
acid and 10mL of octadecene were
combined and heated to 225oC
• Once the CdO solution reaches 225oC,
room-temperature Se precursor solution
was added. Varying the amount of Se
solution added to the CdO solution will
result in different sized QDs.